Wall clock time and date at job start Fri Apr 10 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34952 * 119.70254 * 2 1 4 4 C 1.38322 * 119.02001 * 179.72334 * 3 2 1 5 5 C 1.47308 * 120.73475 * 180.30116 * 4 3 2 6 6 O 1.21621 * 119.99815 * 255.23626 * 5 4 3 7 7 N 1.34779 * 120.00146 * 75.23959 * 5 4 3 8 8 C 1.46927 * 120.62764 * 4.94239 * 7 5 4 9 9 C 1.52761 * 109.00553 * 233.58463 * 8 7 5 10 10 C 1.53033 * 109.38366 * 305.58776 * 9 8 7 11 11 N 1.46510 * 109.45963 * 181.26074 * 10 9 8 12 12 C 1.36935 * 119.99827 * 84.93529 * 11 10 9 13 13 H 1.08001 * 119.99973 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.00119 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99846 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00070 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46943 * 89.99908 * 16 14 12 18 18 H 1.48504 * 109.47023 * 209.99410 * 16 14 12 19 19 H 1.48497 * 109.47047 * 329.99821 * 16 14 12 20 20 C 1.53038 * 109.53981 * 61.24683 * 10 9 8 21 21 C 1.46928 * 120.63173 * 185.22556 * 7 5 4 22 22 C 1.42094 * 118.52816 * 0.27946 * 4 3 2 23 23 O 1.35013 * 120.33626 * 180.02562 * 22 4 3 24 24 N 1.32216 * 119.33078 * 0.02562 * 22 4 3 25 25 C 1.33321 * 120.93125 * 359.97438 * 24 22 4 26 26 O 1.21915 * 119.20191 * 180.02562 * 25 24 22 27 27 H 1.08999 * 109.47567 * 89.99878 * 1 2 3 28 28 H 1.09002 * 109.47165 * 209.99956 * 1 2 3 29 29 H 1.08996 * 109.47581 * 329.99444 * 1 2 3 30 30 H 1.08004 * 120.49069 * 0.02562 * 3 2 1 31 31 H 1.08992 * 109.58964 * 353.42422 * 8 7 5 32 32 H 1.09004 * 109.58137 * 113.84997 * 8 7 5 33 33 H 1.09007 * 109.55801 * 185.55534 * 9 8 7 34 34 H 1.08993 * 109.35933 * 65.50194 * 9 8 7 35 35 H 1.09000 * 109.46795 * 301.21822 * 10 9 8 36 36 H 0.97000 * 119.99999 * 264.93732 * 11 10 9 37 37 H 0.97000 * 120.00156 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.50117 * 178.67895 * 20 10 9 39 39 H 1.09004 * 109.52638 * 58.59469 * 20 10 9 40 40 H 1.08999 * 109.58701 * 246.15331 * 21 7 5 41 41 H 1.09004 * 109.58194 * 6.44000 * 21 7 5 42 42 H 0.96700 * 114.00195 * 185.00766 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1336 1.1722 0.0000 4 6 3.5167 1.1557 0.0058 5 6 4.2846 2.4128 0.0127 6 8 4.8349 2.7948 -1.0024 7 7 4.3773 3.1397 1.1439 8 6 3.8104 2.6395 2.4037 9 6 2.8722 3.6974 2.9818 10 6 3.6226 5.0246 3.1131 11 7 2.7332 6.0327 3.6955 12 6 2.5986 6.1234 5.0552 13 1 3.1478 5.4516 5.6982 14 6 1.7555 7.0782 5.6070 15 7 1.0859 7.8965 4.8233 16 14 1.5714 7.2015 7.4618 17 1 2.5843 8.1459 7.9980 18 1 0.2104 7.6953 7.7924 19 1 1.7731 5.8617 8.0694 20 6 4.0847 5.4902 1.7305 21 6 5.0416 4.4502 1.1393 22 6 4.1805 -0.1007 0.0055 23 8 5.5293 -0.1593 0.0117 24 7 3.4638 -1.2117 -0.0008 25 6 2.1313 -1.1677 -0.0063 26 8 1.5017 -2.2117 -0.0116 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.5968 2.1094 0.0004 31 1 3.2526 1.7223 2.2147 32 1 4.6142 2.4412 3.1127 33 1 2.5232 3.3780 3.9639 34 1 2.0189 3.8262 2.3161 35 1 4.4899 4.8891 3.7593 36 1 2.2396 6.6357 3.1179 37 1 0.4970 8.5640 5.2089 38 1 4.5986 6.4471 1.8217 39 1 3.2202 5.6026 1.0761 40 1 5.9479 4.4026 1.7431 41 1 5.2981 4.7262 0.1164 42 1 5.8844 -1.0554 -0.0662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997293676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:12 Heat of formation + Delta-G solvation = -42.397901 kcal Electronic energy + Delta-G solvation = -27701.469876 eV Core-core repulsion = 23683.289339 eV Total energy + Delta-G solvation = -4018.180537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.26816 -40.12892 -39.02172 -37.48047 -37.06617 -35.04304 -34.58404 -32.51732 -31.70704 -30.71100 -29.30620 -28.03239 -25.60968 -25.05250 -23.99770 -23.11758 -22.57759 -20.77049 -20.20632 -19.41834 -18.63763 -17.88141 -17.14691 -17.06744 -16.63444 -16.17739 -15.67812 -15.09675 -14.96410 -14.87516 -14.53273 -14.23227 -13.93417 -13.86314 -13.70709 -13.59706 -13.44556 -13.19949 -12.99392 -12.44037 -12.15214 -11.87942 -11.68788 -11.32871 -11.07576 -10.96669 -10.91393 -10.60635 -10.53807 -10.45378 -10.31477 -9.95372 -9.92300 -9.76382 -9.03647 -8.91800 -8.64557 -7.08153 -5.86914 -3.16538 0.18534 1.04321 1.86845 2.41211 2.81066 2.90975 3.33049 3.36306 3.41979 3.43428 3.73917 3.99787 4.21246 4.49260 4.55840 4.75103 4.79448 4.87046 4.94215 5.16913 5.21051 5.21840 5.28645 5.43710 5.48886 5.54413 5.62393 5.81431 5.85372 5.89108 6.10864 6.22223 6.26311 6.38119 6.46426 6.68274 6.76571 6.89644 7.30464 7.34857 7.60078 7.72815 8.01771 8.31300 9.42950 9.99227 10.33726 11.35448 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003285 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.002590 B = 8522.476805 C = 9478.741237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.517 5.517 3 C 0.243 3.757 4 C -0.289 4.289 5 C 0.587 3.413 6 O -0.529 6.529 7 N -0.595 5.595 8 C 0.108 3.892 9 C -0.151 4.151 10 C 0.178 3.822 11 N -0.724 5.724 12 C -0.242 4.242 13 H 0.070 0.930 14 C -0.011 4.011 15 N -0.932 5.932 16 Si 0.905 3.095 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.139 4.139 21 C 0.117 3.883 22 C 0.488 3.512 23 O -0.434 6.434 24 N -0.611 5.611 25 C 0.654 3.346 26 O -0.528 6.528 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.191 0.809 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -13.253 -10.396 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.230 5.230 3 C 0.103 3.897 4 C -0.301 4.301 5 C 0.372 3.628 6 O -0.406 6.406 7 N -0.328 5.328 8 C -0.015 4.015 9 C -0.192 4.192 10 C 0.068 3.932 11 N -0.364 5.364 12 C -0.374 4.374 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.580 5.580 16 Si 0.736 3.264 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.178 4.178 21 C -0.005 4.005 22 C 0.286 3.714 23 O -0.228 6.228 24 N -0.369 5.369 25 C 0.356 3.644 26 O -0.402 6.402 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.208 0.792 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 3.509 -14.025 -10.673 17.970 hybrid contribution -0.572 0.468 0.951 1.204 sum 2.937 -13.557 -9.722 16.939 Atomic orbital electron populations 1.22357 0.75191 1.06106 1.04779 1.46175 1.11092 1.06989 1.58793 1.22675 0.91271 0.91502 0.84288 1.19428 0.92415 0.94138 1.24167 1.17259 0.80135 0.82121 0.83301 1.90806 1.46681 1.70283 1.32787 1.48130 1.56392 1.19561 1.08673 1.21772 0.97658 0.97363 0.84712 1.22624 0.98358 0.97088 1.01148 1.20168 0.92880 0.88378 0.91793 1.42428 1.51654 1.37937 1.04377 1.19222 1.21279 1.13820 0.83031 0.91157 1.24739 0.99727 0.98546 0.97709 1.69654 1.32113 1.22623 1.33581 0.86223 0.77077 0.77645 0.85413 1.21659 1.21774 1.20748 1.22224 0.99350 0.98299 0.97926 1.21689 0.95144 0.80972 1.02725 1.20108 0.84526 0.88182 0.78596 1.85042 1.14713 1.37708 1.85371 1.69660 1.05722 1.27201 1.34304 1.17373 0.84633 0.83049 0.79390 1.91002 1.65856 1.30021 1.53351 0.89781 0.87912 0.88614 0.79169 0.91291 0.91066 0.90477 0.92341 0.93256 0.78248 0.93442 0.90283 0.91773 0.91197 0.89107 0.72331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.34 59.84 0.62 0.96 16 2 N -0.52 -4.78 2.96 -128.88 -0.38 -5.16 16 3 C 0.24 2.01 9.42 -16.15 -0.15 1.86 16 4 C -0.29 -3.11 3.97 -104.70 -0.42 -3.53 16 5 C 0.59 7.53 6.75 -12.57 -0.08 7.45 16 6 O -0.53 -8.49 16.54 5.26 0.09 -8.41 16 7 N -0.59 -7.22 2.98 -174.34 -0.52 -7.74 16 8 C 0.11 1.23 6.29 -3.93 -0.02 1.21 16 9 C -0.15 -2.15 5.64 -26.84 -0.15 -2.31 16 10 C 0.18 3.03 2.73 -67.89 -0.19 2.84 16 11 N -0.72 -16.39 5.12 -53.38 -0.27 -16.66 16 12 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 13 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -26.72 13.06 55.49 0.72 -25.99 16 16 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.14 -1.98 5.55 -26.61 -0.15 -2.13 16 21 C 0.12 1.46 6.42 -3.71 -0.02 1.43 16 22 C 0.49 5.42 7.93 -15.91 -0.13 5.29 16 23 O -0.43 -4.07 13.08 -16.75 -0.22 -4.29 16 24 N -0.61 -7.82 10.38 -16.47 -0.17 -7.99 16 25 C 0.65 8.65 8.32 -88.50 -0.74 7.91 16 26 O -0.53 -8.59 16.67 5.00 0.08 -8.51 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.72 7.37 -51.93 -0.38 0.34 16 29 H 0.10 0.32 8.02 -51.93 -0.42 -0.10 16 30 H 0.19 0.99 8.05 -52.48 -0.42 0.56 16 31 H 0.07 0.69 5.80 -51.93 -0.30 0.39 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.38 9.37 7.80 -40.82 -0.32 9.05 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.16 7.03 -51.93 -0.37 0.79 16 42 H 0.42 2.03 8.98 45.56 0.41 2.44 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -35.93 354.73 -6.74 -42.67 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.72 Total: 6.24 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -1.67 Total: 14.22 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.62 Total: -63.54 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.93 -6.74 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997293676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.276 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds