Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34840 * 119.86397 * 2 1 4 4 O 1.21783 * 120.30841 * 0.02562 * 3 2 1 5 5 C 1.41575 * 119.38299 * 179.72840 * 3 2 1 6 6 C 1.35022 * 119.11089 * 0.25041 * 5 3 2 7 7 N 1.36833 * 119.68814 * 0.02562 * 6 5 3 8 8 C 1.46499 * 119.68999 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47418 * 90.00044 * 8 7 6 10 10 O 1.21281 * 119.99866 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00263 * 180.02562 * 9 8 7 12 12 C 1.47020 * 125.64550 * 359.68590 * 11 9 8 13 13 C 1.54339 * 107.26439 * 178.85613 * 12 11 9 14 14 C 1.55156 * 103.02013 * 338.13914 * 13 12 11 15 15 H 1.09005 * 111.00560 * 277.23531 * 14 13 12 16 16 N 1.46502 * 111.00607 * 153.38355 * 14 13 12 17 17 C 1.36926 * 119.99999 * 92.80289 * 16 14 13 18 18 H 1.08004 * 120.00271 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00106 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00176 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99769 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47116 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.47050 * 210.00131 * 21 19 17 24 24 H 1.48505 * 109.47295 * 329.99939 * 21 19 17 25 25 C 1.47427 * 125.65071 * 180.02562 * 11 9 8 26 26 C 1.34534 * 120.61984 * 0.02562 * 7 6 5 27 27 O 1.21594 * 119.53563 * 179.97438 * 26 7 6 28 28 H 1.08992 * 109.47349 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46816 * 119.99938 * 1 2 3 30 30 H 1.08998 * 109.46836 * 239.99236 * 1 2 3 31 31 H 1.07996 * 120.44338 * 180.23174 * 5 3 2 32 32 H 1.08003 * 120.15400 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47069 * 210.00150 * 8 7 6 34 34 H 1.09003 * 109.47275 * 329.99949 * 8 7 6 35 35 H 1.09002 * 109.88826 * 298.39694 * 12 11 9 36 36 H 1.08998 * 109.88237 * 59.56728 * 12 11 9 37 37 H 1.09004 * 110.84493 * 219.67725 * 13 12 11 38 38 H 1.08997 * 110.67096 * 96.52563 * 13 12 11 39 39 H 0.97000 * 119.99680 * 272.80563 * 16 14 13 40 40 H 0.97002 * 119.99554 * 179.97438 * 20 19 17 41 41 H 1.09010 * 110.36099 * 322.92401 * 25 11 9 42 42 H 1.08996 * 110.36879 * 85.13601 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5308 2.2258 0.0005 5 6 3.5522 1.1575 0.0058 6 6 4.1992 -0.0277 0.0061 7 7 3.4805 -1.1921 0.0003 8 6 4.1825 -2.4780 0.0012 9 6 4.4162 -2.9218 1.4222 10 8 4.0344 -2.2316 2.3436 11 7 5.0503 -4.0851 1.6693 12 6 5.5583 -5.0169 0.6519 13 6 6.2304 -6.1885 1.3986 14 6 6.5553 -5.5775 2.7873 15 1 7.4874 -5.0132 2.7575 16 7 6.6055 -6.6162 3.8193 17 6 7.7981 -7.2095 4.1360 18 1 8.7020 -6.9116 3.6254 19 6 7.8456 -8.1941 5.1135 20 7 8.9922 -8.7641 5.4183 21 14 6.2823 -8.7099 5.9962 22 1 5.6405 -9.8254 5.2553 23 1 6.6155 -9.1568 7.3726 24 1 5.3480 -7.5575 6.0626 25 6 5.3432 -4.6374 3.0045 26 6 2.1354 -1.1671 -0.0063 27 8 1.5165 -2.2138 -0.0119 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5139 0.8899 31 1 4.1072 2.0839 0.0097 32 1 5.2788 -0.0564 0.0102 33 1 3.5779 -3.2222 -0.5171 34 1 5.1403 -2.3695 -0.5077 35 1 4.7333 -5.3873 0.0434 36 1 6.2904 -4.5134 0.0206 37 1 7.1435 -6.4992 0.8909 38 1 5.5415 -7.0273 1.4979 39 1 5.7937 -6.8835 4.2782 40 1 9.0253 -9.4518 6.1016 41 1 5.6033 -3.8369 3.6973 42 1 4.4873 -5.1990 3.3788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018938192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = -31.542338 kcal Electronic energy + Delta-G solvation = -27074.348006 eV Core-core repulsion = 23056.638201 eV Total energy + Delta-G solvation = -4017.709804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69004 -40.25369 -39.19292 -37.90482 -37.16410 -35.50046 -34.44257 -32.52994 -31.73610 -30.10495 -29.21178 -28.36480 -27.30694 -24.27314 -24.08040 -23.33418 -22.79522 -20.40734 -19.84191 -19.57069 -18.15868 -17.96791 -17.65488 -17.36019 -16.86600 -16.45718 -15.98558 -15.47162 -15.34771 -14.90350 -14.38664 -14.25314 -14.08945 -14.01185 -13.76226 -13.63596 -13.43048 -12.89632 -12.75822 -12.62533 -12.58232 -12.23064 -12.15310 -12.00945 -11.56049 -11.23298 -10.99772 -10.86037 -10.59502 -10.58304 -10.21835 -10.16703 -10.08295 -9.72927 -9.08831 -8.96290 -8.73939 -7.46193 -5.90586 -3.29028 0.63279 1.41289 1.68576 2.32471 2.55650 2.82029 3.18438 3.29680 3.32740 3.38649 3.96805 4.10468 4.17941 4.43838 4.47333 4.67575 4.73858 4.78744 5.01504 5.03349 5.04545 5.07346 5.13640 5.22527 5.26201 5.39436 5.40873 5.50997 5.63839 5.70869 5.73147 5.95970 5.99985 6.10384 6.23228 6.39127 6.63787 6.83135 7.16140 7.34741 7.56315 7.81582 7.88928 8.27484 9.03489 9.76005 9.93310 11.26834 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.002466 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.073741 B =11350.181909 C =11556.590664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.556 5.556 3 C 0.549 3.451 4 O -0.521 6.521 5 C -0.298 4.298 6 C 0.186 3.814 7 N -0.519 5.519 8 C 0.096 3.904 9 C 0.511 3.489 10 O -0.533 6.533 11 N -0.607 5.607 12 C 0.095 3.905 13 C -0.156 4.156 14 C 0.178 3.822 15 H 0.077 0.923 16 N -0.737 5.737 17 C -0.253 4.253 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.095 3.905 26 C 0.699 3.301 27 O -0.534 6.534 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.364 0.636 40 H 0.262 0.738 41 H 0.080 0.920 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 16.061 -16.906 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.300 5.300 3 C 0.346 3.654 4 O -0.397 6.397 5 C -0.325 4.325 6 C 0.062 3.938 7 N -0.238 5.238 8 C -0.030 4.030 9 C 0.297 3.703 10 O -0.410 6.410 11 N -0.342 5.342 12 C -0.028 4.028 13 C -0.197 4.197 14 C 0.067 3.933 15 H 0.095 0.905 16 N -0.379 5.379 17 C -0.382 4.382 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.575 5.575 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.028 4.028 26 C 0.403 3.597 27 O -0.406 6.406 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.190 0.810 32 H 0.196 0.804 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.197 0.803 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.805 16.290 -16.379 25.503 hybrid contribution -0.926 -0.622 0.735 1.336 sum -11.730 15.668 -15.644 25.057 Atomic orbital electron populations 1.21907 0.75294 1.05133 1.03855 1.46306 1.10467 1.06259 1.66942 1.17403 0.89033 0.82902 0.76070 1.90867 1.70733 1.29284 1.48800 1.21880 0.92939 0.99095 1.18542 1.22356 0.99010 0.84110 0.88317 1.44302 1.05112 1.07590 1.66763 1.21733 0.99846 0.84809 0.96605 1.20265 0.78360 0.80683 0.91031 1.90768 1.50532 1.53816 1.45861 1.48376 1.56503 1.19747 1.09539 1.22241 0.98126 0.91247 0.91209 1.23406 1.00964 0.96401 0.98892 1.21258 0.95200 0.88955 0.87935 0.90533 1.42615 1.08059 1.43689 1.43509 1.19019 0.86593 1.15135 1.17469 0.88954 1.24680 0.96420 0.98681 0.98867 1.69694 1.23676 1.29308 1.34801 0.86578 0.83766 0.78607 0.79727 1.20914 1.21553 1.20212 1.22678 0.98937 0.97766 0.83432 1.15758 0.81275 0.84391 0.78318 1.91030 1.65768 1.30166 1.53662 0.87974 0.90357 0.90321 0.80962 0.80386 0.84997 0.85266 0.91454 0.91261 0.89946 0.90548 0.80258 0.92830 0.90171 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.00 59.85 0.60 1.33 16 2 N -0.56 -6.29 2.96 -131.49 -0.39 -6.68 16 3 C 0.55 6.27 7.45 -14.96 -0.11 6.16 16 4 O -0.52 -7.28 16.44 5.11 0.08 -7.19 16 5 C -0.30 -2.38 10.00 -39.45 -0.39 -2.78 16 6 C 0.19 1.21 10.38 -16.46 -0.17 1.04 16 7 N -0.52 -4.75 2.10 -122.83 -0.26 -5.01 16 8 C 0.10 0.73 5.01 -5.20 -0.03 0.71 16 9 C 0.51 6.30 7.92 -10.99 -0.09 6.22 16 10 O -0.53 -8.87 16.69 5.56 0.09 -8.78 16 11 N -0.61 -7.46 3.33 -170.50 -0.57 -8.03 16 12 C 0.09 0.91 6.49 -3.06 -0.02 0.89 16 13 C -0.16 -2.06 6.64 -24.89 -0.17 -2.23 16 14 C 0.18 2.96 3.72 -65.77 -0.24 2.71 16 15 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 16 N -0.74 -15.88 5.05 -51.34 -0.26 -16.14 16 17 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 18 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -27.88 13.97 55.49 0.78 -27.10 16 21 Si 0.88 21.14 27.74 -169.99 -4.71 16.42 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 25 C 0.10 1.44 6.55 -2.52 -0.02 1.43 16 26 C 0.70 8.37 8.12 -87.30 -0.71 7.66 16 27 O -0.53 -7.68 15.79 5.28 0.08 -7.59 16 28 H 0.10 0.89 6.90 -51.93 -0.36 0.53 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.18 0.42 8.06 -52.48 -0.42 -0.01 16 33 H 0.13 0.96 7.37 -51.93 -0.38 0.58 16 34 H 0.13 0.40 8.03 -51.93 -0.42 -0.02 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.36 7.84 5.62 -40.82 -0.23 7.61 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.29 8.04 -51.92 -0.42 0.88 16 42 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -37.08 356.40 -7.00 -44.08 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.61 Total: 4.09 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: -1.60 Total: 16.57 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.70 Total: -62.96 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.26 Total: -23.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.08 -7.00 -44.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018938192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.536 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds