Wall clock time and date at job start Fri Apr 10 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34840 * 119.86397 * 2 1 4 4 O 1.21783 * 120.30841 * 0.02562 * 3 2 1 5 5 C 1.41575 * 119.38299 * 179.72840 * 3 2 1 6 6 C 1.35022 * 119.11089 * 0.25041 * 5 3 2 7 7 N 1.36833 * 119.68814 * 0.02562 * 6 5 3 8 8 C 1.46499 * 119.68999 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47418 * 90.00044 * 8 7 6 10 10 O 1.21281 * 119.99866 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00263 * 180.02562 * 9 8 7 12 12 C 1.47020 * 125.64550 * 359.68590 * 11 9 8 13 13 C 1.54339 * 107.26439 * 178.85613 * 12 11 9 14 14 C 1.55156 * 103.02013 * 338.13914 * 13 12 11 15 15 H 1.09005 * 111.00560 * 277.23531 * 14 13 12 16 16 N 1.46502 * 111.00607 * 153.38355 * 14 13 12 17 17 C 1.36926 * 119.99999 * 92.80289 * 16 14 13 18 18 H 1.08004 * 120.00271 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00106 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00176 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99769 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47116 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.47050 * 210.00131 * 21 19 17 24 24 H 1.48505 * 109.47295 * 329.99939 * 21 19 17 25 25 C 1.47427 * 125.65071 * 180.02562 * 11 9 8 26 26 C 1.34534 * 120.61984 * 0.02562 * 7 6 5 27 27 O 1.21594 * 119.53563 * 179.97438 * 26 7 6 28 28 H 1.08992 * 109.47349 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46816 * 119.99938 * 1 2 3 30 30 H 1.08998 * 109.46836 * 239.99236 * 1 2 3 31 31 H 1.07996 * 120.44338 * 180.23174 * 5 3 2 32 32 H 1.08003 * 120.15400 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47069 * 210.00150 * 8 7 6 34 34 H 1.09003 * 109.47275 * 329.99949 * 8 7 6 35 35 H 1.09002 * 109.88826 * 298.39694 * 12 11 9 36 36 H 1.08998 * 109.88237 * 59.56728 * 12 11 9 37 37 H 1.09004 * 110.84493 * 219.67725 * 13 12 11 38 38 H 1.08997 * 110.67096 * 96.52563 * 13 12 11 39 39 H 0.97000 * 119.99680 * 272.80563 * 16 14 13 40 40 H 0.97002 * 119.99554 * 179.97438 * 20 19 17 41 41 H 1.09010 * 110.36099 * 322.92401 * 25 11 9 42 42 H 1.08996 * 110.36879 * 85.13601 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5308 2.2258 0.0005 5 6 3.5522 1.1575 0.0058 6 6 4.1992 -0.0277 0.0061 7 7 3.4805 -1.1921 0.0003 8 6 4.1825 -2.4780 0.0012 9 6 4.4162 -2.9218 1.4222 10 8 4.0344 -2.2316 2.3436 11 7 5.0503 -4.0851 1.6693 12 6 5.5583 -5.0169 0.6519 13 6 6.2304 -6.1885 1.3986 14 6 6.5553 -5.5775 2.7873 15 1 7.4874 -5.0132 2.7575 16 7 6.6055 -6.6162 3.8193 17 6 7.7981 -7.2095 4.1360 18 1 8.7020 -6.9116 3.6254 19 6 7.8456 -8.1941 5.1135 20 7 8.9922 -8.7641 5.4183 21 14 6.2823 -8.7099 5.9962 22 1 5.6405 -9.8254 5.2553 23 1 6.6155 -9.1568 7.3726 24 1 5.3480 -7.5575 6.0626 25 6 5.3432 -4.6374 3.0045 26 6 2.1354 -1.1671 -0.0063 27 8 1.5165 -2.2138 -0.0119 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5139 0.8899 31 1 4.1072 2.0839 0.0097 32 1 5.2788 -0.0564 0.0102 33 1 3.5779 -3.2222 -0.5171 34 1 5.1403 -2.3695 -0.5077 35 1 4.7333 -5.3873 0.0434 36 1 6.2904 -4.5134 0.0206 37 1 7.1435 -6.4992 0.8909 38 1 5.5415 -7.0273 1.4979 39 1 5.7937 -6.8835 4.2782 40 1 9.0253 -9.4518 6.1016 41 1 5.6033 -3.8369 3.6973 42 1 4.4873 -5.1990 3.3788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018938192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:06 Heat of formation + Delta-G solvation = -59.036188 kcal Electronic energy + Delta-G solvation = -27075.540228 eV Core-core repulsion = 23056.638201 eV Total energy + Delta-G solvation = -4018.902027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.46920 -41.21548 -40.10506 -38.92623 -38.07842 -36.38118 -36.05898 -33.67766 -33.05819 -31.41571 -30.14121 -29.23990 -28.28372 -25.47115 -24.87526 -24.55880 -23.92721 -21.76713 -20.75802 -20.31685 -19.75129 -18.88342 -18.65528 -18.15792 -17.77841 -17.54769 -16.88686 -16.50438 -16.24972 -16.08815 -15.68240 -15.55410 -15.15070 -14.84480 -14.72712 -14.51820 -14.41426 -14.35098 -13.81376 -13.59662 -13.47299 -13.34009 -13.22309 -13.09666 -12.92767 -12.66207 -12.28819 -12.19455 -12.11350 -11.82331 -11.56691 -11.46050 -11.17080 -10.99012 -10.95188 -9.73647 -9.65764 -9.34399 -8.03046 -5.37373 0.01342 0.66343 0.87424 1.39194 1.40259 1.43798 1.47243 1.74436 2.00218 2.40996 2.47392 3.25171 3.34767 3.45825 3.53710 3.64735 3.82946 3.90816 4.01898 4.13773 4.20152 4.22780 4.29621 4.31911 4.37215 4.45258 4.54645 4.59415 4.68527 4.71680 4.86809 4.99300 5.06851 5.15497 5.30239 5.35363 5.43096 5.76827 6.06185 6.20609 6.33154 6.43649 6.74415 6.96197 7.05525 7.80605 7.97324 9.17673 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.002466 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.073741 B =11350.181909 C =11556.590664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.562 5.562 3 C 0.537 3.463 4 O -0.560 6.560 5 C -0.313 4.313 6 C 0.204 3.796 7 N -0.518 5.518 8 C 0.101 3.899 9 C 0.507 3.493 10 O -0.584 6.584 11 N -0.606 5.606 12 C 0.101 3.899 13 C -0.149 4.149 14 C 0.168 3.832 15 H 0.071 0.929 16 N -0.745 5.745 17 C -0.226 4.226 18 H 0.067 0.933 19 C -0.059 4.059 20 N -0.980 5.980 21 Si 0.947 3.053 22 H -0.277 1.277 23 H -0.300 1.300 24 H -0.257 1.257 25 C 0.104 3.896 26 C 0.691 3.309 27 O -0.566 6.566 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.194 0.806 32 H 0.232 0.768 33 H 0.142 0.858 34 H 0.192 0.808 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.365 0.635 40 H 0.257 0.743 41 H 0.064 0.936 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 16.790 -19.328 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.305 5.305 3 C 0.337 3.663 4 O -0.439 6.439 5 C -0.338 4.338 6 C 0.081 3.919 7 N -0.236 5.236 8 C -0.023 4.023 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.340 5.340 12 C -0.021 4.021 13 C -0.189 4.189 14 C 0.059 3.941 15 H 0.089 0.911 16 N -0.388 5.388 17 C -0.357 4.357 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.630 5.630 21 Si 0.775 3.225 22 H -0.204 1.204 23 H -0.227 1.227 24 H -0.182 1.182 25 C -0.021 4.021 26 C 0.394 3.606 27 O -0.441 6.441 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.211 0.789 32 H 0.249 0.751 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.822 17.057 -18.878 27.648 hybrid contribution -0.888 -0.798 1.437 1.868 sum -11.710 16.260 -17.441 26.565 Atomic orbital electron populations 1.21984 0.74993 1.05293 1.04291 1.46487 1.11149 1.06453 1.66404 1.18053 0.90453 0.82304 0.75532 1.90841 1.71664 1.30321 1.51122 1.22070 0.91131 1.00952 1.19686 1.23114 1.00977 0.82431 0.85382 1.44487 1.04251 1.09159 1.65699 1.22055 1.02675 0.84292 0.93285 1.21132 0.76953 0.79747 0.92608 1.90758 1.52461 1.55266 1.47954 1.48414 1.56598 1.20288 1.08657 1.22414 0.99837 0.89520 0.90307 1.23224 1.01422 0.97582 0.96707 1.21454 0.95745 0.88322 0.88589 0.91102 1.42625 1.06423 1.44714 1.45007 1.19001 0.87334 1.13770 1.15607 0.91490 1.25414 0.99349 0.99738 1.00627 1.69857 1.26094 1.30804 1.36258 0.85530 0.80404 0.78774 0.77762 1.20350 1.22666 1.18173 1.22307 0.97678 0.96841 0.85271 1.16032 0.82404 0.83939 0.78187 1.91001 1.66778 1.31028 1.55314 0.87919 0.89145 0.90681 0.78877 0.75119 0.84017 0.79125 0.88741 0.86853 0.89471 0.91602 0.80199 0.93362 0.91770 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.00 127.77 1.28 2.70 16 2 N -0.56 -12.41 2.96 -806.42 -2.39 -14.80 16 3 C 0.54 11.91 7.45 85.05 0.63 12.54 16 4 O -0.56 -15.86 16.44 -4.61 -0.08 -15.93 16 5 C -0.31 -4.19 10.00 22.35 0.22 -3.97 16 6 C 0.20 1.76 10.38 83.17 0.86 2.62 16 7 N -0.52 -7.54 2.10 -660.92 -1.39 -8.93 16 8 C 0.10 1.01 5.01 85.63 0.43 1.44 16 9 C 0.51 10.70 7.92 87.66 0.69 11.40 16 10 O -0.58 -18.39 16.69 -3.03 -0.05 -18.44 16 11 N -0.61 -12.73 3.33 -811.73 -2.70 -15.43 16 12 C 0.10 1.41 6.49 86.73 0.56 1.97 16 13 C -0.15 -3.49 6.64 31.79 0.21 -3.28 16 14 C 0.17 5.34 3.72 46.39 0.17 5.51 16 15 H 0.07 2.33 8.09 -2.38 -0.02 2.31 16 16 N -0.75 -31.59 5.05 -316.34 -1.60 -33.19 16 17 C -0.23 -11.92 10.44 84.04 0.88 -11.04 16 18 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 19 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 20 N -0.98 -60.43 13.97 21.65 0.30 -60.12 16 21 Si 0.95 44.01 27.74 68.60 1.90 45.92 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 24 H -0.26 -10.93 6.52 99.48 0.65 -10.28 16 25 C 0.10 2.99 6.55 86.86 0.57 3.56 16 26 C 0.69 15.36 8.12 179.19 1.45 16.82 16 27 O -0.57 -15.57 15.79 -4.01 -0.06 -15.64 16 28 H 0.10 1.88 6.90 -2.39 -0.02 1.87 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.23 -0.54 8.06 -2.91 -0.02 -0.56 16 33 H 0.14 1.31 7.37 -2.39 -0.02 1.29 16 34 H 0.19 -0.41 8.03 -2.39 -0.02 -0.43 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.36 15.29 5.62 -92.71 -0.52 14.77 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 42 H 0.06 1.76 8.01 -2.39 -0.02 1.74 16 Total: -1.00 -86.80 356.40 2.85 -83.95 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.47 Total: 15.24 kcal Atomic # 6 Polarization: 28.94 SS G_CDS: 8.43 Total: 37.38 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -7.77 Total: -132.47 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.19 Total: -50.01 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.92 kcal Total: -86.80 2.85 -83.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018938192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.910 kcal (2) G-P(sol) polarization free energy of solvation -86.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds