Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87577 * 2 1 4 4 C 1.54319 * 109.88298 * 121.18202 * 2 1 3 5 5 C 1.55156 * 102.94283 * 141.61191 * 4 2 1 6 6 H 1.09005 * 111.03642 * 206.40940 * 5 4 2 7 7 N 1.46496 * 111.00968 * 82.56806 * 5 4 2 8 8 C 1.36937 * 119.99758 * 161.34652 * 7 5 4 9 9 H 1.07991 * 120.00447 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99535 * 179.72436 * 8 7 5 11 11 N 1.31621 * 120.00147 * 0.28539 * 10 8 7 12 12 Si 1.86800 * 120.00072 * 180.27708 * 10 8 7 13 13 H 1.48499 * 109.47018 * 60.00043 * 12 10 8 14 14 H 1.48492 * 109.47501 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47141 * 300.00342 * 12 10 8 16 16 C 1.54915 * 101.58060 * 324.49359 * 5 4 2 17 17 N 1.47028 * 109.87916 * 238.98714 * 2 1 3 18 18 C 1.34777 * 125.64886 * 61.61019 * 17 2 1 19 19 O 1.21673 * 120.00266 * 159.05974 * 18 17 2 20 20 C 1.46894 * 119.99835 * 339.05869 * 18 17 2 21 21 C 1.39433 * 120.82296 * 216.33017 * 20 18 17 22 22 N 1.32563 * 119.70365 * 179.97438 * 21 20 18 23 23 C 1.31850 * 121.60992 * 0.02562 * 22 21 20 24 24 O 1.34695 * 119.11089 * 179.97438 * 23 22 21 25 25 N 1.35656 * 121.77898 * 359.97061 * 23 22 21 26 26 C 1.46500 * 119.95796 * 179.97438 * 25 23 22 27 27 C 1.35020 * 120.08707 * 359.78395 * 25 23 22 28 28 O 1.21835 * 120.76646 * 180.23374 * 27 25 23 29 29 H 1.08994 * 109.47187 * 202.34032 * 1 2 3 30 30 H 1.09003 * 109.46963 * 322.33973 * 1 2 3 31 31 H 1.08998 * 109.46903 * 82.33604 * 1 2 3 32 32 H 1.08994 * 110.71865 * 23.24308 * 4 2 1 33 33 H 1.09008 * 110.71578 * 259.97109 * 4 2 1 34 34 H 0.96999 * 119.99917 * 341.35574 * 7 5 4 35 35 H 0.96996 * 120.00024 * 179.97438 * 11 10 8 36 36 H 1.08994 * 110.36479 * 155.85539 * 16 5 4 37 37 H 1.09004 * 110.36534 * 278.06343 * 16 5 4 38 38 H 1.07999 * 120.14417 * 359.96441 * 21 20 18 39 39 H 0.96694 * 116.99624 * 359.97438 * 24 23 22 40 40 H 1.09003 * 109.46770 * 0.02562 * 26 25 23 41 41 H 1.08998 * 109.47342 * 120.00166 * 26 25 23 42 42 H 1.08992 * 109.47489 * 240.00911 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7514 1.2415 5 6 3.2876 -1.5152 0.6901 6 1 3.4859 -2.4129 1.2758 7 7 4.4674 -0.6478 0.6482 8 6 5.7188 -1.1976 0.5655 9 1 5.8361 -2.2705 0.5306 10 6 6.8364 -0.3754 0.5201 11 7 6.6936 0.9323 0.5622 12 14 8.5431 -1.1251 0.3993 13 1 8.6419 -1.9337 -0.8423 14 1 9.5585 -0.0420 0.3673 15 1 8.7858 -1.9958 1.5776 16 6 2.8145 -1.8783 -0.7397 17 7 2.0299 -0.7124 -1.1850 18 6 1.8073 -0.3585 -2.4663 19 8 2.5468 -0.7593 -3.3455 20 6 0.6720 0.5113 -2.8013 21 6 -0.0458 0.3260 -3.9823 22 7 -1.0669 1.1236 -4.2624 23 6 -1.4270 2.0968 -3.4490 24 8 -2.4723 2.8776 -3.7837 25 7 -0.7732 2.3330 -2.2841 26 6 -1.2070 3.4259 -1.4103 27 6 0.2745 1.5596 -1.9270 28 8 0.8679 1.7580 -0.8816 29 1 -0.3633 -0.9505 0.3906 30 1 -0.3633 0.8136 0.6279 31 1 -0.3633 0.1371 -1.0185 32 1 1.3051 -1.4483 1.6160 33 1 2.3530 -0.0489 2.0199 34 1 4.3621 0.3160 0.6793 35 1 7.4745 1.5068 0.5309 36 1 3.6715 -2.0319 -1.3953 37 1 2.1901 -2.7716 -0.7172 38 1 0.2292 -0.4636 -4.6659 39 1 -2.9157 2.6824 -4.6205 40 1 -2.0619 3.9320 -1.8587 41 1 -1.4924 3.0228 -0.4386 42 1 -0.3898 4.1358 -1.2833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989286504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = 33.198655 kcal Electronic energy + Delta-G solvation = -28782.357536 eV Core-core repulsion = 24767.455112 eV Total energy + Delta-G solvation = -4014.902424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46836 -40.10828 -38.68415 -37.69904 -36.72141 -35.55615 -33.79668 -31.54414 -30.80877 -30.60405 -28.35348 -28.28994 -25.78886 -24.83247 -24.20650 -23.47392 -22.05131 -20.36587 -19.83605 -19.23895 -18.55977 -17.68868 -17.30057 -17.09425 -16.45386 -15.96390 -15.53097 -15.14179 -14.89081 -14.65914 -14.28492 -14.08415 -13.76636 -13.64991 -13.26045 -13.11173 -12.88317 -12.87035 -12.51350 -12.25883 -11.90812 -11.48328 -11.22650 -11.14901 -10.92775 -10.77693 -10.59392 -10.54410 -10.39377 -10.27588 -9.95371 -9.58391 -9.51071 -9.20423 -8.87562 -8.42128 -7.80616 -6.85970 -5.67629 -2.96564 0.23197 1.45340 1.58263 2.80179 3.00134 3.51318 3.51884 3.55638 3.56680 3.62935 3.83252 4.21680 4.66882 4.71869 4.90963 4.94680 5.19241 5.21341 5.22582 5.36055 5.40657 5.50516 5.63706 5.71910 5.76296 5.82796 5.89978 6.09047 6.12449 6.17923 6.30743 6.44042 6.46681 6.59970 6.72486 6.85124 6.90781 7.08654 7.34915 7.77900 7.91701 8.18637 8.50125 8.65359 9.61624 10.18641 10.53511 11.54709 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.003655 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.477726 B = 7658.688936 C = 7812.312351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.134 3.866 3 H 0.134 0.866 4 C -0.144 4.144 5 C 0.169 3.831 6 H 0.067 0.933 7 N -0.710 5.710 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.010 4.010 11 N -0.930 5.930 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C 0.079 3.921 17 N -0.593 5.593 18 C 0.601 3.399 19 O -0.541 6.541 20 C -0.327 4.327 21 C 0.242 3.758 22 N -0.593 5.593 23 C 0.595 3.405 24 O -0.459 6.459 25 N -0.511 5.511 26 C 0.059 3.941 27 C 0.538 3.462 28 O -0.484 6.484 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.182 0.818 39 H 0.441 0.559 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.738 4.031 -6.167 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 H 0.151 0.849 4 C -0.183 4.183 5 C 0.056 3.944 6 H 0.085 0.915 7 N -0.350 5.350 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.207 4.207 11 N -0.578 5.578 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.046 4.046 17 N -0.325 5.325 18 C 0.388 3.612 19 O -0.420 6.420 20 C -0.338 4.338 21 C 0.098 3.902 22 N -0.335 5.335 23 C 0.296 3.704 24 O -0.256 6.256 25 N -0.240 5.240 26 C -0.083 4.083 27 C 0.342 3.658 28 O -0.360 6.360 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.199 0.801 39 H 0.303 0.697 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.111 4.078 -6.183 25.223 hybrid contribution 0.847 -0.043 -0.071 0.851 sum -23.263 4.035 -6.254 24.425 Atomic orbital electron populations 1.22827 0.96837 1.00147 1.00067 1.22527 0.92375 0.98042 0.83853 0.84944 1.23213 0.98077 0.99738 0.97231 1.21331 0.87057 0.94225 0.91744 0.91484 1.42295 1.00178 1.05218 1.87322 1.19190 0.83479 0.91766 1.42864 0.91118 1.24740 0.97861 0.95319 1.02748 1.69665 1.28965 1.01951 1.57223 0.86270 0.84334 0.77725 0.77862 1.21224 1.21780 1.21289 1.23262 0.94852 0.86125 1.00378 1.48069 1.51690 1.28425 1.04301 1.16641 0.82828 0.79776 0.81914 1.90800 1.46232 1.57260 1.47702 1.21724 1.06910 1.05205 0.99990 1.22831 0.84264 0.91893 0.91191 1.68416 1.23807 1.10255 1.31029 1.20417 0.83233 0.84756 0.82013 1.84139 1.40802 1.53716 1.46988 1.46919 1.28529 1.30918 1.17645 1.22198 1.02356 0.88840 0.94890 1.17404 0.78723 0.83129 0.86588 1.91104 1.52151 1.68875 1.23920 0.94710 0.92051 0.93893 0.91431 0.90120 0.78016 0.93531 0.89973 0.93194 0.80123 0.69675 0.88382 0.89486 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.62 37.16 0.28 -1.74 16 2 C 0.13 2.38 2.68 -66.95 -0.18 2.20 16 3 H 0.13 2.70 5.22 -57.72 -0.30 2.40 16 4 C -0.14 -2.48 6.04 -24.90 -0.15 -2.63 16 5 C 0.17 3.50 3.69 -65.78 -0.24 3.26 16 6 H 0.07 1.34 8.13 -51.93 -0.42 0.91 16 7 N -0.71 -18.60 5.27 -51.35 -0.27 -18.87 16 8 C -0.24 -6.96 9.98 -15.06 -0.15 -7.11 16 9 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -29.27 13.06 55.49 0.72 -28.54 16 12 Si 0.91 23.29 29.55 -169.99 -5.02 18.27 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 C 0.08 1.61 6.72 -2.53 -0.02 1.60 16 17 N -0.59 -11.73 3.06 -165.62 -0.51 -12.23 16 18 C 0.60 12.02 7.32 -12.76 -0.09 11.93 16 19 O -0.54 -12.54 17.17 5.21 0.09 -12.46 16 20 C -0.33 -5.11 4.66 -104.44 -0.49 -5.59 16 21 C 0.24 2.98 10.86 -16.79 -0.18 2.79 16 22 N -0.59 -5.82 10.31 -13.97 -0.14 -5.96 16 23 C 0.59 5.01 8.60 -88.68 -0.76 4.25 16 24 O -0.46 -1.88 11.91 -15.84 -0.19 -2.07 16 25 N -0.51 -5.23 2.99 -128.41 -0.38 -5.61 16 26 C 0.06 0.42 10.10 59.85 0.60 1.02 16 27 C 0.54 7.72 4.82 -14.64 -0.07 7.65 16 28 O -0.48 -7.99 9.11 5.07 0.05 -7.94 16 29 H 0.03 0.47 7.57 -51.93 -0.39 0.07 16 30 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 31 H 0.04 0.62 3.67 -52.15 -0.19 0.42 16 32 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 33 H 0.08 1.43 8.14 -51.92 -0.42 1.00 16 34 H 0.39 10.92 7.82 -40.82 -0.32 10.60 16 35 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.08 1.95 7.92 -51.93 -0.41 1.54 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.18 1.98 8.04 -52.49 -0.42 1.56 16 39 H 0.44 -0.21 9.08 45.56 0.41 0.20 16 40 H 0.10 0.45 6.77 -51.93 -0.35 0.10 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -37.66 340.40 -6.49 -44.16 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.42 Total: 8.91 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -1.54 Total: 17.21 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -0.58 Total: -71.22 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.66 -6.49 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989286504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.355 kcal (2) G-P(sol) polarization free energy of solvation -37.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds