Wall clock time and date at job start Fri Apr 10 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34840 * 119.87148 * 2 1 4 4 O 1.21786 * 120.30217 * 359.97438 * 3 2 1 5 5 C 1.41569 * 119.38972 * 179.97438 * 3 2 1 6 6 C 1.35018 * 119.11424 * 359.97438 * 5 3 2 7 7 N 1.36835 * 119.68617 * 0.02562 * 6 5 3 8 8 C 1.46504 * 119.69298 * 179.72271 * 7 6 5 9 9 C 1.50702 * 109.46993 * 89.99756 * 8 7 6 10 10 O 1.21280 * 120.00312 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99783 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99926 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64200 * 325.70923 * 12 11 9 14 14 C 1.55154 * 110.72089 * 202.56139 * 12 11 9 15 15 C 1.55393 * 101.36859 * 277.04761 * 14 12 11 16 16 N 1.47424 * 104.86963 * 323.01789 * 15 14 12 17 17 C 1.36940 * 125.64544 * 204.09784 * 16 15 14 18 18 H 1.08003 * 119.99972 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00115 * 0.04207 * 17 16 15 20 20 N 1.31613 * 119.99793 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47612 * 89.99814 * 21 19 17 23 23 H 1.48507 * 109.47011 * 209.99888 * 21 19 17 24 24 H 1.48503 * 109.47424 * 329.99198 * 21 19 17 25 25 C 1.47021 * 108.70581 * 24.12977 * 16 15 14 26 26 C 1.34546 * 120.61869 * 359.97438 * 7 6 5 27 27 O 1.21586 * 119.53577 * 180.02562 * 26 7 6 28 28 H 1.08998 * 109.47342 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46961 * 120.00301 * 1 2 3 30 30 H 1.09001 * 109.47536 * 240.00099 * 1 2 3 31 31 H 1.08001 * 120.44485 * 179.97438 * 5 3 2 32 32 H 1.08004 * 120.16082 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47368 * 209.99636 * 8 7 6 34 34 H 1.08993 * 109.46912 * 330.00152 * 8 7 6 35 35 H 0.97002 * 120.00228 * 0.02562 * 11 9 8 36 36 H 1.09000 * 111.00395 * 35.21340 * 14 12 11 37 37 H 1.09000 * 111.00707 * 159.06495 * 14 12 11 38 38 H 1.09001 * 110.34108 * 204.16873 * 15 14 12 39 39 H 1.08993 * 110.34783 * 81.86863 * 15 14 12 40 40 H 0.97005 * 120.00317 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.88463 * 239.52340 * 25 16 15 42 42 H 1.09004 * 109.88014 * 118.36108 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5308 2.2258 -0.0005 5 6 3.5521 1.1574 0.0006 6 6 4.1991 -0.0277 0.0016 7 7 3.4805 -1.1922 0.0016 8 6 4.1824 -2.4781 -0.0035 9 6 4.4278 -2.9220 1.4156 10 8 4.0530 -2.2323 2.3402 11 7 5.0630 -4.0858 1.6573 12 6 5.3021 -4.5170 3.0369 13 1 5.4902 -3.6580 3.6809 14 6 6.4836 -5.5207 3.1014 15 6 5.7732 -6.8539 2.7372 16 7 4.4478 -6.7632 3.3764 17 6 3.6605 -7.8247 3.7350 18 1 2.7007 -7.6526 4.1994 19 6 4.0960 -9.1220 3.5018 20 7 5.2655 -9.3317 2.9357 21 14 3.0216 -10.5698 3.9903 22 1 2.1313 -10.9300 2.8577 23 1 3.8817 -11.7311 4.3326 24 1 2.1979 -10.1996 5.1692 25 6 4.1111 -5.3445 3.5644 26 6 2.1353 -1.1672 0.0010 27 8 1.5164 -2.2138 0.0015 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 4.1072 2.0838 0.0001 32 1 5.2788 -0.0565 0.0016 33 1 3.5735 -3.2224 -0.5167 34 1 5.1359 -2.3695 -0.5202 35 1 5.3625 -4.6376 0.9179 36 1 7.2499 -5.2696 2.3680 37 1 6.9052 -5.5639 4.1056 38 1 6.3300 -7.7014 3.1369 39 1 5.6676 -6.9440 1.6561 40 1 5.5698 -10.2382 2.7724 41 1 3.9559 -5.1375 4.6233 42 1 3.2108 -5.0994 3.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014637961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:57 Heat of formation + Delta-G solvation = -52.879957 kcal Electronic energy + Delta-G solvation = -27426.669635 eV Core-core repulsion = 23408.034562 eV Total energy + Delta-G solvation = -4018.635073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.45142 -41.10919 -40.06969 -38.97144 -38.10683 -36.37337 -35.52233 -33.76948 -32.98728 -31.07455 -29.74448 -29.06794 -28.18932 -26.41900 -24.87867 -24.63584 -22.38929 -22.03002 -21.31218 -20.32937 -19.19673 -18.84394 -18.70008 -18.15815 -17.73389 -17.29325 -16.80779 -16.58247 -16.20906 -16.16241 -15.71163 -15.53251 -15.07925 -14.84519 -14.72417 -14.57276 -14.29627 -14.24247 -13.82184 -13.40870 -13.34842 -13.18518 -12.97455 -12.94230 -12.82004 -12.33741 -12.14933 -12.09465 -12.02541 -11.84153 -11.44885 -11.44116 -11.09145 -10.94115 -10.76458 -10.12702 -9.62631 -8.90033 -7.80084 -5.23196 0.04218 0.69302 0.88077 1.45648 1.46122 1.50183 1.55172 1.86261 2.16682 2.46674 2.48791 3.29661 3.47635 3.56411 3.68166 3.75630 3.84944 3.96702 4.06917 4.15552 4.24539 4.29524 4.31623 4.31839 4.56892 4.60046 4.64922 4.69024 4.75253 4.90166 4.98327 5.08436 5.12528 5.37087 5.42552 5.54619 5.66070 5.81655 6.08415 6.32368 6.35490 6.50953 6.76658 7.10983 7.17183 7.76564 8.38522 9.20795 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.002829 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.954132 B = 9896.765647 C =10692.479237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.562 5.562 3 C 0.537 3.463 4 O -0.561 6.561 5 C -0.314 4.314 6 C 0.206 3.794 7 N -0.516 5.516 8 C 0.095 3.905 9 C 0.496 3.504 10 O -0.578 6.578 11 N -0.697 5.697 12 C 0.149 3.851 13 H 0.099 0.901 14 C -0.129 4.129 15 C 0.151 3.849 16 N -0.622 5.622 17 C -0.244 4.244 18 H 0.067 0.933 19 C -0.057 4.057 20 N -0.941 5.941 21 Si 0.975 3.025 22 H -0.288 1.288 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.124 3.876 26 C 0.688 3.312 27 O -0.569 6.569 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.197 0.803 32 H 0.237 0.763 33 H 0.131 0.869 34 H 0.198 0.802 35 H 0.416 0.584 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.003 0.997 40 H 0.249 0.751 41 H 0.020 0.980 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 18.713 -11.047 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.305 5.305 3 C 0.336 3.664 4 O -0.441 6.441 5 C -0.339 4.339 6 C 0.084 3.916 7 N -0.234 5.234 8 C -0.029 4.029 9 C 0.282 3.718 10 O -0.458 6.458 11 N -0.348 5.348 12 C 0.043 3.957 13 H 0.117 0.883 14 C -0.168 4.168 15 C 0.027 3.973 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.590 5.590 21 Si 0.804 3.196 22 H -0.215 1.215 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.003 4.003 26 C 0.391 3.609 27 O -0.445 6.445 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.214 0.786 32 H 0.253 0.747 33 H 0.149 0.851 34 H 0.215 0.785 35 H 0.253 0.747 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 4.368 18.860 -10.388 21.970 hybrid contribution -1.174 -1.358 0.295 1.820 sum 3.194 17.502 -10.093 20.455 Atomic orbital electron populations 1.21968 0.75187 1.05292 1.04143 1.46491 1.11069 1.06497 1.66436 1.18105 0.90569 0.82186 0.75509 1.90836 1.71710 1.30260 1.51271 1.22070 0.90939 1.01021 1.19907 1.23162 1.01058 0.82223 0.85194 1.44462 1.04062 1.09249 1.65597 1.22071 1.02695 0.84240 0.93935 1.21381 0.76885 0.81090 0.92439 1.90741 1.51717 1.56000 1.47306 1.45780 1.58515 1.21644 1.08894 1.21700 0.94374 0.96367 0.83283 0.88302 1.23252 0.96060 0.94127 1.03346 1.21904 0.85180 0.96232 0.93994 1.44765 1.19054 1.00078 1.71000 1.19339 0.99168 0.85701 1.33134 0.91475 1.25489 0.98796 0.99347 1.01424 1.69989 1.20234 1.19603 1.49163 0.85134 0.77675 0.79031 0.77800 1.21461 1.21349 1.20176 1.21788 0.96330 0.85138 0.97009 1.16101 0.82610 0.83892 0.78267 1.91034 1.66908 1.31284 1.55226 0.87689 0.89382 0.90894 0.78638 0.74683 0.85092 0.78518 0.74715 0.87284 0.90273 0.90795 0.97949 0.94089 0.96223 0.97879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 10.00 127.77 1.28 2.94 16 2 N -0.56 -14.03 2.96 -806.44 -2.39 -16.41 16 3 C 0.54 12.87 7.45 85.05 0.63 13.50 16 4 O -0.56 -16.78 16.44 -4.62 -0.08 -16.85 16 5 C -0.31 -4.53 10.00 22.35 0.22 -4.31 16 6 C 0.21 1.99 10.38 83.17 0.86 2.85 16 7 N -0.52 -8.78 2.10 -660.90 -1.39 -10.17 16 8 C 0.09 1.23 5.82 85.63 0.50 1.73 16 9 C 0.50 11.58 7.90 87.66 0.69 12.27 16 10 O -0.58 -18.89 16.12 -3.03 -0.05 -18.94 16 11 N -0.70 -16.67 5.10 -436.92 -2.23 -18.90 16 12 C 0.15 4.63 3.28 46.18 0.15 4.78 16 13 H 0.10 2.98 7.62 -2.39 -0.02 2.96 16 14 C -0.13 -3.92 6.69 32.16 0.22 -3.71 16 15 C 0.15 6.66 5.87 87.03 0.51 7.17 16 16 N -0.62 -31.42 3.40 -691.01 -2.35 -33.77 16 17 C -0.24 -13.84 10.27 84.03 0.86 -12.98 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.06 -3.20 5.49 84.86 0.47 -2.74 16 20 N -0.94 -53.56 10.09 21.65 0.22 -53.35 16 21 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 C 0.12 5.33 6.98 86.73 0.61 5.94 16 26 C 0.69 17.79 8.12 179.18 1.45 19.25 16 27 O -0.57 -18.73 15.79 -3.99 -0.06 -18.79 16 28 H 0.10 2.20 6.90 -2.39 -0.02 2.18 16 29 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.24 -0.55 8.06 -2.91 -0.02 -0.57 16 33 H 0.13 1.94 7.37 -2.39 -0.02 1.92 16 34 H 0.20 -0.13 8.03 -2.39 -0.02 -0.15 16 35 H 0.42 7.93 8.63 -92.71 -0.80 7.13 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 3.81 5.87 -2.39 -0.01 3.79 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 40 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.00 0.15 8.04 -2.38 -0.02 0.13 16 Total: -1.00 -87.30 354.69 2.42 -84.87 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.26 Total: 8.08 kcal Atomic # 6 Polarization: 38.25 SS G_CDS: 8.46 Total: 46.71 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -8.13 Total: -132.59 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.19 Total: -54.58 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -87.30 2.42 -84.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014637961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.993 kcal (2) G-P(sol) polarization free energy of solvation -87.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds