Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35839 * 119.25066 * 2 1 4 4 C 1.38124 * 119.31975 * 180.27674 * 3 2 1 5 5 C 1.47064 * 120.95570 * 179.70171 * 4 3 2 6 6 O 1.21647 * 120.00291 * 354.40752 * 5 4 3 7 7 N 1.34774 * 119.99968 * 174.67878 * 5 4 3 8 8 C 1.46500 * 120.00003 * 184.84190 * 7 5 4 9 9 H 1.08999 * 110.89029 * 328.87640 * 8 7 5 10 10 C 1.55159 * 111.00518 * 204.99873 * 8 7 5 11 11 C 1.54319 * 102.94327 * 277.42691 * 10 8 7 12 12 N 1.47016 * 107.27130 * 337.80945 * 11 10 8 13 13 C 1.36939 * 125.64908 * 178.99047 * 12 11 10 14 14 H 1.07999 * 120.00288 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99810 * 359.96585 * 13 12 11 16 16 N 1.31616 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99695 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46712 * 90.00188 * 17 15 13 19 19 H 1.48497 * 109.46664 * 210.00094 * 17 15 13 20 20 H 1.48498 * 109.47276 * 330.00218 * 17 15 13 21 21 C 1.47422 * 108.70514 * 358.93648 * 12 11 10 22 22 C 1.47170 * 118.08505 * 359.43794 * 4 3 2 23 23 O 1.21680 * 120.73429 * 180.25198 * 22 4 3 24 24 N 1.34969 * 118.53080 * 0.26715 * 22 4 3 25 25 C 1.46498 * 119.78208 * 180.02562 * 24 22 4 26 26 C 1.34225 * 119.24679 * 179.69650 * 2 1 3 27 27 O 1.21550 * 118.94200 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.47029 * 270.30293 * 1 2 3 29 29 H 1.09004 * 109.47205 * 30.30282 * 1 2 3 30 30 H 1.09000 * 109.47610 * 150.30205 * 1 2 3 31 31 H 1.08001 * 120.34048 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00007 * 4.83881 * 7 5 4 33 33 H 1.09005 * 110.72092 * 35.79178 * 10 8 7 34 34 H 1.09002 * 110.72385 * 159.06112 * 10 8 7 35 35 H 1.09002 * 109.88106 * 97.22582 * 11 10 8 36 36 H 1.08999 * 109.88319 * 218.38484 * 11 10 8 37 37 H 0.97000 * 120.00059 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.36599 * 265.29583 * 21 12 11 39 39 H 1.08993 * 110.36866 * 142.96965 * 21 12 11 40 40 H 1.08995 * 109.47293 * 359.97438 * 25 24 22 41 41 H 1.09005 * 109.47508 * 120.00120 * 25 24 22 42 42 H 1.09007 * 109.47352 * 240.00189 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1287 1.1852 0.0000 4 6 3.5100 1.1869 -0.0058 5 6 4.2649 2.4489 -0.0126 6 8 3.6769 3.5089 -0.1158 7 7 5.6086 2.4310 0.0901 8 6 6.3524 3.6891 0.1902 9 1 5.8421 4.4864 -0.3500 10 6 7.8082 3.5164 -0.3181 11 6 8.5341 2.9226 0.9074 12 7 7.7452 3.2774 2.0962 13 6 8.0403 2.9216 3.3852 14 1 7.3948 3.2336 4.1928 15 6 9.1692 2.1597 3.6538 16 7 9.9562 1.7797 2.6696 17 14 9.5714 1.6738 5.4121 18 1 8.9241 0.3749 5.7270 19 1 11.0427 1.5438 5.5655 20 1 9.0670 2.7163 6.3415 21 6 6.5845 4.0806 1.6709 22 6 4.2044 -0.1107 0.0009 23 8 5.4200 -0.1654 0.0008 24 7 3.4631 -1.2386 0.0069 25 6 4.1260 -2.5450 0.0143 26 6 2.1208 -1.1711 0.0062 27 8 1.4800 -2.2040 0.0112 28 1 -0.3633 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5185 30 1 -0.3634 -0.8927 -0.5091 31 1 1.5821 2.1166 -0.0004 32 1 6.0831 1.5851 0.0977 33 1 7.8433 2.8246 -1.1598 34 1 8.2381 4.4801 -0.5915 35 1 8.5949 1.8384 0.8128 36 1 9.5352 3.3466 0.9866 37 1 10.7452 1.2476 2.8573 38 1 6.8093 5.1442 1.7513 39 1 5.7097 3.8305 2.2710 40 1 5.2068 -2.4040 0.0134 41 1 3.8320 -3.0967 0.9072 42 1 3.8325 -3.1064 -0.8728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015788315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -27.525111 kcal Electronic energy + Delta-G solvation = -28093.881484 eV Core-core repulsion = 24076.345880 eV Total energy + Delta-G solvation = -4017.535604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.58106 -39.79887 -38.96442 -37.68135 -36.96717 -35.60065 -33.54240 -32.22770 -31.45927 -29.10901 -28.65682 -27.49808 -27.03033 -24.84962 -24.10590 -23.77216 -21.27096 -20.00106 -19.93801 -19.28741 -18.27587 -17.59397 -17.51746 -16.76927 -16.10934 -15.92375 -15.64466 -15.20861 -15.14182 -14.64009 -14.56358 -14.07436 -13.92885 -13.80349 -13.60965 -13.19178 -13.12149 -12.91185 -12.57633 -12.36866 -11.84719 -11.74268 -11.71968 -11.26858 -10.90246 -10.83127 -10.65027 -10.42060 -10.28614 -10.06909 -10.06450 -9.84958 -9.71031 -9.59379 -8.93985 -8.60078 -8.36761 -6.72796 -5.63558 -2.95843 0.46166 1.48705 1.55383 2.54312 2.77922 3.44287 3.47565 3.49166 3.51096 3.62006 3.91836 4.35742 4.51398 4.56575 4.75953 4.80846 5.04913 5.10012 5.13950 5.20245 5.23642 5.44024 5.51702 5.55793 5.56810 5.65229 5.87111 5.90631 5.96485 6.31306 6.48916 6.60715 6.62912 6.74624 6.80602 7.11930 7.17627 7.54582 7.62821 7.68660 7.89196 8.09516 8.33777 8.64734 9.30030 9.90410 10.56751 11.48345 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.003958 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.662670 B = 7072.114974 C = 7996.929792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.529 5.529 3 C 0.236 3.764 4 C -0.305 4.305 5 C 0.587 3.413 6 O -0.563 6.563 7 N -0.688 5.688 8 C 0.125 3.875 9 H 0.091 0.909 10 C -0.153 4.153 11 C 0.176 3.824 12 N -0.603 5.603 13 C -0.224 4.224 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.126 3.874 22 C 0.555 3.445 23 O -0.484 6.484 24 N -0.552 5.552 25 C 0.078 3.922 26 C 0.693 3.307 27 O -0.535 6.535 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.196 0.804 32 H 0.417 0.583 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.251 0.749 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.790 -4.363 -9.451 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.247 5.247 3 C 0.108 3.892 4 C -0.318 4.318 5 C 0.372 3.628 6 O -0.445 6.445 7 N -0.344 5.344 8 C 0.019 3.981 9 H 0.109 0.891 10 C -0.192 4.192 11 C 0.051 3.949 12 N -0.330 5.330 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.741 3.259 18 H -0.218 1.218 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.001 4.001 22 C 0.349 3.651 23 O -0.356 6.356 24 N -0.295 5.295 25 C -0.062 4.062 26 C 0.396 3.604 27 O -0.408 6.408 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.213 0.787 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.704 -4.542 -9.386 21.414 hybrid contribution 0.498 -0.726 1.068 1.384 sum -18.205 -5.268 -8.318 20.697 Atomic orbital electron populations 1.22245 0.73985 1.05751 1.04687 1.44466 1.10070 1.04312 1.65819 1.22872 0.92486 0.89917 0.83937 1.21702 0.92746 0.93961 1.23362 1.16911 0.82688 0.86268 0.76890 1.90757 1.69693 1.30839 1.53175 1.46192 1.05648 1.11805 1.70735 1.22190 0.91977 0.85868 0.98027 0.89072 1.23212 0.94390 1.01486 1.00142 1.21168 0.93316 0.98339 0.82050 1.44458 1.24714 1.60514 1.03309 1.19035 1.06483 1.27087 0.82643 0.90642 1.24766 0.97657 1.00558 0.97452 1.69958 1.16112 1.41672 1.29159 0.86148 0.77278 0.78336 0.84183 1.21784 1.21714 1.20784 1.21941 0.91374 0.94570 0.92223 1.18505 0.87528 0.83363 0.75705 1.90744 1.12311 1.85508 1.47068 1.46199 1.05585 1.10816 1.66945 1.21995 0.99909 0.80491 1.03838 1.15726 0.81924 0.84012 0.78694 1.91008 1.65026 1.31151 1.53660 0.90021 0.88628 0.88269 0.78725 0.73880 0.91607 0.90954 0.93465 0.93810 0.93875 0.95395 0.94156 0.87443 0.90122 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.30 59.85 0.62 0.94 16 2 N -0.53 -4.49 2.97 -128.51 -0.38 -4.87 16 3 C 0.24 2.19 9.96 -15.82 -0.16 2.03 16 4 C -0.30 -4.17 6.05 -102.74 -0.62 -4.79 16 5 C 0.59 9.97 7.75 -12.68 -0.10 9.87 16 6 O -0.56 -10.14 16.02 5.24 0.08 -10.06 16 7 N -0.69 -12.97 5.13 -52.91 -0.27 -13.24 16 8 C 0.13 2.40 3.47 -65.78 -0.23 2.17 16 9 H 0.09 1.63 7.48 -51.93 -0.39 1.24 16 10 C -0.15 -2.95 6.55 -24.90 -0.16 -3.11 16 11 C 0.18 4.36 5.36 -3.07 -0.02 4.34 16 12 N -0.60 -15.86 3.39 -170.08 -0.58 -16.43 16 13 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 14 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 15 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 17 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.13 2.79 6.93 -2.53 -0.02 2.77 16 22 C 0.56 8.19 7.63 -12.55 -0.10 8.09 16 23 O -0.48 -8.63 13.37 5.21 0.07 -8.56 16 24 N -0.55 -6.87 2.96 -129.65 -0.38 -7.25 16 25 C 0.08 0.82 9.96 59.85 0.60 1.42 16 26 C 0.69 7.90 8.09 -87.74 -0.71 7.19 16 27 O -0.54 -6.85 15.61 5.32 0.08 -6.77 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.14 8.01 -51.93 -0.42 -0.28 16 30 H 0.10 0.48 7.31 -51.93 -0.38 0.10 16 31 H 0.20 1.25 7.69 -52.49 -0.40 0.85 16 32 H 0.42 8.42 5.42 -40.82 -0.22 8.20 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 36 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.11 1.19 6.92 -51.93 -0.36 0.84 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -36.18 349.33 -7.16 -43.34 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.45 Total: 3.90 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: -1.15 Total: 24.00 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -1.04 Total: -68.78 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.24 Total: -25.38 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.18 -7.16 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015788315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.812 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds