Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34946 * 119.70406 * 2 1 4 4 C 1.38325 * 119.02000 * 180.27310 * 3 2 1 5 5 C 1.47313 * 120.73817 * 179.75181 * 4 3 2 6 6 O 1.21618 * 120.00081 * 260.37682 * 5 4 3 7 7 N 1.34780 * 119.99785 * 80.37491 * 5 4 3 8 8 C 1.46928 * 120.63210 * 355.01011 * 7 5 4 9 9 C 1.53185 * 108.77262 * 126.36808 * 8 7 5 10 10 C 1.53044 * 109.31515 * 54.63993 * 9 8 7 11 11 C 1.53043 * 109.53098 * 298.63138 * 10 9 8 12 12 H 1.08995 * 109.49929 * 301.37430 * 11 10 9 13 13 N 1.46507 * 109.49284 * 181.31428 * 11 10 9 14 14 C 1.36943 * 119.99782 * 154.99932 * 13 11 10 15 15 H 1.07996 * 119.99793 * 0.02562 * 14 13 11 16 16 C 1.38806 * 119.99857 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99769 * 359.72487 * 16 14 13 18 18 Si 1.86797 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47186 * 60.00132 * 18 16 14 20 20 H 1.48507 * 109.47076 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47147 * 299.99560 * 18 16 14 22 22 C 1.46920 * 120.62604 * 174.99109 * 7 5 4 23 23 C 1.42092 * 118.52537 * 359.47708 * 4 3 2 24 24 O 1.35014 * 120.33242 * 180.27192 * 23 4 3 25 25 N 1.32217 * 119.33460 * 0.25523 * 23 4 3 26 26 C 1.33320 * 120.92944 * 359.97438 * 25 23 4 27 27 O 1.21908 * 119.20255 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.47162 * 180.28217 * 1 2 3 29 29 H 1.08997 * 109.47110 * 300.27593 * 1 2 3 30 30 H 1.08994 * 109.47456 * 60.28176 * 1 2 3 31 31 H 1.08001 * 120.49130 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.58483 * 6.57941 * 8 7 5 33 33 H 1.08997 * 109.58470 * 246.16213 * 8 7 5 34 34 H 1.08998 * 109.50064 * 294.68355 * 9 8 7 35 35 H 1.09005 * 109.52206 * 174.60018 * 9 8 7 36 36 H 1.08993 * 109.46383 * 178.61151 * 10 9 8 37 37 H 1.09001 * 109.44777 * 58.64070 * 10 9 8 38 38 H 0.97000 * 120.00083 * 334.99977 * 13 11 10 39 39 H 0.97008 * 119.99434 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58907 * 113.84445 * 22 7 5 41 41 H 1.08999 * 109.59274 * 353.41462 * 22 7 5 42 42 H 0.96700 * 113.99910 * 185.02093 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1336 1.1721 0.0000 4 6 3.5168 1.1556 -0.0058 5 6 4.2848 2.4127 -0.0115 6 8 4.7477 2.8378 -1.0527 7 7 4.4743 3.0918 1.1372 8 6 3.8312 2.6508 2.3825 9 6 4.9056 2.4910 3.4626 10 6 5.6931 3.7971 3.5903 11 6 6.3861 4.1088 2.2618 12 1 7.0501 3.2862 1.9962 13 7 7.1650 5.3426 2.3944 14 6 8.2415 5.5638 1.5774 15 1 8.5161 4.8289 0.8352 16 6 8.9797 6.7325 1.7033 17 7 8.6417 7.6305 2.6043 18 14 10.4478 7.0346 0.5884 19 1 10.0004 7.0436 -0.8275 20 1 11.0617 8.3448 0.9225 21 1 11.4486 5.9552 0.7845 22 6 5.3284 4.2868 1.1680 23 6 4.1804 -0.1008 -0.0001 24 8 5.5293 -0.1594 0.0001 25 7 3.4637 -1.2119 0.0053 26 6 2.1313 -1.1678 0.0061 27 8 1.5017 -2.2117 0.0116 28 1 -0.3634 -1.0277 0.0051 29 1 -0.3633 0.5181 0.8875 30 1 -0.3634 0.5094 -0.8924 31 1 1.5968 2.1093 0.0004 32 1 3.3334 1.6950 2.2180 33 1 3.1013 3.3953 2.7003 34 1 5.5831 1.6834 3.1852 35 1 4.4318 2.2573 4.4160 36 1 6.4421 3.6943 4.3753 37 1 5.0110 4.6089 3.8432 38 1 6.9181 6.0027 3.0608 39 1 9.1575 8.4474 2.6920 40 1 4.7207 5.1648 1.3869 41 1 5.8187 4.4107 0.2024 42 1 5.8840 -1.0560 -0.0731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000909571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = -40.513869 kcal Electronic energy + Delta-G solvation = -27795.076880 eV Core-core repulsion = 23776.978041 eV Total energy + Delta-G solvation = -4018.098839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.26686 -40.02173 -38.95982 -37.41504 -37.02773 -35.04492 -34.52765 -32.53316 -31.69306 -31.14811 -28.41437 -27.99548 -25.79153 -25.07318 -24.10278 -23.60323 -21.96028 -20.76839 -20.17881 -19.35700 -18.64081 -17.76532 -17.11703 -17.07351 -16.60500 -16.10005 -15.62213 -15.16626 -14.87662 -14.76235 -14.41554 -14.24369 -14.17929 -13.91741 -13.76548 -13.46238 -13.43042 -13.13850 -12.70525 -12.50907 -12.35763 -11.98120 -11.41911 -11.28589 -11.09276 -10.85590 -10.71811 -10.64206 -10.53307 -10.42955 -10.25970 -9.89258 -9.87996 -9.66949 -9.11614 -8.93132 -8.44996 -7.03623 -5.81291 -3.11308 0.16924 1.06878 1.86307 2.48022 2.86108 3.04923 3.32883 3.44761 3.48638 3.50485 3.71584 3.97875 4.25205 4.54547 4.56091 4.66746 4.77100 4.81320 4.87336 5.02452 5.09627 5.17283 5.42941 5.43967 5.48804 5.55866 5.74322 5.80104 5.86560 5.96878 6.10787 6.15450 6.28964 6.42086 6.63081 6.74449 6.77831 6.94744 7.33689 7.48823 7.69313 7.72725 8.18511 8.36953 9.48814 10.02074 10.37220 11.40791 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.003100 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.199106 B = 9028.823590 C = 9399.758235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.520 5.520 3 C 0.233 3.767 4 C -0.280 4.280 5 C 0.580 3.420 6 O -0.521 6.521 7 N -0.594 5.594 8 C 0.108 3.892 9 C -0.130 4.130 10 C -0.126 4.126 11 C 0.168 3.832 12 H 0.053 0.947 13 N -0.717 5.717 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.093 3.907 23 C 0.488 3.512 24 O -0.430 6.430 25 N -0.611 5.611 26 C 0.654 3.346 27 O -0.532 6.532 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.190 0.810 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.863 -13.261 -0.358 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.234 5.234 3 C 0.094 3.906 4 C -0.293 4.293 5 C 0.364 3.636 6 O -0.397 6.397 7 N -0.327 5.327 8 C -0.015 4.015 9 C -0.169 4.169 10 C -0.164 4.164 11 C 0.057 3.943 12 H 0.071 0.929 13 N -0.358 5.358 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.031 4.031 23 C 0.287 3.713 24 O -0.223 6.223 25 N -0.369 5.369 26 C 0.356 3.644 27 O -0.406 6.406 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.207 0.793 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -17.628 -13.969 -0.972 22.513 hybrid contribution 0.592 0.651 -0.374 0.955 sum -17.037 -13.319 -1.346 21.667 Atomic orbital electron populations 1.22350 0.75577 1.07075 1.03878 1.46109 1.10899 1.07029 1.59376 1.22553 0.91175 0.91394 0.85479 1.19587 0.92457 0.94441 1.22842 1.17312 0.80171 0.82106 0.84030 1.90845 1.49869 1.67879 1.31084 1.48268 1.48091 1.28843 1.07538 1.21721 0.95517 0.99581 0.84682 1.21872 0.97855 0.99228 0.97920 1.21827 0.99289 0.96089 0.99204 1.20498 0.91222 0.91110 0.91495 0.92936 1.42370 1.31997 1.18712 1.42700 1.19229 1.03955 1.02222 1.12129 0.91032 1.24743 0.99724 0.96912 0.99189 1.69655 1.41807 1.10008 1.36562 0.86266 0.82560 0.77035 0.80344 1.21065 1.21694 1.21179 1.22889 0.92237 0.84256 1.03704 1.20160 0.84687 0.88146 0.78339 1.85098 1.14521 1.37671 1.85024 1.69683 1.05629 1.27202 1.34355 1.17392 0.84687 0.83075 0.79239 1.90984 1.65794 1.30037 1.53805 0.87222 0.89505 0.89599 0.79334 0.91169 0.91040 0.91468 0.91028 0.91312 0.91981 0.78050 0.93395 0.91724 0.88922 0.72249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.24 10.57 59.84 0.63 0.87 16 2 N -0.52 -4.31 2.96 -128.88 -0.38 -4.69 16 3 C 0.23 1.72 9.59 -16.15 -0.15 1.57 16 4 C -0.28 -3.10 3.92 -104.70 -0.41 -3.51 16 5 C 0.58 8.34 6.75 -12.57 -0.08 8.25 16 6 O -0.52 -9.81 16.54 5.26 0.09 -9.72 16 7 N -0.59 -8.11 2.97 -174.08 -0.52 -8.62 16 8 C 0.11 1.08 6.30 -3.71 -0.02 1.06 16 9 C -0.13 -1.43 6.08 -26.61 -0.16 -1.59 16 10 C -0.13 -1.83 5.35 -26.69 -0.14 -1.97 16 11 C 0.17 3.14 2.92 -67.80 -0.20 2.95 16 12 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 13 N -0.72 -17.13 5.12 -53.30 -0.27 -17.40 16 14 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.09 1.62 6.00 -3.71 -0.02 1.60 16 23 C 0.49 5.72 7.93 -15.91 -0.13 5.59 16 24 O -0.43 -4.68 13.08 -16.75 -0.22 -4.90 16 25 N -0.61 -7.87 10.38 -16.47 -0.17 -8.04 16 26 C 0.65 8.34 8.32 -88.50 -0.74 7.60 16 27 O -0.53 -8.34 16.42 5.00 0.08 -8.25 16 28 H 0.11 0.67 6.82 -51.93 -0.35 0.31 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.07 0.58 5.89 -51.93 -0.31 0.27 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 9.69 7.80 -40.82 -0.32 9.37 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.92 7.03 -51.93 -0.37 1.56 16 42 H 0.42 2.64 8.98 45.56 0.41 3.05 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -37.59 354.51 -6.73 -44.32 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.70 Total: 6.19 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: -1.67 Total: 15.26 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -0.62 Total: -65.49 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.59 -6.73 -44.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.806 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds