Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35839 * 119.25066 * 2 1 4 4 C 1.38124 * 119.31975 * 180.27674 * 3 2 1 5 5 C 1.47064 * 120.95570 * 179.70171 * 4 3 2 6 6 O 1.21647 * 120.00291 * 354.40752 * 5 4 3 7 7 N 1.34774 * 119.99968 * 174.67878 * 5 4 3 8 8 C 1.46500 * 120.00003 * 184.84190 * 7 5 4 9 9 H 1.08999 * 110.89029 * 328.87640 * 8 7 5 10 10 C 1.55159 * 111.00518 * 204.99873 * 8 7 5 11 11 C 1.54319 * 102.94327 * 277.42691 * 10 8 7 12 12 N 1.47016 * 107.27130 * 337.80945 * 11 10 8 13 13 C 1.36939 * 125.64908 * 178.99047 * 12 11 10 14 14 H 1.07999 * 120.00288 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99810 * 359.96585 * 13 12 11 16 16 N 1.31616 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99695 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46712 * 90.00188 * 17 15 13 19 19 H 1.48497 * 109.46664 * 210.00094 * 17 15 13 20 20 H 1.48498 * 109.47276 * 330.00218 * 17 15 13 21 21 C 1.47422 * 108.70514 * 358.93648 * 12 11 10 22 22 C 1.47170 * 118.08505 * 359.43794 * 4 3 2 23 23 O 1.21680 * 120.73429 * 180.25198 * 22 4 3 24 24 N 1.34969 * 118.53080 * 0.26715 * 22 4 3 25 25 C 1.46498 * 119.78208 * 180.02562 * 24 22 4 26 26 C 1.34225 * 119.24679 * 179.69650 * 2 1 3 27 27 O 1.21550 * 118.94200 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.47029 * 270.30293 * 1 2 3 29 29 H 1.09004 * 109.47205 * 30.30282 * 1 2 3 30 30 H 1.09000 * 109.47610 * 150.30205 * 1 2 3 31 31 H 1.08001 * 120.34048 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00007 * 4.83881 * 7 5 4 33 33 H 1.09005 * 110.72092 * 35.79178 * 10 8 7 34 34 H 1.09002 * 110.72385 * 159.06112 * 10 8 7 35 35 H 1.09002 * 109.88106 * 97.22582 * 11 10 8 36 36 H 1.08999 * 109.88319 * 218.38484 * 11 10 8 37 37 H 0.97000 * 120.00059 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.36599 * 265.29583 * 21 12 11 39 39 H 1.08993 * 110.36866 * 142.96965 * 21 12 11 40 40 H 1.08995 * 109.47293 * 359.97438 * 25 24 22 41 41 H 1.09005 * 109.47508 * 120.00120 * 25 24 22 42 42 H 1.09007 * 109.47352 * 240.00189 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1287 1.1852 0.0000 4 6 3.5100 1.1869 -0.0058 5 6 4.2649 2.4489 -0.0126 6 8 3.6769 3.5089 -0.1158 7 7 5.6086 2.4310 0.0901 8 6 6.3524 3.6891 0.1902 9 1 5.8421 4.4864 -0.3500 10 6 7.8082 3.5164 -0.3181 11 6 8.5341 2.9226 0.9074 12 7 7.7452 3.2774 2.0962 13 6 8.0403 2.9216 3.3852 14 1 7.3948 3.2336 4.1928 15 6 9.1692 2.1597 3.6538 16 7 9.9562 1.7797 2.6696 17 14 9.5714 1.6738 5.4121 18 1 8.9241 0.3749 5.7270 19 1 11.0427 1.5438 5.5655 20 1 9.0670 2.7163 6.3415 21 6 6.5845 4.0806 1.6709 22 6 4.2044 -0.1107 0.0009 23 8 5.4200 -0.1654 0.0008 24 7 3.4631 -1.2386 0.0069 25 6 4.1260 -2.5450 0.0143 26 6 2.1208 -1.1711 0.0062 27 8 1.4800 -2.2040 0.0112 28 1 -0.3633 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5185 30 1 -0.3634 -0.8927 -0.5091 31 1 1.5821 2.1166 -0.0004 32 1 6.0831 1.5851 0.0977 33 1 7.8433 2.8246 -1.1598 34 1 8.2381 4.4801 -0.5915 35 1 8.5949 1.8384 0.8128 36 1 9.5352 3.3466 0.9866 37 1 10.7452 1.2476 2.8573 38 1 6.8093 5.1442 1.7513 39 1 5.7097 3.8305 2.2710 40 1 5.2068 -2.4040 0.0134 41 1 3.8320 -3.0967 0.9072 42 1 3.8325 -3.1064 -0.8728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015788315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -53.843337 kcal Electronic energy + Delta-G solvation = -28095.022728 eV Core-core repulsion = 24076.345880 eV Total energy + Delta-G solvation = -4018.676848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.51052 -41.01987 -40.13155 -38.96742 -38.26093 -36.63140 -35.28273 -33.63211 -32.82001 -30.96367 -29.51623 -28.98258 -27.97092 -26.54834 -25.46342 -24.71178 -22.56156 -21.91229 -21.32907 -20.37983 -19.39207 -18.77203 -18.54480 -18.41986 -17.40081 -16.96395 -16.80148 -16.63055 -16.11288 -16.06322 -15.87256 -15.60403 -15.37308 -15.15002 -14.75209 -14.54450 -13.97720 -13.94220 -13.82115 -13.52936 -13.47169 -13.33043 -12.90170 -12.78947 -12.44985 -12.25419 -12.19911 -12.09865 -12.01106 -11.81700 -11.65560 -11.49028 -11.05471 -11.04346 -10.71187 -10.06026 -9.70804 -8.84005 -7.83127 -5.17617 -0.43103 0.54326 0.68101 1.43614 1.45920 1.54617 1.61908 1.69915 2.30273 2.46586 2.49819 3.00778 3.35470 3.59489 3.70348 3.75939 3.86913 4.03175 4.12069 4.16797 4.26299 4.32683 4.35862 4.39371 4.49180 4.68175 4.69912 4.80364 4.83516 4.90043 4.92600 5.01861 5.03352 5.09157 5.44561 5.64080 5.70129 5.77690 5.88275 6.16668 6.21215 6.54777 6.74452 7.12154 7.28187 7.79197 8.43979 9.27215 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.003958 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.662670 B = 7072.114974 C = 7996.929792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.517 5.517 3 C 0.292 3.708 4 C -0.352 4.352 5 C 0.589 3.411 6 O -0.576 6.576 7 N -0.704 5.704 8 C 0.137 3.863 9 H 0.114 0.886 10 C -0.136 4.136 11 C 0.187 3.813 12 N -0.622 5.622 13 C -0.241 4.241 14 H 0.077 0.923 15 C -0.064 4.064 16 N -0.948 5.948 17 Si 0.976 3.024 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.269 1.269 21 C 0.123 3.877 22 C 0.552 3.448 23 O -0.530 6.530 24 N -0.554 5.554 25 C 0.075 3.925 26 C 0.689 3.311 27 O -0.547 6.547 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.236 0.764 32 H 0.409 0.591 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.008 0.992 36 H 0.011 0.989 37 H 0.246 0.754 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 -3.698 -9.706 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.231 5.231 3 C 0.161 3.839 4 C -0.365 4.365 5 C 0.378 3.622 6 O -0.459 6.459 7 N -0.359 5.359 8 C 0.031 3.969 9 H 0.132 0.868 10 C -0.175 4.175 11 C 0.062 3.938 12 N -0.348 5.348 13 C -0.370 4.370 14 H 0.095 0.905 15 C -0.257 4.257 16 N -0.597 5.597 17 Si 0.805 3.195 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.194 1.194 21 C -0.003 4.003 22 C 0.348 3.652 23 O -0.406 6.406 24 N -0.297 5.297 25 C -0.066 4.066 26 C 0.393 3.607 27 O -0.421 6.421 28 H 0.115 0.885 29 H 0.154 0.846 30 H 0.114 0.886 31 H 0.253 0.747 32 H 0.252 0.748 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.977 -3.884 -9.649 24.314 hybrid contribution 1.273 -0.990 1.143 1.977 sum -20.704 -4.874 -8.506 22.907 Atomic orbital electron populations 1.22714 0.70817 1.07645 1.06350 1.44813 1.11738 1.03191 1.63391 1.23333 0.91004 0.91134 0.78412 1.21292 0.94202 0.92011 1.28952 1.17216 0.82035 0.87295 0.75701 1.90730 1.69654 1.31576 1.53943 1.46309 1.06662 1.11084 1.71863 1.22063 0.92118 0.86902 0.95824 0.86835 1.23076 0.93901 1.02664 0.97850 1.20886 0.92647 0.96100 0.84214 1.44709 1.26159 1.60954 1.03013 1.19399 1.06563 1.27024 0.84036 0.90506 1.25603 0.97740 1.00920 1.01447 1.70185 1.16274 1.42236 1.31014 0.85114 0.76693 0.78022 0.79721 1.21664 1.21802 1.19358 1.22106 0.89501 0.94513 0.94176 1.18733 0.87148 0.84268 0.75031 1.90715 1.14129 1.86054 1.49698 1.46281 1.06211 1.10800 1.66373 1.22092 0.99257 0.80151 1.05054 1.15903 0.81432 0.84842 0.78568 1.91009 1.65054 1.31859 1.54168 0.88505 0.84638 0.88591 0.74746 0.74807 0.90040 0.88426 0.97373 0.97065 0.94499 0.94185 0.95121 0.88715 0.89345 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 10.30 127.77 1.32 1.57 16 2 N -0.52 -6.93 2.97 -679.09 -2.02 -8.95 16 3 C 0.29 4.35 9.96 84.05 0.84 5.19 16 4 C -0.35 -9.16 6.05 -18.64 -0.11 -9.28 16 5 C 0.59 19.44 7.75 86.56 0.67 20.12 16 6 O -0.58 -19.51 16.02 -4.18 -0.07 -19.57 16 7 N -0.70 -26.64 5.13 -439.56 -2.25 -28.90 16 8 C 0.14 5.15 3.47 46.38 0.16 5.31 16 9 H 0.11 3.81 7.48 -2.39 -0.02 3.79 16 10 C -0.14 -5.19 6.55 31.78 0.21 -4.99 16 11 C 0.19 9.60 5.36 86.73 0.47 10.07 16 12 N -0.62 -33.53 3.39 -692.02 -2.35 -35.88 16 13 C -0.24 -14.18 10.28 84.03 0.86 -13.32 16 14 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 15 C -0.06 -3.79 5.49 84.86 0.47 -3.32 16 16 N -0.95 -58.96 10.31 21.65 0.22 -58.73 16 17 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C 0.12 5.45 6.93 86.86 0.60 6.05 16 22 C 0.55 16.46 7.63 86.56 0.66 17.12 16 23 O -0.53 -19.94 13.37 -4.28 -0.06 -20.00 16 24 N -0.55 -13.53 2.96 -800.69 -2.37 -15.90 16 25 C 0.07 1.58 9.96 127.77 1.27 2.86 16 26 C 0.69 14.33 8.09 179.34 1.45 15.78 16 27 O -0.55 -12.88 15.61 -3.87 -0.06 -12.94 16 28 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.14 -0.45 8.01 -2.38 -0.02 -0.46 16 30 H 0.10 0.56 7.31 -2.39 -0.02 0.55 16 31 H 0.24 1.69 7.69 -2.91 -0.02 1.66 16 32 H 0.41 17.15 5.42 -92.71 -0.50 16.65 16 33 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 34 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 36 H 0.01 0.64 7.50 -2.39 -0.02 0.62 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 2.26 6.92 -2.39 -0.02 2.24 16 41 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -82.45 349.33 2.49 -79.95 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.56 Total: 18.17 kcal Atomic # 6 Polarization: 44.30 SS G_CDS: 8.86 Total: 53.16 kcal Atomic # 7 Polarization: -139.58 SS G_CDS: -8.77 Total: -148.35 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.18 Total: -52.52 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -82.45 2.49 -79.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015788315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.108 kcal (2) G-P(sol) polarization free energy of solvation -82.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds