Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34952 * 119.70254 * 2 1 4 4 C 1.38322 * 119.02001 * 179.72334 * 3 2 1 5 5 C 1.47308 * 120.73475 * 180.30116 * 4 3 2 6 6 O 1.21621 * 119.99815 * 255.23626 * 5 4 3 7 7 N 1.34779 * 120.00146 * 75.23959 * 5 4 3 8 8 C 1.46927 * 120.62764 * 4.94239 * 7 5 4 9 9 C 1.52761 * 109.00553 * 233.58463 * 8 7 5 10 10 C 1.53033 * 109.38366 * 305.58776 * 9 8 7 11 11 N 1.46510 * 109.45963 * 181.26074 * 10 9 8 12 12 C 1.36935 * 119.99827 * 84.93529 * 11 10 9 13 13 H 1.08001 * 119.99973 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.00119 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99846 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00070 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46943 * 89.99908 * 16 14 12 18 18 H 1.48504 * 109.47023 * 209.99410 * 16 14 12 19 19 H 1.48497 * 109.47047 * 329.99821 * 16 14 12 20 20 C 1.53038 * 109.53981 * 61.24683 * 10 9 8 21 21 C 1.46928 * 120.63173 * 185.22556 * 7 5 4 22 22 C 1.42094 * 118.52816 * 0.27946 * 4 3 2 23 23 O 1.35013 * 120.33626 * 180.02562 * 22 4 3 24 24 N 1.32216 * 119.33078 * 0.02562 * 22 4 3 25 25 C 1.33321 * 120.93125 * 359.97438 * 24 22 4 26 26 O 1.21915 * 119.20191 * 180.02562 * 25 24 22 27 27 H 1.08999 * 109.47567 * 89.99878 * 1 2 3 28 28 H 1.09002 * 109.47165 * 209.99956 * 1 2 3 29 29 H 1.08996 * 109.47581 * 329.99444 * 1 2 3 30 30 H 1.08004 * 120.49069 * 0.02562 * 3 2 1 31 31 H 1.08992 * 109.58964 * 353.42422 * 8 7 5 32 32 H 1.09004 * 109.58137 * 113.84997 * 8 7 5 33 33 H 1.09007 * 109.55801 * 185.55534 * 9 8 7 34 34 H 1.08993 * 109.35933 * 65.50194 * 9 8 7 35 35 H 1.09000 * 109.46795 * 301.21822 * 10 9 8 36 36 H 0.97000 * 119.99999 * 264.93732 * 11 10 9 37 37 H 0.97000 * 120.00156 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.50117 * 178.67895 * 20 10 9 39 39 H 1.09004 * 109.52638 * 58.59469 * 20 10 9 40 40 H 1.08999 * 109.58701 * 246.15331 * 21 7 5 41 41 H 1.09004 * 109.58194 * 6.44000 * 21 7 5 42 42 H 0.96700 * 114.00195 * 185.00766 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1336 1.1722 0.0000 4 6 3.5167 1.1557 0.0058 5 6 4.2846 2.4128 0.0127 6 8 4.8349 2.7948 -1.0024 7 7 4.3773 3.1397 1.1439 8 6 3.8104 2.6395 2.4037 9 6 2.8722 3.6974 2.9818 10 6 3.6226 5.0246 3.1131 11 7 2.7332 6.0327 3.6955 12 6 2.5986 6.1234 5.0552 13 1 3.1478 5.4516 5.6982 14 6 1.7555 7.0782 5.6070 15 7 1.0859 7.8965 4.8233 16 14 1.5714 7.2015 7.4618 17 1 2.5843 8.1459 7.9980 18 1 0.2104 7.6953 7.7924 19 1 1.7731 5.8617 8.0694 20 6 4.0847 5.4902 1.7305 21 6 5.0416 4.4502 1.1393 22 6 4.1805 -0.1007 0.0055 23 8 5.5293 -0.1593 0.0117 24 7 3.4638 -1.2117 -0.0008 25 6 2.1313 -1.1677 -0.0063 26 8 1.5017 -2.2117 -0.0116 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.5968 2.1094 0.0004 31 1 3.2526 1.7223 2.2147 32 1 4.6142 2.4412 3.1127 33 1 2.5232 3.3780 3.9639 34 1 2.0189 3.8262 2.3161 35 1 4.4899 4.8891 3.7593 36 1 2.2396 6.6357 3.1179 37 1 0.4970 8.5640 5.2089 38 1 4.5986 6.4471 1.8217 39 1 3.2202 5.6026 1.0761 40 1 5.9479 4.4026 1.7431 41 1 5.2981 4.7262 0.1164 42 1 5.8844 -1.0554 -0.0662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997293676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = -73.007435 kcal Electronic energy + Delta-G solvation = -27702.797205 eV Core-core repulsion = 23683.289339 eV Total energy + Delta-G solvation = -4019.507866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.10736 -41.15361 -39.84042 -38.66477 -38.02694 -36.11286 -35.81838 -33.92950 -32.92602 -31.74402 -30.86350 -28.66551 -26.79946 -26.08483 -25.13836 -24.32510 -23.81449 -21.92629 -21.01127 -20.53485 -19.43494 -19.09705 -18.73017 -17.90799 -17.53324 -17.17793 -16.66411 -16.49880 -16.02263 -15.64596 -15.47742 -15.41741 -15.33170 -15.06077 -14.89176 -14.63788 -14.49709 -14.29834 -13.74127 -13.48146 -13.32370 -13.13109 -12.82839 -12.63984 -12.60110 -12.31421 -12.14642 -12.11577 -11.94290 -11.66827 -11.45148 -11.33939 -11.24863 -10.94915 -10.82709 -9.83066 -9.68701 -8.95303 -7.89949 -5.17222 -0.54931 0.16415 1.09757 1.48644 1.51042 1.52105 1.59448 1.93080 2.07224 2.44606 2.59773 2.97746 3.23839 3.43807 3.45983 3.84517 3.92128 3.99162 4.06923 4.11854 4.17191 4.22418 4.39143 4.42370 4.45845 4.68086 4.75733 4.79543 4.86318 4.89694 4.90847 5.05648 5.08753 5.14596 5.35402 5.52755 5.58725 5.66723 6.05769 6.31221 6.33348 6.47630 6.85199 7.02454 7.39665 8.16557 8.38304 9.33390 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003285 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.002590 B = 8522.476805 C = 9478.741237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.509 5.509 3 C 0.267 3.733 4 C -0.309 4.309 5 C 0.596 3.404 6 O -0.563 6.563 7 N -0.592 5.592 8 C 0.119 3.881 9 C -0.139 4.139 10 C 0.171 3.829 11 N -0.736 5.736 12 C -0.232 4.232 13 H 0.077 0.923 14 C -0.073 4.073 15 N -0.969 5.969 16 Si 0.963 3.037 17 H -0.292 1.292 18 H -0.300 1.300 19 H -0.269 1.269 20 C -0.127 4.127 21 C 0.124 3.876 22 C 0.491 3.509 23 O -0.438 6.438 24 N -0.636 5.636 25 C 0.647 3.353 26 O -0.571 6.571 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.230 0.770 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -13.845 -10.345 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.220 5.220 3 C 0.126 3.874 4 C -0.321 4.321 5 C 0.382 3.618 6 O -0.442 6.442 7 N -0.324 5.324 8 C -0.004 4.004 9 C -0.180 4.180 10 C 0.063 3.937 11 N -0.376 5.376 12 C -0.364 4.364 13 H 0.095 0.905 14 C -0.265 4.265 15 N -0.620 5.620 16 Si 0.793 3.207 17 H -0.219 1.219 18 H -0.227 1.227 19 H -0.194 1.194 20 C -0.166 4.166 21 C 0.001 3.999 22 C 0.291 3.709 23 O -0.234 6.234 24 N -0.395 5.395 25 C 0.349 3.651 26 O -0.449 6.449 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.246 0.754 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 3.675 -14.656 -10.616 18.467 hybrid contribution -0.532 0.640 0.885 1.215 sum 3.143 -14.016 -9.731 17.350 Atomic orbital electron populations 1.22674 0.72971 1.07186 1.06172 1.46164 1.12400 1.06252 1.57187 1.23190 0.90600 0.92196 0.81373 1.19326 0.93368 0.92995 1.26458 1.17374 0.79536 0.82283 0.82623 1.90797 1.48160 1.71266 1.33953 1.48138 1.56072 1.19340 1.08832 1.21707 0.97481 0.96900 0.84313 1.22379 0.98677 0.96012 1.00896 1.20434 0.92030 0.88499 0.92774 1.42631 1.52368 1.39142 1.03415 1.19591 1.19617 1.12582 0.84617 0.90539 1.25428 1.00640 0.99180 1.01298 1.69794 1.33550 1.23744 1.34926 0.85287 0.76203 0.77869 0.81295 1.21938 1.22678 1.19368 1.22063 0.99593 0.98630 0.96277 1.21597 0.94947 0.80607 1.02733 1.20139 0.84903 0.87905 0.77919 1.85025 1.14031 1.39402 1.84945 1.69569 1.06026 1.28222 1.35664 1.17489 0.84834 0.83564 0.79237 1.90968 1.66665 1.31704 1.55575 0.88287 0.89211 0.85160 0.75404 0.89221 0.90221 0.91764 0.91859 0.93751 0.79589 0.94241 0.90944 0.91937 0.90012 0.89118 0.70362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.34 127.77 1.32 1.78 16 2 N -0.51 -8.13 2.96 -679.96 -2.01 -10.14 16 3 C 0.27 3.51 9.42 84.23 0.79 4.30 16 4 C -0.31 -5.85 3.97 -19.92 -0.08 -5.93 16 5 C 0.60 13.75 6.75 86.63 0.58 14.34 16 6 O -0.56 -17.03 16.54 -4.10 -0.07 -17.09 16 7 N -0.59 -12.69 2.98 -823.73 -2.45 -15.15 16 8 C 0.12 2.32 6.29 86.22 0.54 2.86 16 9 C -0.14 -3.60 5.64 30.53 0.17 -3.43 16 10 C 0.17 5.53 2.73 45.01 0.12 5.65 16 11 N -0.74 -32.82 5.12 -322.81 -1.65 -34.47 16 12 C -0.23 -11.73 9.93 84.03 0.83 -10.90 16 13 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 14 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 15 N -0.97 -56.12 13.06 21.65 0.28 -55.83 16 16 Si 0.96 43.64 29.55 68.60 2.03 45.66 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 C -0.13 -3.41 5.55 30.67 0.17 -3.24 16 21 C 0.12 2.79 6.42 86.36 0.55 3.35 16 22 C 0.49 10.08 7.93 85.59 0.68 10.76 16 23 O -0.44 -7.50 13.08 -82.85 -1.08 -8.59 16 24 N -0.64 -15.63 10.38 -438.20 -4.55 -20.18 16 25 C 0.65 16.44 8.32 179.61 1.49 17.93 16 26 O -0.57 -18.59 16.67 -5.04 -0.08 -18.67 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.13 7.37 -2.39 -0.02 1.11 16 29 H 0.13 0.30 8.02 -2.39 -0.02 0.28 16 30 H 0.23 1.21 8.05 -2.91 -0.02 1.19 16 31 H 0.09 1.45 5.80 -2.39 -0.01 1.44 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.37 18.17 7.80 -92.71 -0.72 17.45 16 37 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 2.13 7.03 -2.39 -0.02 2.12 16 42 H 0.44 3.68 8.98 -74.06 -0.67 3.01 16 Total: -1.00 -78.57 354.73 -2.24 -80.82 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.31 Total: 19.65 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 7.66 Total: 34.00 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -10.39 Total: -135.78 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.24 Total: -44.35 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -78.57 -2.24 -80.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997293676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.809 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds