Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34946 * 119.70406 * 2 1 4 4 C 1.38325 * 119.02000 * 180.27310 * 3 2 1 5 5 C 1.47313 * 120.73817 * 179.75181 * 4 3 2 6 6 O 1.21618 * 120.00081 * 260.37682 * 5 4 3 7 7 N 1.34780 * 119.99785 * 80.37491 * 5 4 3 8 8 C 1.46928 * 120.63210 * 355.01011 * 7 5 4 9 9 C 1.53185 * 108.77262 * 126.36808 * 8 7 5 10 10 C 1.53044 * 109.31515 * 54.63993 * 9 8 7 11 11 C 1.53043 * 109.53098 * 298.63138 * 10 9 8 12 12 H 1.08995 * 109.49929 * 301.37430 * 11 10 9 13 13 N 1.46507 * 109.49284 * 181.31428 * 11 10 9 14 14 C 1.36943 * 119.99782 * 154.99932 * 13 11 10 15 15 H 1.07996 * 119.99793 * 0.02562 * 14 13 11 16 16 C 1.38806 * 119.99857 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99769 * 359.72487 * 16 14 13 18 18 Si 1.86797 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47186 * 60.00132 * 18 16 14 20 20 H 1.48507 * 109.47076 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47147 * 299.99560 * 18 16 14 22 22 C 1.46920 * 120.62604 * 174.99109 * 7 5 4 23 23 C 1.42092 * 118.52537 * 359.47708 * 4 3 2 24 24 O 1.35014 * 120.33242 * 180.27192 * 23 4 3 25 25 N 1.32217 * 119.33460 * 0.25523 * 23 4 3 26 26 C 1.33320 * 120.92944 * 359.97438 * 25 23 4 27 27 O 1.21908 * 119.20255 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.47162 * 180.28217 * 1 2 3 29 29 H 1.08997 * 109.47110 * 300.27593 * 1 2 3 30 30 H 1.08994 * 109.47456 * 60.28176 * 1 2 3 31 31 H 1.08001 * 120.49130 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.58483 * 6.57941 * 8 7 5 33 33 H 1.08997 * 109.58470 * 246.16213 * 8 7 5 34 34 H 1.08998 * 109.50064 * 294.68355 * 9 8 7 35 35 H 1.09005 * 109.52206 * 174.60018 * 9 8 7 36 36 H 1.08993 * 109.46383 * 178.61151 * 10 9 8 37 37 H 1.09001 * 109.44777 * 58.64070 * 10 9 8 38 38 H 0.97000 * 120.00083 * 334.99977 * 13 11 10 39 39 H 0.97008 * 119.99434 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58907 * 113.84445 * 22 7 5 41 41 H 1.08999 * 109.59274 * 353.41462 * 22 7 5 42 42 H 0.96700 * 113.99910 * 185.02093 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1336 1.1721 0.0000 4 6 3.5168 1.1556 -0.0058 5 6 4.2848 2.4127 -0.0115 6 8 4.7477 2.8378 -1.0527 7 7 4.4743 3.0918 1.1372 8 6 3.8312 2.6508 2.3825 9 6 4.9056 2.4910 3.4626 10 6 5.6931 3.7971 3.5903 11 6 6.3861 4.1088 2.2618 12 1 7.0501 3.2862 1.9962 13 7 7.1650 5.3426 2.3944 14 6 8.2415 5.5638 1.5774 15 1 8.5161 4.8289 0.8352 16 6 8.9797 6.7325 1.7033 17 7 8.6417 7.6305 2.6043 18 14 10.4478 7.0346 0.5884 19 1 10.0004 7.0436 -0.8275 20 1 11.0617 8.3448 0.9225 21 1 11.4486 5.9552 0.7845 22 6 5.3284 4.2868 1.1680 23 6 4.1804 -0.1008 -0.0001 24 8 5.5293 -0.1594 0.0001 25 7 3.4637 -1.2119 0.0053 26 6 2.1313 -1.1678 0.0061 27 8 1.5017 -2.2117 0.0116 28 1 -0.3634 -1.0277 0.0051 29 1 -0.3633 0.5181 0.8875 30 1 -0.3634 0.5094 -0.8924 31 1 1.5968 2.1093 0.0004 32 1 3.3334 1.6950 2.2180 33 1 3.1013 3.3953 2.7003 34 1 5.5831 1.6834 3.1852 35 1 4.4318 2.2573 4.4160 36 1 6.4421 3.6943 4.3753 37 1 5.0110 4.6089 3.8432 38 1 6.9181 6.0027 3.0608 39 1 9.1575 8.4474 2.6920 40 1 4.7207 5.1648 1.3869 41 1 5.8187 4.4107 0.2024 42 1 5.8840 -1.0560 -0.0731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000909571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = -73.787295 kcal Electronic energy + Delta-G solvation = -27796.519724 eV Core-core repulsion = 23776.978041 eV Total energy + Delta-G solvation = -4019.541683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.09224 -41.13598 -39.84702 -38.65142 -37.99649 -36.19342 -35.81786 -34.00579 -32.73759 -32.57895 -29.92077 -28.63269 -26.81854 -25.94447 -25.84463 -24.59050 -23.24981 -22.00001 -21.01818 -20.53579 -19.43031 -19.12318 -18.71282 -17.89110 -17.49511 -17.18042 -16.71537 -16.48921 -16.02825 -15.62887 -15.57362 -15.46921 -15.40600 -15.08392 -14.91893 -14.70030 -14.46563 -14.00134 -13.82444 -13.67252 -13.48642 -13.10883 -12.87108 -12.61393 -12.47887 -12.24858 -12.23721 -11.98418 -11.88443 -11.67573 -11.42438 -11.33577 -11.31104 -11.08391 -10.87829 -9.80405 -9.72702 -8.98924 -7.96408 -5.24970 -0.53458 0.18707 1.13207 1.43988 1.47192 1.49244 1.54980 1.97557 2.08854 2.45609 2.55714 2.98985 3.27221 3.37233 3.49836 3.76713 3.96896 4.03631 4.09027 4.09681 4.20435 4.26526 4.35966 4.43584 4.47231 4.61624 4.76337 4.81926 4.89187 4.90343 4.93536 5.05561 5.09225 5.16584 5.41428 5.47098 5.47985 5.58987 6.05562 6.26580 6.39244 6.49302 6.86898 7.07230 7.33677 8.06318 8.31244 9.25944 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.003100 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.199106 B = 9028.823590 C = 9399.758235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.508 5.508 3 C 0.275 3.725 4 C -0.307 4.307 5 C 0.587 3.413 6 O -0.575 6.575 7 N -0.590 5.590 8 C 0.105 3.895 9 C -0.123 4.123 10 C -0.117 4.117 11 C 0.166 3.834 12 H 0.028 0.972 13 N -0.728 5.728 14 C -0.244 4.244 15 H 0.065 0.935 16 C -0.066 4.066 17 N -0.963 5.963 18 Si 0.965 3.035 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.110 3.890 23 C 0.488 3.512 24 O -0.444 6.444 25 N -0.637 5.637 26 C 0.647 3.353 27 O -0.572 6.572 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.242 0.758 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.378 0.622 39 H 0.253 0.747 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.620 -13.539 0.314 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.219 5.219 3 C 0.134 3.866 4 C -0.320 4.320 5 C 0.373 3.627 6 O -0.454 6.454 7 N -0.322 5.322 8 C -0.016 4.016 9 C -0.162 4.162 10 C -0.155 4.155 11 C 0.056 3.944 12 H 0.047 0.953 13 N -0.369 5.369 14 C -0.376 4.376 15 H 0.083 0.917 16 C -0.259 4.259 17 N -0.613 5.613 18 Si 0.794 3.206 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.016 4.016 23 C 0.288 3.712 24 O -0.240 6.240 25 N -0.396 5.396 26 C 0.349 3.651 27 O -0.450 6.450 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.258 0.742 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.211 0.789 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -20.426 -14.302 -0.281 24.937 hybrid contribution 1.366 0.668 -0.579 1.628 sum -19.060 -13.634 -0.860 23.450 Atomic orbital electron populations 1.22747 0.72660 1.06912 1.07163 1.46148 1.12544 1.06074 1.57139 1.23197 0.89878 0.92476 0.81042 1.19268 0.93803 0.92188 1.26717 1.17637 0.79472 0.82474 0.83145 1.90822 1.52110 1.69374 1.33100 1.48230 1.47323 1.27539 1.09078 1.22062 0.95421 1.01862 0.82252 1.21861 0.97707 0.96412 1.00220 1.21725 0.99310 0.98632 0.95843 1.20665 0.91036 0.88172 0.94541 0.95338 1.42491 1.32125 1.20172 1.42069 1.19475 1.04578 1.01794 1.11774 0.91681 1.25432 1.02448 0.97085 1.00914 1.69778 1.42982 1.10337 1.38223 0.85348 0.79815 0.76777 0.78665 1.20869 1.21711 1.20587 1.22275 0.92380 0.86274 1.00653 1.20208 0.84680 0.88186 0.78086 1.85080 1.14725 1.39251 1.84963 1.69576 1.06338 1.28008 1.35693 1.17467 0.84676 0.83814 0.79141 1.90957 1.66487 1.31742 1.55825 0.89158 0.85771 0.86737 0.74205 0.88526 0.87894 0.92621 0.87411 0.92420 0.90816 0.78914 0.93860 0.91144 0.93054 0.70533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.20 10.57 127.77 1.35 1.55 16 2 N -0.51 -6.53 2.96 -679.97 -2.01 -8.54 16 3 C 0.27 2.81 9.59 84.24 0.81 3.62 16 4 C -0.31 -6.06 3.92 -19.91 -0.08 -6.13 16 5 C 0.59 16.14 6.75 86.63 0.58 16.73 16 6 O -0.58 -21.92 16.54 -4.09 -0.07 -21.99 16 7 N -0.59 -15.03 2.97 -822.91 -2.45 -17.48 16 8 C 0.11 1.66 6.30 86.36 0.54 2.21 16 9 C -0.12 -2.32 6.08 30.67 0.19 -2.13 16 10 C -0.12 -3.22 5.35 30.62 0.16 -3.05 16 11 C 0.17 6.26 2.92 45.07 0.13 6.39 16 12 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 13 N -0.73 -35.60 5.12 -322.55 -1.65 -37.26 16 14 C -0.24 -13.63 9.93 84.03 0.83 -12.79 16 15 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 16 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 17 N -0.96 -57.74 13.06 21.65 0.28 -57.46 16 18 Si 0.96 46.59 29.55 68.60 2.03 48.61 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 C 0.11 3.81 6.00 86.37 0.52 4.33 16 23 C 0.49 10.96 7.93 85.59 0.68 11.64 16 24 O -0.44 -9.75 13.08 -82.85 -1.08 -10.83 16 25 N -0.64 -15.91 10.38 -438.20 -4.55 -20.46 16 26 C 0.65 15.47 8.32 179.61 1.49 16.97 16 27 O -0.57 -17.64 16.42 -5.02 -0.08 -17.72 16 28 H 0.09 0.87 6.82 -2.38 -0.02 0.85 16 29 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.24 -0.04 8.06 -2.91 -0.02 -0.06 16 32 H 0.10 1.10 5.89 -2.38 -0.01 1.09 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.38 19.38 7.80 -92.71 -0.72 18.66 16 39 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 2.22 7.03 -2.39 -0.02 2.20 16 42 H 0.43 5.69 8.98 -74.06 -0.67 5.02 16 Total: -1.00 -87.63 354.51 -2.21 -89.84 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.31 Total: 17.27 kcal Atomic # 6 Polarization: 28.33 SS G_CDS: 7.68 Total: 36.01 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -10.38 Total: -141.20 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -1.23 Total: -50.54 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -87.63 -2.21 -89.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.055 kcal (2) G-P(sol) polarization free energy of solvation -87.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds