Wall clock time and date at job start Fri Apr 10 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.32886 * 2 1 4 4 C 1.54904 * 110.36492 * 237.64390 * 2 1 3 5 5 C 1.55158 * 101.58206 * 204.15487 * 4 2 1 6 6 H 1.09004 * 110.86642 * 277.06777 * 5 4 2 7 7 N 1.46496 * 110.72160 * 153.86889 * 5 4 2 8 8 C 1.36935 * 120.00221 * 160.02071 * 7 5 4 9 9 H 1.08001 * 120.00176 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00382 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54322 * 102.94332 * 35.50223 * 5 4 2 17 17 N 1.47024 * 107.27064 * 337.81016 * 16 5 4 18 18 C 1.34770 * 125.64839 * 178.90733 * 17 16 5 19 19 O 1.21282 * 120.00065 * 180.02562 * 18 17 16 20 20 C 1.50707 * 120.00042 * 0.02562 * 18 17 16 21 21 N 1.46500 * 109.46872 * 179.97438 * 20 18 17 22 22 C 1.36165 * 119.84697 * 90.00599 * 21 20 18 23 23 C 1.35545 * 119.25410 * 179.97438 * 22 21 20 24 24 C 1.40733 * 119.00310 * 0.02562 * 23 22 21 25 25 O 1.35156 * 120.16583 * 180.02562 * 24 23 22 26 26 N 1.32432 * 119.66788 * 359.97438 * 24 23 22 27 27 C 1.33268 * 120.72430 * 359.72508 * 26 24 23 28 28 O 1.21986 * 119.47123 * 180.27647 * 27 26 24 29 29 H 1.09004 * 109.47187 * 299.21509 * 1 2 3 30 30 H 1.08997 * 109.47322 * 59.21587 * 1 2 3 31 31 H 1.08998 * 109.47382 * 179.22225 * 1 2 3 32 32 H 1.09000 * 111.00319 * 86.07983 * 4 2 1 33 33 H 1.09004 * 111.00857 * 322.22689 * 4 2 1 34 34 H 0.97000 * 120.00132 * 340.01738 * 7 5 4 35 35 H 0.97000 * 119.99717 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.88254 * 97.22934 * 16 5 4 37 37 H 1.08996 * 109.88172 * 218.39470 * 16 5 4 38 38 H 1.08991 * 109.47269 * 300.00214 * 20 18 17 39 39 H 1.08999 * 109.46535 * 60.00561 * 20 18 17 40 40 H 1.07999 * 120.37365 * 359.97438 * 22 21 20 41 41 H 1.08005 * 120.50072 * 180.02562 * 23 22 21 42 42 H 0.96701 * 113.99959 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2267 5 6 3.4777 -1.2006 -0.7329 6 1 4.1967 -0.3932 -0.8718 7 7 3.9249 -2.4144 -1.4205 8 6 5.2567 -2.7309 -1.4545 9 1 5.9775 -2.0859 -0.9740 10 6 5.6804 -3.8813 -2.1056 11 7 6.9605 -4.1857 -2.1378 12 14 4.4336 -4.9981 -2.9348 13 1 4.2447 -4.5689 -4.3438 14 1 4.9270 -6.3985 -2.9059 15 1 3.1379 -4.9148 -2.2140 16 6 3.2493 -1.4761 0.7683 17 7 2.0430 -0.7373 1.1691 18 6 1.4964 -0.7349 2.4010 19 8 0.4953 -0.0860 2.6189 20 6 2.1293 -1.5386 3.5077 21 7 1.3529 -1.3704 4.7386 22 6 0.3270 -2.2222 5.0145 23 6 -0.3830 -2.0559 6.1571 24 6 -0.0389 -1.0048 7.0273 25 8 -0.7308 -0.8177 8.1732 26 7 0.9668 -0.2005 6.7184 27 6 1.6606 -0.3787 5.5946 28 8 2.5859 0.3727 5.3350 29 1 -0.3634 0.5016 0.8970 30 1 -0.3634 0.5259 -0.8828 31 1 -0.3634 -1.0275 -0.0139 32 1 2.1398 -0.1286 -2.0999 33 1 1.4510 -1.6496 -1.4391 34 1 3.2775 -2.9940 -1.8517 35 1 7.2565 -4.9895 -2.5931 36 1 3.1013 -2.5437 0.9309 37 1 4.1064 -1.1266 1.3439 38 1 2.1448 -2.5921 3.2285 39 1 3.1493 -1.1910 3.6715 40 1 0.0817 -3.0212 4.3306 41 1 -1.2005 -2.7200 6.3960 42 1 -0.4192 -0.0715 8.7034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989123549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:45 Heat of formation + Delta-G solvation = -63.742965 kcal Electronic energy + Delta-G solvation = -27378.952409 eV Core-core repulsion = 23359.846281 eV Total energy + Delta-G solvation = -4019.106128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95035 -41.26293 -39.73896 -38.82651 -37.83220 -36.09532 -35.62133 -33.56247 -33.16300 -32.23190 -30.56674 -29.14706 -26.68925 -25.89159 -25.53818 -24.55746 -22.99071 -21.93678 -20.79505 -20.33196 -19.65820 -19.14999 -18.54935 -18.11084 -17.58606 -17.07185 -16.89199 -16.51196 -16.30236 -15.81039 -15.60231 -15.28527 -15.01626 -14.92609 -14.83343 -14.53439 -14.39835 -14.29582 -13.78126 -13.64446 -13.33276 -13.12597 -13.05312 -12.99339 -12.86286 -12.38280 -12.14736 -12.06736 -11.97232 -11.79973 -11.59052 -11.36113 -11.03899 -11.00252 -10.74127 -9.72691 -9.70685 -9.36190 -7.98967 -5.35336 -0.33486 0.64682 1.15572 1.39696 1.42979 1.47126 1.54227 1.91788 2.24609 2.52361 2.65251 3.20589 3.25018 3.30576 3.54551 3.62982 3.75143 3.79174 3.79682 4.07093 4.12068 4.14503 4.29035 4.40496 4.43910 4.45421 4.54515 4.72428 4.76407 4.85926 5.08631 5.11571 5.14358 5.21438 5.28811 5.31075 5.48748 5.80732 6.14191 6.23837 6.39516 6.63292 6.94984 7.00960 7.09947 7.82713 8.02417 9.21919 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.002998 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.170563 B = 9335.991342 C = 9878.758105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.123 4.123 5 C 0.168 3.832 6 H 0.064 0.936 7 N -0.736 5.736 8 C -0.233 4.233 9 H 0.060 0.940 10 C -0.060 4.060 11 N -0.983 5.983 12 Si 0.954 3.046 13 H -0.282 1.282 14 H -0.302 1.302 15 H -0.242 1.242 16 C 0.079 3.921 17 N -0.603 5.603 18 C 0.516 3.484 19 O -0.565 6.565 20 C 0.080 3.920 21 N -0.511 5.511 22 C 0.213 3.787 23 C -0.281 4.281 24 C 0.457 3.543 25 O -0.439 6.439 26 N -0.655 5.655 27 C 0.650 3.350 28 O -0.593 6.593 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.370 0.630 35 H 0.257 0.743 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.232 0.768 41 H 0.204 0.796 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.767 0.686 13.386 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.162 4.162 5 C 0.058 3.942 6 H 0.082 0.918 7 N -0.379 5.379 8 C -0.364 4.364 9 H 0.078 0.922 10 C -0.252 4.252 11 N -0.633 5.633 12 Si 0.781 3.219 13 H -0.209 1.209 14 H -0.229 1.229 15 H -0.167 1.167 16 C -0.046 4.046 17 N -0.336 5.336 18 C 0.304 3.696 19 O -0.445 6.445 20 C -0.046 4.046 21 N -0.226 5.226 22 C 0.079 3.921 23 C -0.306 4.306 24 C 0.258 3.742 25 O -0.235 6.235 26 N -0.414 5.414 27 C 0.352 3.648 28 O -0.472 6.472 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.188 0.812 39 H 0.138 0.862 40 H 0.248 0.752 41 H 0.221 0.779 42 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -20.487 1.752 13.709 24.713 hybrid contribution 0.323 -0.547 -0.618 0.886 sum -20.165 1.205 13.091 24.072 Atomic orbital electron populations 1.22037 0.93096 1.02563 1.03201 1.21991 0.95654 0.95445 0.83816 0.90782 1.23093 0.95029 1.00938 0.97119 1.21281 0.95019 0.88667 0.89216 0.91781 1.42615 1.04032 1.26097 1.65179 1.19003 0.83982 1.05250 1.28141 0.92229 1.25503 0.97484 1.00240 1.01984 1.69890 1.15642 1.28036 1.49745 0.85442 0.79816 0.77729 0.78910 1.20890 1.22872 1.16656 1.23051 0.85682 0.96929 0.98970 1.48565 1.28221 1.47970 1.08878 1.20568 0.84002 0.82185 0.82819 1.90662 1.26936 1.44924 1.82006 1.21964 0.96995 1.04751 0.80886 1.45916 1.29443 1.27328 1.19933 1.23249 0.81985 0.91130 0.95697 1.21083 1.09429 1.04241 0.95810 1.20826 0.82667 0.86038 0.84659 1.84984 1.54396 1.54620 1.29480 1.69500 1.16084 1.34546 1.21285 1.17469 0.84858 0.80860 0.81609 1.90958 1.32921 1.46786 1.76526 0.91971 0.90170 0.92503 0.88206 0.89676 0.79539 0.93393 0.89848 0.91801 0.81166 0.86199 0.75176 0.77925 0.71059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.71 71.98 0.63 -2.73 16 2 C 0.13 3.23 3.77 45.46 0.17 3.40 16 3 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.12 -2.92 6.11 31.98 0.20 -2.72 16 5 C 0.17 5.23 3.59 46.18 0.17 5.39 16 6 H 0.06 2.16 8.12 -2.38 -0.02 2.14 16 7 N -0.74 -29.02 4.98 -317.33 -1.58 -30.60 16 8 C -0.23 -11.87 10.46 84.03 0.88 -11.00 16 9 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 10 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 11 N -0.98 -59.66 13.97 21.65 0.30 -59.35 16 12 Si 0.95 41.22 27.73 68.60 1.90 43.12 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 15 H -0.24 -8.97 6.52 99.48 0.65 -8.32 16 16 C 0.08 2.17 6.24 86.73 0.54 2.71 16 17 N -0.60 -15.56 3.24 -788.17 -2.56 -18.11 16 18 C 0.52 13.81 7.70 87.66 0.67 14.48 16 19 O -0.57 -18.33 14.09 -3.04 -0.04 -18.37 16 20 C 0.08 1.68 5.02 85.64 0.43 2.11 16 21 N -0.51 -11.38 2.08 -661.78 -1.38 -12.76 16 22 C 0.21 2.55 10.40 83.40 0.87 3.42 16 23 C -0.28 -3.21 10.03 22.26 0.22 -2.99 16 24 C 0.46 8.23 7.91 85.21 0.67 8.90 16 25 O -0.44 -5.23 13.55 -84.34 -1.14 -6.37 16 26 N -0.65 -18.29 10.40 -438.82 -4.56 -22.86 16 27 C 0.65 20.87 8.34 179.59 1.50 22.37 16 28 O -0.59 -24.67 16.72 -5.27 -0.09 -24.76 16 29 H 0.06 1.69 5.89 -2.38 -0.01 1.68 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.91 7.92 -2.38 -0.02 1.90 16 34 H 0.37 13.81 5.58 -92.71 -0.52 13.30 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.08 2.20 8.03 -2.39 -0.02 2.18 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.17 1.91 8.03 -2.39 -0.02 1.89 16 39 H 0.12 2.94 7.37 -2.39 -0.02 2.92 16 40 H 0.23 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.43 2.59 8.98 -74.06 -0.66 1.93 16 Total: -1.00 -85.41 354.38 -1.90 -87.31 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.17 Total: 22.21 kcal Atomic # 6 Polarization: 33.13 SS G_CDS: 7.41 Total: 40.54 kcal Atomic # 7 Polarization: -133.90 SS G_CDS: -9.78 Total: -143.68 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -1.27 Total: -49.50 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.90 Total: 43.12 kcal Total: -85.41 -1.90 -87.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989123549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.566 kcal (2) G-P(sol) polarization free energy of solvation -85.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds