Wall clock time and date at job start Fri Apr 10 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34942 * 119.71053 * 2 1 4 4 C 1.38316 * 119.02433 * 179.97438 * 3 2 1 5 5 C 1.47306 * 120.73899 * 179.97438 * 4 3 2 6 6 O 1.21621 * 120.00204 * 261.18292 * 5 4 3 7 7 N 1.34773 * 120.00042 * 81.18162 * 5 4 3 8 8 C 1.46923 * 120.63458 * 354.71477 * 7 5 4 9 9 C 1.53192 * 108.77795 * 233.63304 * 8 7 5 10 10 C 1.53034 * 109.31105 * 305.36171 * 9 8 7 11 11 C 1.53033 * 109.54058 * 61.36655 * 10 9 8 12 12 H 1.09005 * 109.49868 * 58.58562 * 11 10 9 13 13 N 1.46502 * 109.52963 * 178.66919 * 11 10 9 14 14 C 1.36935 * 120.00370 * 204.85672 * 13 11 10 15 15 H 1.08005 * 119.99662 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00265 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46927 * 59.99992 * 18 16 14 20 20 H 1.48500 * 109.47463 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47032 * 300.00725 * 18 16 14 22 22 C 1.46933 * 120.63006 * 174.73945 * 7 5 4 23 23 C 1.42097 * 118.52674 * 0.24798 * 4 3 2 24 24 O 1.35012 * 120.33585 * 179.74795 * 23 4 3 25 25 N 1.32223 * 119.33120 * 359.46149 * 23 4 3 26 26 C 1.33322 * 120.92747 * 0.55551 * 25 23 4 27 27 O 1.21911 * 119.19920 * 179.74082 * 26 25 23 28 28 H 1.09009 * 109.46782 * 90.00233 * 1 2 3 29 29 H 1.09000 * 109.47622 * 210.00226 * 1 2 3 30 30 H 1.08997 * 109.46736 * 330.00903 * 1 2 3 31 31 H 1.08002 * 120.48935 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.58780 * 113.84155 * 8 7 5 33 33 H 1.09011 * 109.69699 * 353.48939 * 8 7 5 34 34 H 1.09002 * 109.49433 * 185.41049 * 9 8 7 35 35 H 1.08997 * 109.52401 * 65.33009 * 9 8 7 36 36 H 1.09001 * 109.46221 * 301.34567 * 10 9 8 37 37 H 1.09003 * 109.45855 * 181.39006 * 10 9 8 38 38 H 0.97002 * 119.99787 * 24.84597 * 13 11 10 39 39 H 0.96992 * 120.00177 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.58450 * 6.57940 * 22 7 5 41 41 H 1.09004 * 109.58102 * 246.15483 * 22 7 5 42 42 H 0.96698 * 113.99801 * 185.01778 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1338 1.1720 0.0000 4 6 3.5169 1.1555 0.0005 5 6 4.2849 2.4125 0.0000 6 8 4.7401 2.8465 -1.0409 7 7 4.4831 3.0816 1.1530 8 6 3.8441 2.6337 2.3979 9 6 3.0732 3.8091 3.0070 10 6 4.0190 4.9997 3.1792 11 6 4.5544 5.4301 1.8117 12 1 3.7205 5.6943 1.1612 13 7 5.4348 6.5898 1.9733 14 6 5.6258 7.4553 0.9294 15 1 5.1277 7.2827 -0.0132 16 6 6.4597 8.5544 1.0827 17 7 7.0671 8.7645 2.2313 18 14 6.7208 9.7346 -0.3414 19 1 5.4179 10.3255 -0.7398 20 1 7.6486 10.8164 0.0758 21 1 7.3037 8.9998 -1.4928 22 6 5.3420 4.2732 1.1889 23 6 4.1805 -0.1010 -0.0043 24 8 5.5293 -0.1598 -0.0091 25 7 3.4637 -1.2121 0.0016 26 6 2.1312 -1.1679 0.0010 27 8 1.5016 -2.2118 0.0018 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.5971 2.1092 0.0004 32 1 4.6069 2.2945 3.0987 33 1 3.1552 1.8164 2.1838 34 1 2.6742 3.5179 3.9786 35 1 2.2530 4.0886 2.3458 36 1 4.8518 4.7122 3.8210 37 1 3.4790 5.8295 3.6353 38 1 5.8824 6.7447 2.8198 39 1 7.6501 9.5323 2.3383 40 1 5.6411 4.5386 0.1749 41 1 6.2270 4.0676 1.7912 42 1 5.8836 -1.0559 -0.0894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000909570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:29 Heat of formation + Delta-G solvation = -41.073185 kcal Electronic energy + Delta-G solvation = -27723.755117 eV Core-core repulsion = 23705.632024 eV Total energy + Delta-G solvation = -4018.123093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.27109 -40.02202 -38.99567 -37.41438 -37.03711 -35.05499 -34.54161 -32.54402 -31.72071 -31.16245 -28.42064 -27.99893 -25.80335 -25.08455 -24.11332 -23.62764 -21.98392 -20.77586 -20.19941 -19.37413 -18.64476 -17.76755 -17.13861 -17.07204 -16.62460 -16.08856 -15.64119 -15.11559 -14.91557 -14.78651 -14.54215 -14.25265 -14.15587 -13.79994 -13.73420 -13.55827 -13.42176 -13.12711 -12.79962 -12.50286 -12.35754 -12.01326 -11.45641 -11.32466 -11.11658 -10.87575 -10.74577 -10.65314 -10.53624 -10.44176 -10.27948 -9.90527 -9.89304 -9.68649 -9.12274 -8.93676 -8.44886 -7.05212 -5.82642 -3.12872 0.16873 1.05940 1.85704 2.49234 2.84717 3.02971 3.32184 3.43194 3.47621 3.49013 3.72302 3.97704 4.24128 4.49588 4.54007 4.72418 4.76230 4.78733 4.86956 4.98905 5.08457 5.14231 5.41230 5.45799 5.48461 5.53806 5.70970 5.79484 5.85399 5.92935 6.07382 6.12561 6.26118 6.40889 6.61696 6.70869 6.75080 6.92130 7.32723 7.49131 7.67192 7.71731 8.18959 8.35433 9.47261 10.00582 10.35462 11.39423 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.003053 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.641157 B = 9167.936248 C = 9451.176659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.519 5.519 3 C 0.235 3.765 4 C -0.282 4.282 5 C 0.580 3.420 6 O -0.521 6.521 7 N -0.594 5.594 8 C 0.108 3.892 9 C -0.129 4.129 10 C -0.127 4.127 11 C 0.169 3.831 12 H 0.051 0.949 13 N -0.718 5.718 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.092 3.908 23 C 0.488 3.512 24 O -0.432 6.432 25 N -0.611 5.611 26 C 0.654 3.346 27 O -0.530 6.530 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.191 0.809 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -16.936 0.964 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.233 5.233 3 C 0.095 3.905 4 C -0.295 4.295 5 C 0.364 3.636 6 O -0.396 6.396 7 N -0.327 5.327 8 C -0.015 4.015 9 C -0.168 4.168 10 C -0.165 4.165 11 C 0.058 3.942 12 H 0.069 0.931 13 N -0.358 5.358 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.032 4.032 23 C 0.286 3.714 24 O -0.226 6.226 25 N -0.369 5.369 26 C 0.356 3.644 27 O -0.405 6.405 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.208 0.792 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -12.648 -17.534 0.317 21.622 hybrid contribution 0.305 0.856 -0.475 1.026 sum -12.343 -16.678 -0.158 20.749 Atomic orbital electron populations 1.22319 0.75421 1.05780 1.04769 1.46158 1.10932 1.07026 1.59198 1.22628 0.91248 0.91370 0.85208 1.19573 0.92470 0.94394 1.23075 1.17302 0.80156 0.82145 0.84009 1.90849 1.50259 1.67364 1.31158 1.48247 1.48176 1.28858 1.07438 1.21705 0.96846 0.96735 0.86236 1.21886 0.98544 0.95573 1.00752 1.21833 0.98827 0.97055 0.98822 1.20487 0.92860 0.87116 0.93766 0.93056 1.42368 1.54139 1.24609 1.14680 1.19218 1.22959 1.02782 0.92679 0.91032 1.24748 0.99750 0.98938 0.97104 1.69646 1.34159 1.30621 1.23529 0.86268 0.77578 0.80608 0.81748 1.21195 1.21685 1.21052 1.22903 0.93012 0.83158 1.04119 1.20143 0.84589 0.88171 0.78506 1.85072 1.14655 1.37703 1.85170 1.69675 1.05683 1.27207 1.34340 1.17378 0.84646 0.83025 0.79400 1.90997 1.65865 1.30035 1.53579 0.89828 0.88007 0.88884 0.79247 0.91151 0.91173 0.90898 0.91627 0.91909 0.91278 0.78027 0.93361 0.88847 0.91713 0.72301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 10.35 59.85 0.62 0.89 16 2 N -0.52 -4.36 2.96 -128.87 -0.38 -4.75 16 3 C 0.23 1.80 9.26 -16.16 -0.15 1.65 16 4 C -0.28 -3.12 4.08 -104.70 -0.43 -3.54 16 5 C 0.58 8.36 6.75 -12.57 -0.08 8.28 16 6 O -0.52 -9.84 16.52 5.26 0.09 -9.75 16 7 N -0.59 -8.13 2.97 -174.07 -0.52 -8.65 16 8 C 0.11 1.08 6.31 -3.71 -0.02 1.06 16 9 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 10 C -0.13 -1.77 5.35 -26.70 -0.14 -1.91 16 11 C 0.17 3.07 2.92 -67.81 -0.20 2.87 16 12 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 13 N -0.72 -16.92 5.13 -53.31 -0.27 -17.19 16 14 C -0.25 -6.59 9.93 -15.06 -0.15 -6.74 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 C 0.09 1.61 6.02 -3.71 -0.02 1.58 16 23 C 0.49 5.57 7.93 -15.90 -0.13 5.44 16 24 O -0.43 -4.42 13.08 -16.75 -0.22 -4.64 16 25 N -0.61 -7.75 10.38 -16.46 -0.17 -7.92 16 26 C 0.65 8.31 8.32 -88.49 -0.74 7.57 16 27 O -0.53 -8.32 16.67 5.00 0.08 -8.24 16 28 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.10 0.58 7.36 -51.93 -0.38 0.19 16 30 H 0.09 0.13 8.02 -51.93 -0.42 -0.29 16 31 H 0.19 0.76 8.05 -52.49 -0.42 0.34 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.56 5.71 -51.92 -0.30 0.26 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.39 9.63 7.80 -40.82 -0.32 9.31 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.09 1.93 6.99 -51.93 -0.36 1.57 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.42 2.33 8.98 45.56 0.41 2.74 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -37.40 354.58 -6.76 -44.16 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.71 Total: 5.79 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -1.70 Total: 15.37 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.62 Total: -65.10 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.40 -6.76 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.088 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds