Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32630 * 2 1 4 4 C 1.54918 * 110.36876 * 122.34993 * 2 1 3 5 5 C 1.55148 * 101.58167 * 155.84990 * 4 2 1 6 6 H 1.09001 * 110.87682 * 82.93519 * 5 4 2 7 7 N 1.46499 * 110.72013 * 206.13667 * 5 4 2 8 8 C 1.36933 * 120.00420 * 199.97939 * 7 5 4 9 9 H 1.07998 * 119.99892 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00415 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99988 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00304 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46979 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47532 * 119.99942 * 12 10 8 15 15 H 1.48502 * 109.47028 * 240.00292 * 12 10 8 16 16 C 1.54327 * 102.94463 * 324.49998 * 5 4 2 17 17 N 1.47022 * 107.27058 * 22.19156 * 16 5 4 18 18 C 1.34776 * 125.64897 * 181.04116 * 17 16 5 19 19 O 1.21283 * 120.00013 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99579 * 0.02562 * 18 17 16 21 21 N 1.46507 * 109.46847 * 180.02562 * 20 18 17 22 22 C 1.36160 * 119.85221 * 89.99895 * 21 20 18 23 23 C 1.35550 * 119.25404 * 179.97438 * 22 21 20 24 24 C 1.40738 * 118.99916 * 0.02562 * 23 22 21 25 25 O 1.35157 * 120.16292 * 179.97438 * 24 23 22 26 26 N 1.32423 * 119.67009 * 359.97438 * 24 23 22 27 27 C 1.33272 * 120.73097 * 359.74116 * 26 24 23 28 28 O 1.21978 * 119.47563 * 180.27781 * 27 26 24 29 29 H 1.09002 * 109.47153 * 180.78493 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.78684 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.78665 * 1 2 3 32 32 H 1.08997 * 110.99971 * 273.92470 * 4 2 1 33 33 H 1.08998 * 111.00095 * 37.77321 * 4 2 1 34 34 H 0.97000 * 119.99705 * 19.97433 * 7 5 4 35 35 H 0.96995 * 120.00259 * 179.97438 * 11 10 8 36 36 H 1.09006 * 109.87630 * 262.77691 * 16 5 4 37 37 H 1.08995 * 110.01000 * 141.68729 * 16 5 4 38 38 H 1.09000 * 109.47200 * 299.99946 * 20 18 17 39 39 H 1.08994 * 109.47321 * 60.00622 * 20 18 17 40 40 H 1.07996 * 120.37561 * 359.95854 * 22 21 20 41 41 H 1.07998 * 120.49547 * 180.02562 * 23 22 21 42 42 H 0.96703 * 114.00128 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 1.2269 5 6 3.4777 -1.2004 0.7331 6 1 4.1969 -0.3931 0.8719 7 7 3.9250 -2.4142 1.4207 8 6 5.2568 -2.7306 1.4547 9 1 5.9775 -2.0856 0.9743 10 6 5.6807 -3.8805 2.1067 11 7 4.8024 -4.6664 2.6928 12 14 7.4974 -4.3125 2.1526 13 1 8.2713 -3.2751 1.4246 14 1 7.9562 -4.3740 3.5635 15 1 7.7088 -5.6322 1.5053 16 6 3.2494 -1.4760 -0.7681 17 7 2.0431 -0.7373 -1.1690 18 6 1.4971 -0.7342 -2.4012 19 8 0.4963 -0.0847 -2.6194 20 6 2.1301 -1.5379 -3.5077 21 7 1.3544 -1.3690 -4.7391 22 6 1.6630 -0.3617 -5.6017 23 6 0.9378 -0.2169 -6.7377 24 6 -0.1163 -1.1137 -6.9932 25 8 -0.8551 -0.9907 -8.1183 26 7 -0.3808 -2.0787 -6.1257 27 6 0.3437 -2.2136 -5.0153 28 8 0.0833 -3.1138 -4.2344 29 1 -0.3633 -1.0276 0.0141 30 1 -0.3633 0.5016 -0.8970 31 1 -0.3634 0.5260 0.8829 32 1 2.1398 -0.1284 2.1000 33 1 1.4511 -1.6494 1.4393 34 1 3.2776 -2.9937 1.8520 35 1 5.0984 -5.4701 3.1480 36 1 3.1014 -2.5437 -0.9306 37 1 4.1060 -1.1285 -1.3456 38 1 3.1504 -1.1908 -3.6710 39 1 2.1448 -2.5915 -3.2290 40 1 2.4763 0.3144 -5.3832 41 1 1.1654 0.5748 -7.4361 42 1 -1.5545 -1.6529 -8.2040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989123548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = -35.636873 kcal Electronic energy + Delta-G solvation = -27345.667523 eV Core-core repulsion = 23327.780166 eV Total energy + Delta-G solvation = -4017.887357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.02480 -40.08586 -38.90885 -37.50926 -36.79743 -34.75769 -34.26056 -32.13582 -31.50034 -31.33047 -28.63036 -28.07908 -25.45579 -25.06933 -24.05960 -23.55662 -21.86469 -20.40393 -19.98772 -19.19338 -18.37522 -17.64805 -17.27624 -17.02500 -16.40317 -15.97934 -15.84213 -15.16585 -14.96242 -14.82592 -14.40607 -14.23007 -14.01832 -13.77453 -13.57052 -13.29800 -13.26284 -12.82501 -12.61789 -12.21065 -12.08980 -11.96045 -11.85001 -11.32073 -11.10888 -10.95461 -10.88309 -10.75856 -10.51290 -10.38454 -10.10008 -10.03343 -9.83563 -9.64470 -9.09711 -8.78302 -8.50157 -7.17998 -5.91643 -3.23647 0.42060 1.47822 2.05486 2.52862 2.90785 3.03505 3.34344 3.39578 3.42711 3.63682 3.97774 4.22560 4.34527 4.48267 4.49745 4.76407 4.97286 5.00514 5.05784 5.07022 5.14549 5.20323 5.39280 5.48902 5.56632 5.76099 5.78933 5.80195 6.02045 6.03785 6.09405 6.12979 6.31973 6.36409 6.41669 6.59708 6.76067 6.76384 7.55003 7.58817 7.61316 7.99941 8.11442 8.25306 9.37341 9.90638 10.25048 11.30119 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.002969 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.388793 B = 9427.479623 C =10284.262819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.067 0.933 7 N -0.713 5.713 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.927 5.927 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.065 3.935 17 N -0.602 5.602 18 C 0.517 3.483 19 O -0.539 6.539 20 C 0.078 3.922 21 N -0.509 5.509 22 C 0.215 3.785 23 C -0.290 4.290 24 C 0.457 3.543 25 O -0.450 6.450 26 N -0.614 5.614 27 C 0.660 3.340 28 O -0.525 6.525 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.182 0.818 41 H 0.164 0.836 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 12.722 -17.493 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.085 0.915 7 N -0.353 5.353 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.574 5.574 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.060 4.060 17 N -0.336 5.336 18 C 0.304 3.696 19 O -0.418 6.418 20 C -0.049 4.049 21 N -0.224 5.224 22 C 0.079 3.921 23 C -0.316 4.316 24 C 0.256 3.744 25 O -0.244 6.244 26 N -0.370 5.370 27 C 0.362 3.638 28 O -0.399 6.399 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.199 0.801 41 H 0.182 0.818 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.212 12.219 -17.239 22.025 hybrid contribution 1.048 -0.466 0.237 1.172 sum -5.164 11.753 -17.002 21.304 Atomic orbital electron populations 1.22164 0.94222 1.02740 1.03036 1.21899 0.94866 0.95221 0.84408 0.90737 1.23159 0.97709 1.00455 0.96230 1.21143 0.93199 0.91158 0.88328 0.91519 1.42409 1.06133 1.23789 1.62981 1.19264 0.83847 1.05448 1.29753 0.90863 1.24798 0.97814 0.97544 1.00268 1.69670 1.32559 1.15262 1.39870 0.86117 0.84604 0.78022 0.77363 1.20447 1.21735 1.21731 1.23495 0.84750 0.96873 1.00916 1.48582 1.28719 1.47956 1.08380 1.20125 0.84479 0.82144 0.82882 1.90665 1.24958 1.44177 1.81958 1.21860 0.95258 1.05154 0.82588 1.46064 1.30533 1.26558 1.19293 1.22333 0.95654 0.87224 0.86900 1.20555 1.01435 1.07358 1.02292 1.20415 0.84804 0.86092 0.83128 1.84975 1.46867 1.56554 1.36051 1.69648 1.33672 1.26683 1.07045 1.17270 0.78613 0.82686 0.85255 1.91043 1.68017 1.33292 1.47534 0.92651 0.90017 0.92206 0.89968 0.90341 0.77762 0.93271 0.90456 0.91972 0.85783 0.84719 0.80117 0.81821 0.72672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.71 37.16 0.32 -2.01 16 2 C 0.14 1.94 3.77 -66.41 -0.25 1.69 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.05 6.11 -24.58 -0.15 -2.20 16 5 C 0.17 3.01 3.59 -66.10 -0.24 2.77 16 6 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 7 N -0.71 -16.18 5.18 -51.66 -0.27 -16.45 16 8 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 12 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.07 1.00 6.24 -3.06 -0.02 0.98 16 17 N -0.60 -8.70 3.24 -163.04 -0.53 -9.23 16 18 C 0.52 7.57 7.70 -10.98 -0.08 7.48 16 19 O -0.54 -9.31 14.09 5.56 0.08 -9.23 16 20 C 0.08 0.90 5.02 -5.19 -0.03 0.88 16 21 N -0.51 -6.17 2.08 -123.15 -0.26 -6.43 16 22 C 0.21 1.67 10.40 -16.59 -0.17 1.50 16 23 C -0.29 -2.20 10.03 -39.60 -0.40 -2.59 16 24 C 0.46 4.62 7.91 -16.35 -0.13 4.49 16 25 O -0.45 -3.24 13.55 -17.17 -0.23 -3.47 16 26 N -0.61 -8.76 10.40 -16.72 -0.17 -8.94 16 27 C 0.66 10.74 8.34 -88.43 -0.74 10.00 16 28 O -0.53 -10.78 16.72 4.94 0.08 -10.70 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.29 5.89 -51.93 -0.31 0.99 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 34 H 0.39 9.60 7.71 -40.82 -0.31 9.28 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.12 0.89 8.03 -51.93 -0.42 0.48 16 39 H 0.14 1.77 7.37 -51.93 -0.38 1.39 16 40 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.42 1.63 8.98 45.56 0.41 2.04 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -36.67 357.50 -7.10 -43.77 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.77 Total: 9.02 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: -2.13 Total: 16.14 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.50 Total: -67.00 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.07 Total: -23.40 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.67 -7.10 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989123548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.133 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds