Wall clock time and date at job start Fri Apr 10 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35661 * 119.95498 * 2 1 4 4 O 1.34679 * 119.11028 * 359.97438 * 3 2 1 5 5 N 1.31842 * 121.77584 * 179.72200 * 3 2 1 6 6 C 1.32572 * 121.61288 * 0.25109 * 5 3 2 7 7 C 1.39431 * 119.70060 * 0.02562 * 6 5 3 8 8 C 1.46895 * 120.82113 * 179.97438 * 7 6 5 9 9 O 1.21674 * 119.99779 * 173.98992 * 8 7 6 10 10 N 1.34779 * 119.99982 * 353.98794 * 8 7 6 11 11 C 1.46497 * 119.99867 * 185.12832 * 10 8 7 12 12 C 1.53002 * 109.47365 * 184.54063 * 11 10 8 13 13 H 1.09007 * 109.86776 * 55.68271 * 12 11 10 14 14 C 1.54319 * 109.88365 * 294.51592 * 12 11 10 15 15 C 1.55152 * 102.94093 * 218.38578 * 14 12 11 16 16 C 1.54911 * 101.58352 * 35.50173 * 15 14 12 17 17 N 1.47012 * 109.88483 * 176.69881 * 12 11 10 18 18 C 1.36936 * 125.65398 * 298.39594 * 17 12 11 19 19 H 1.07999 * 119.99769 * 347.43309 * 18 17 12 20 20 C 1.38808 * 120.00514 * 167.42339 * 18 17 12 21 21 N 1.31618 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00330 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 90.00300 * 22 20 18 24 24 H 1.48505 * 109.46968 * 210.00274 * 22 20 18 25 25 H 1.48497 * 109.46934 * 330.00331 * 22 20 18 26 26 C 1.35020 * 119.95498 * 180.23643 * 2 1 3 27 27 O 1.21826 * 120.76755 * 0.02562 * 26 2 1 28 28 H 1.09003 * 109.47075 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47309 * 119.99937 * 1 2 3 30 30 H 1.09004 * 109.47263 * 240.00087 * 1 2 3 31 31 H 0.96703 * 117.00173 * 179.72456 * 4 3 2 32 32 H 1.07994 * 120.15009 * 179.97438 * 6 5 3 33 33 H 0.96994 * 120.00010 * 5.13530 * 10 8 7 34 34 H 1.08994 * 109.47493 * 304.54837 * 11 10 8 35 35 H 1.09003 * 109.46899 * 64.54748 * 11 10 8 36 36 H 1.09007 * 110.71931 * 336.74552 * 14 12 11 37 37 H 1.09000 * 110.72758 * 100.01842 * 14 12 11 38 38 H 1.09003 * 111.00690 * 277.42554 * 15 14 12 39 39 H 1.09008 * 111.00697 * 153.57216 * 15 14 12 40 40 H 1.09007 * 110.36756 * 204.15941 * 16 15 14 41 41 H 1.08998 * 110.46243 * 81.87587 * 16 15 14 42 42 H 0.97001 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1424 1.1754 0.0000 4 8 1.4500 2.3306 -0.0005 5 7 3.4601 1.2173 0.0054 6 6 4.1905 0.1109 0.0062 7 6 3.5605 -1.1329 0.0007 8 6 4.3457 -2.3743 0.0009 9 8 3.7848 -3.4489 0.1064 10 7 5.6875 -2.3230 -0.1158 11 6 6.4607 -3.5622 -0.2287 12 6 7.9548 -3.2323 -0.2342 13 1 8.2101 -2.6558 0.6550 14 6 8.3106 -2.4303 -1.5036 15 6 9.6979 -3.0020 -1.8984 16 6 9.5438 -4.4922 -1.5040 17 7 8.7409 -4.4742 -0.2677 18 6 8.7288 -5.4526 0.6903 19 1 8.2696 -5.2636 1.6493 20 6 9.3066 -6.6873 0.4288 21 7 9.8665 -6.9176 -0.7399 22 14 9.2894 -8.0222 1.7353 23 1 8.0614 -8.8438 1.5874 24 1 10.4860 -8.8871 1.5751 25 1 9.3074 -7.3968 3.0821 26 6 2.1392 -1.1698 -0.0048 27 8 1.5434 -2.2325 -0.0097 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 -0.3634 -0.5138 0.8900 31 1 1.9634 3.1501 0.0036 32 1 5.2687 0.1728 0.0103 33 1 6.1411 -1.4658 -0.1250 34 1 6.2347 -4.2100 0.6182 35 1 6.1978 -4.0713 -1.1560 36 1 7.5801 -2.6120 -2.2920 37 1 8.3816 -1.3658 -1.2801 38 1 10.4939 -2.5265 -1.3254 39 1 9.8733 -2.8975 -2.9692 40 1 10.5207 -4.9376 -1.3154 41 1 9.0219 -5.0417 -2.2874 42 1 10.2706 -7.7802 -0.9227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028069861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:13 Heat of formation + Delta-G solvation = -63.284826 kcal Electronic energy + Delta-G solvation = -27154.556600 eV Core-core repulsion = 23135.470338 eV Total energy + Delta-G solvation = -4019.086262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.07924 -40.72069 -39.80462 -39.09211 -37.99851 -36.32003 -35.68754 -34.38268 -32.25607 -31.30949 -30.08574 -29.04081 -26.83622 -26.30383 -25.11734 -24.86479 -22.24923 -21.77804 -21.17117 -20.33388 -19.87723 -19.32816 -18.52198 -18.02787 -17.27679 -17.16970 -16.95168 -16.54478 -16.20389 -15.92416 -15.64187 -15.59776 -15.41612 -14.73827 -14.57640 -14.50003 -14.24197 -13.92946 -13.61978 -13.52454 -13.39225 -13.08808 -12.97309 -12.84239 -12.69641 -12.07725 -12.00142 -11.81895 -11.64302 -11.42484 -11.40765 -11.36852 -11.32721 -10.83394 -10.68279 -10.13336 -9.55507 -8.85170 -7.86987 -5.23828 -0.74275 0.64921 0.65375 1.42791 1.46687 1.53358 1.69720 2.04493 2.35498 2.51246 2.61558 3.05038 3.29320 3.32042 3.72082 3.87538 3.99329 4.00954 4.04482 4.27200 4.28746 4.36247 4.46626 4.49123 4.60864 4.67515 4.78637 4.85640 5.01706 5.05485 5.19751 5.24701 5.29130 5.41246 5.50393 5.61019 5.71432 5.82287 6.00147 6.25383 6.55928 6.60216 6.67147 7.10999 7.36676 7.78584 8.42837 9.23030 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002862 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.401105 B = 9780.103498 C =10727.385688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.514 5.514 3 C 0.625 3.375 4 O -0.432 6.432 5 N -0.583 5.583 6 C 0.282 3.718 7 C -0.381 4.381 8 C 0.569 3.431 9 O -0.587 6.587 10 N -0.701 5.701 11 C 0.131 3.869 12 C 0.148 3.852 13 H 0.057 0.943 14 C -0.114 4.114 15 C -0.132 4.132 16 C 0.170 3.830 17 N -0.612 5.612 18 C -0.237 4.237 19 H 0.075 0.925 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.969 3.031 23 H -0.294 1.294 24 H -0.289 1.289 25 H -0.267 1.267 26 C 0.544 3.456 27 O -0.541 6.541 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.468 0.532 32 H 0.215 0.785 33 H 0.414 0.586 34 H 0.029 0.971 35 H 0.031 0.969 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.040 0.960 41 H -0.013 1.013 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 29.873 -0.628 33.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.241 5.241 3 C 0.327 3.673 4 O -0.233 6.233 5 N -0.324 5.324 6 C 0.133 3.867 7 C -0.393 4.393 8 C 0.358 3.642 9 O -0.468 6.468 10 N -0.356 5.356 11 C 0.005 3.995 12 C 0.041 3.959 13 H 0.074 0.926 14 C -0.151 4.151 15 C -0.170 4.170 16 C 0.045 3.955 17 N -0.336 5.336 18 C -0.366 4.366 19 H 0.093 0.907 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.798 3.202 23 H -0.222 1.222 24 H -0.216 1.216 25 H -0.192 1.192 26 C 0.343 3.657 27 O -0.418 6.418 28 H 0.156 0.844 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.336 0.664 32 H 0.232 0.768 33 H 0.253 0.747 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.006 0.994 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.899 28.668 -0.537 32.313 hybrid contribution 0.002 -1.828 0.531 1.904 sum -14.897 26.840 -0.007 30.696 Atomic orbital electron populations 1.22453 0.74161 1.07202 1.04865 1.46482 1.12178 1.04874 1.60570 1.20462 0.84924 0.82052 0.79816 1.84179 1.39062 1.14564 1.85452 1.68601 1.00711 1.30486 1.32641 1.23506 1.01697 0.83889 0.77630 1.21180 0.92676 0.95787 1.29665 1.17774 0.82313 0.88181 0.75939 1.90847 1.71694 1.32751 1.51514 1.45525 1.05174 1.10132 1.74742 1.21692 0.92949 0.85855 0.99036 1.21384 0.87398 0.88451 0.98655 0.92573 1.22652 0.96644 1.00317 0.95533 1.22859 0.97526 0.95383 1.01243 1.21339 0.94612 0.93302 0.86252 1.44783 1.47247 1.19713 1.21889 1.19303 1.32071 0.91595 0.93655 0.90716 1.25628 1.01570 0.99364 0.98924 1.70136 1.43384 1.22889 1.23008 0.85214 0.76535 0.79326 0.79126 1.22182 1.21551 1.19195 1.17008 0.88255 0.82317 0.78097 1.90988 1.70749 1.28759 1.51284 0.84430 0.89900 0.89947 0.66411 0.76832 0.74716 0.95260 0.95008 0.91551 0.86712 0.90886 0.89887 0.94192 0.99445 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.10 127.77 1.29 1.90 16 2 N -0.51 -8.85 2.99 -789.44 -2.36 -11.21 16 3 C 0.62 6.06 8.60 179.67 1.54 7.61 16 4 O -0.43 0.08 11.91 -79.44 -0.95 -0.87 16 5 N -0.58 -6.07 10.30 -311.75 -3.21 -9.28 16 6 C 0.28 4.06 10.76 84.87 0.91 4.98 16 7 C -0.38 -10.19 5.93 -19.74 -0.12 -10.31 16 8 C 0.57 20.78 7.73 86.51 0.67 21.45 16 9 O -0.59 -29.51 15.44 15.86 0.24 -29.26 16 10 N -0.70 -21.25 5.34 -466.87 -2.50 -23.74 16 11 C 0.13 5.36 5.10 86.38 0.44 5.80 16 12 C 0.15 5.67 3.24 45.34 0.15 5.82 16 13 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 14 C -0.11 -3.26 6.01 31.78 0.19 -3.07 16 15 C -0.13 -4.41 7.08 31.99 0.23 -4.18 16 16 C 0.17 8.31 5.45 86.85 0.47 8.79 16 17 N -0.61 -31.22 3.13 -668.26 -2.09 -33.31 16 18 C -0.24 -13.60 9.75 84.03 0.82 -12.78 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.06 -3.61 5.47 84.86 0.46 -3.15 16 21 N -0.95 -58.32 10.49 21.65 0.23 -58.09 16 22 Si 0.97 48.06 29.55 68.60 2.03 50.09 16 23 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 C 0.54 15.96 7.47 85.18 0.64 16.60 16 27 O -0.54 -21.95 15.51 15.37 0.24 -21.72 16 28 H 0.14 0.47 6.77 -2.39 -0.02 0.45 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.47 -4.83 9.08 -74.06 -0.67 -5.51 16 32 H 0.22 1.37 6.49 -2.91 -0.02 1.35 16 33 H 0.41 7.95 6.31 -92.71 -0.58 7.37 16 34 H 0.03 1.43 7.86 -2.39 -0.02 1.41 16 35 H 0.03 1.47 8.06 -2.39 -0.02 1.46 16 36 H 0.07 1.92 7.80 -2.38 -0.02 1.90 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.04 2.21 6.78 -2.38 -0.02 2.20 16 41 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -97.54 350.94 -0.84 -98.38 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -0.17 Total: -0.43 kcal Atomic # 6 Polarization: 31.75 SS G_CDS: 7.70 Total: 39.45 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -9.93 Total: -135.64 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.46 Total: -51.84 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -97.54 -0.84 -98.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028069861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.098 kcal (2) G-P(sol) polarization free energy of solvation -97.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds