Wall clock time and date at job start Fri Apr 10 2020 18:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34840 * 119.87148 * 2 1 4 4 O 1.21786 * 120.30217 * 359.97438 * 3 2 1 5 5 C 1.41569 * 119.38972 * 179.97438 * 3 2 1 6 6 C 1.35018 * 119.11424 * 359.97438 * 5 3 2 7 7 N 1.36835 * 119.68617 * 0.02562 * 6 5 3 8 8 C 1.46504 * 119.69298 * 179.72271 * 7 6 5 9 9 C 1.50702 * 109.46993 * 89.99756 * 8 7 6 10 10 O 1.21280 * 120.00312 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99783 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99926 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64200 * 325.70923 * 12 11 9 14 14 C 1.55154 * 110.72089 * 202.56139 * 12 11 9 15 15 C 1.55393 * 101.36859 * 277.04761 * 14 12 11 16 16 N 1.47424 * 104.86963 * 323.01789 * 15 14 12 17 17 C 1.36940 * 125.64544 * 204.09784 * 16 15 14 18 18 H 1.08003 * 119.99972 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00115 * 0.04207 * 17 16 15 20 20 N 1.31613 * 119.99793 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47612 * 89.99814 * 21 19 17 23 23 H 1.48507 * 109.47011 * 209.99888 * 21 19 17 24 24 H 1.48503 * 109.47424 * 329.99198 * 21 19 17 25 25 C 1.47021 * 108.70581 * 24.12977 * 16 15 14 26 26 C 1.34546 * 120.61869 * 359.97438 * 7 6 5 27 27 O 1.21586 * 119.53577 * 180.02562 * 26 7 6 28 28 H 1.08998 * 109.47342 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46961 * 120.00301 * 1 2 3 30 30 H 1.09001 * 109.47536 * 240.00099 * 1 2 3 31 31 H 1.08001 * 120.44485 * 179.97438 * 5 3 2 32 32 H 1.08004 * 120.16082 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47368 * 209.99636 * 8 7 6 34 34 H 1.08993 * 109.46912 * 330.00152 * 8 7 6 35 35 H 0.97002 * 120.00228 * 0.02562 * 11 9 8 36 36 H 1.09000 * 111.00395 * 35.21340 * 14 12 11 37 37 H 1.09000 * 111.00707 * 159.06495 * 14 12 11 38 38 H 1.09001 * 110.34108 * 204.16873 * 15 14 12 39 39 H 1.08993 * 110.34783 * 81.86863 * 15 14 12 40 40 H 0.97005 * 120.00317 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.88463 * 239.52340 * 25 16 15 42 42 H 1.09004 * 109.88014 * 118.36108 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5308 2.2258 -0.0005 5 6 3.5521 1.1574 0.0006 6 6 4.1991 -0.0277 0.0016 7 7 3.4805 -1.1922 0.0016 8 6 4.1824 -2.4781 -0.0035 9 6 4.4278 -2.9220 1.4156 10 8 4.0530 -2.2323 2.3402 11 7 5.0630 -4.0858 1.6573 12 6 5.3021 -4.5170 3.0369 13 1 5.4902 -3.6580 3.6809 14 6 6.4836 -5.5207 3.1014 15 6 5.7732 -6.8539 2.7372 16 7 4.4478 -6.7632 3.3764 17 6 3.6605 -7.8247 3.7350 18 1 2.7007 -7.6526 4.1994 19 6 4.0960 -9.1220 3.5018 20 7 5.2655 -9.3317 2.9357 21 14 3.0216 -10.5698 3.9903 22 1 2.1313 -10.9300 2.8577 23 1 3.8817 -11.7311 4.3326 24 1 2.1979 -10.1996 5.1692 25 6 4.1111 -5.3445 3.5644 26 6 2.1353 -1.1672 0.0010 27 8 1.5164 -2.2138 0.0015 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 4.1072 2.0838 0.0001 32 1 5.2788 -0.0565 0.0016 33 1 3.5735 -3.2224 -0.5167 34 1 5.1359 -2.3695 -0.5202 35 1 5.3625 -4.6376 0.9179 36 1 7.2499 -5.2696 2.3680 37 1 6.9052 -5.5639 4.1056 38 1 6.3300 -7.7014 3.1369 39 1 5.6676 -6.9440 1.6561 40 1 5.5698 -10.2382 2.7724 41 1 3.9559 -5.1375 4.6233 42 1 3.2108 -5.0994 3.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014637961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:58 Heat of formation + Delta-G solvation = -25.172944 kcal Electronic energy + Delta-G solvation = -27425.468169 eV Core-core repulsion = 23408.034562 eV Total energy + Delta-G solvation = -4017.433607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.57208 -40.02043 -39.01754 -37.67423 -37.00938 -35.38646 -33.99365 -32.45615 -31.79360 -29.43527 -28.69702 -27.95807 -26.88594 -24.56361 -24.09744 -23.67789 -21.22867 -20.29089 -19.95198 -19.49627 -18.15230 -17.89660 -17.27372 -16.96977 -16.66884 -16.15392 -15.62046 -15.33680 -15.17980 -14.71688 -14.53527 -14.03793 -13.93858 -13.92393 -13.69713 -13.46064 -13.22209 -12.83390 -12.51101 -12.33162 -12.08708 -12.04354 -11.69905 -11.13280 -11.09823 -10.93128 -10.86310 -10.52334 -10.48563 -10.15810 -10.02635 -9.97240 -9.92040 -9.63926 -8.91623 -8.84616 -8.68744 -6.89721 -5.71482 -3.12305 0.72302 1.54084 1.80281 2.50094 2.70432 3.09172 3.36803 3.38136 3.43286 3.44952 4.04729 4.25169 4.44965 4.52992 4.61114 4.82636 4.92357 5.14536 5.15682 5.20445 5.24416 5.36849 5.37291 5.42947 5.50572 5.65478 5.74749 5.75618 6.09734 6.14098 6.24506 6.38039 6.41730 6.66082 6.90903 6.94758 7.28040 7.34234 7.52012 7.58774 7.68385 7.76279 8.17188 8.29357 9.17007 9.77291 10.40816 11.32949 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.002829 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.954132 B = 9896.765647 C =10692.479237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.556 5.556 3 C 0.549 3.451 4 O -0.523 6.523 5 C -0.301 4.301 6 C 0.187 3.813 7 N -0.517 5.517 8 C 0.089 3.911 9 C 0.497 3.503 10 O -0.534 6.534 11 N -0.702 5.702 12 C 0.131 3.869 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.697 3.303 27 O -0.528 6.528 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.403 0.597 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.011 0.989 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 17.849 -9.864 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.300 5.300 3 C 0.346 3.654 4 O -0.400 6.400 5 C -0.328 4.328 6 C 0.064 3.936 7 N -0.236 5.236 8 C -0.036 4.036 9 C 0.280 3.720 10 O -0.411 6.411 11 N -0.353 5.353 12 C 0.027 3.973 13 H 0.107 0.893 14 C -0.192 4.192 15 C 0.026 3.974 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.746 3.254 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.000 4.000 26 C 0.400 3.600 27 O -0.400 6.400 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.189 0.811 32 H 0.195 0.805 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.888 17.974 -9.175 20.268 hybrid contribution -0.370 -1.074 -0.094 1.140 sum 1.518 16.900 -9.269 19.335 Atomic orbital electron populations 1.21907 0.75315 1.05046 1.03945 1.46299 1.10457 1.06256 1.66966 1.17392 0.89024 0.82911 0.76040 1.90860 1.70772 1.29329 1.49010 1.21848 0.92971 0.99028 1.18945 1.22328 0.98911 0.84178 0.88231 1.44289 1.05098 1.07539 1.66680 1.21792 0.99859 0.84956 0.97036 1.20596 0.78480 0.82002 0.90882 1.90748 1.50232 1.54739 1.45356 1.45906 1.58321 1.21209 1.09888 1.22046 0.96975 0.96944 0.81345 0.89299 1.23432 0.95800 0.98023 1.01955 1.22046 0.86168 0.94147 0.95000 1.44502 1.18146 0.99309 1.70990 1.19099 0.98807 0.84212 1.32749 0.90508 1.24762 0.97483 0.97278 1.01132 1.69762 1.19345 1.19493 1.48755 0.86056 0.79170 0.82061 0.78136 1.21624 1.21629 1.20674 1.21686 0.94844 0.85820 0.97666 1.15782 0.81327 0.84401 0.78467 1.91066 1.65662 1.30074 1.53150 0.88038 0.90358 0.90254 0.81100 0.80507 0.84851 0.85360 0.76233 0.91608 0.90495 0.87341 0.97108 0.93735 0.95078 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.00 59.84 0.60 1.43 16 2 N -0.56 -6.92 2.96 -131.49 -0.39 -7.31 16 3 C 0.55 6.74 7.45 -14.96 -0.11 6.63 16 4 O -0.52 -7.73 16.44 5.11 0.08 -7.64 16 5 C -0.30 -2.60 10.00 -39.46 -0.39 -2.99 16 6 C 0.19 1.33 10.38 -16.46 -0.17 1.16 16 7 N -0.52 -5.21 2.10 -122.82 -0.26 -5.47 16 8 C 0.09 0.77 5.82 -5.19 -0.03 0.73 16 9 C 0.50 6.54 7.90 -10.99 -0.09 6.45 16 10 O -0.53 -9.22 16.12 5.56 0.09 -9.13 16 11 N -0.70 -9.43 5.10 -52.03 -0.27 -9.70 16 12 C 0.13 2.18 3.28 -66.10 -0.22 1.96 16 13 H 0.09 1.45 7.62 -51.93 -0.40 1.06 16 14 C -0.15 -2.53 6.69 -24.32 -0.16 -2.69 16 15 C 0.15 3.36 5.87 -2.27 -0.01 3.34 16 16 N -0.60 -15.00 3.40 -169.76 -0.58 -15.58 16 17 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.05 10.09 55.49 0.56 -25.49 16 21 Si 0.92 21.93 29.55 -169.99 -5.02 16.90 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.13 2.70 6.98 -3.07 -0.02 2.68 16 26 C 0.70 9.28 8.12 -87.28 -0.71 8.57 16 27 O -0.53 -8.60 15.79 5.29 0.08 -8.51 16 28 H 0.10 1.00 6.90 -51.93 -0.36 0.64 16 29 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 33 H 0.13 1.19 7.37 -51.93 -0.38 0.81 16 34 H 0.13 0.43 8.03 -51.93 -0.42 0.01 16 35 H 0.40 4.57 8.63 -40.82 -0.35 4.22 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.11 2.77 5.87 -51.93 -0.31 2.47 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -37.40 354.69 -7.48 -44.87 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.56 Total: 1.11 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: -1.57 Total: 20.61 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.93 Total: -63.55 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.26 Total: -25.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.40 -7.48 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014637961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.699 kcal (2) G-P(sol) polarization free energy of solvation -37.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds