Wall clock time and date at job start Fri Apr 10 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 119.70771 * 2 1 4 4 C 1.38327 * 119.02273 * 180.02562 * 3 2 1 5 5 C 1.47302 * 120.73682 * 180.02562 * 4 3 2 6 6 O 1.21622 * 120.00078 * 174.69353 * 5 4 3 7 7 N 1.34775 * 120.00103 * 354.68876 * 5 4 3 8 8 C 1.46501 * 120.00311 * 185.10410 * 7 5 4 9 9 C 1.53000 * 109.47562 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.88674 * 54.29609 * 9 8 7 11 11 C 1.55158 * 111.00620 * 178.18094 * 9 8 7 12 12 C 1.54320 * 102.94217 * 153.57347 * 11 9 8 13 13 N 1.47025 * 107.27265 * 337.80491 * 12 11 9 14 14 C 1.36934 * 125.65147 * 178.97030 * 13 12 11 15 15 H 1.07993 * 120.00596 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99700 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99923 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99910 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47164 * 90.00003 * 18 16 14 20 20 H 1.48501 * 109.47118 * 209.99632 * 18 16 14 21 21 H 1.48498 * 109.47377 * 329.99999 * 18 16 14 22 22 C 1.47471 * 108.72302 * 358.97826 * 13 12 11 23 23 C 1.42095 * 118.52450 * 359.97438 * 4 3 2 24 24 O 1.35011 * 120.33412 * 180.27211 * 23 4 3 25 25 N 1.32215 * 119.33256 * 359.97438 * 23 4 3 26 26 C 1.33324 * 120.93320 * 0.02562 * 25 23 4 27 27 O 1.21904 * 119.20026 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47207 * 300.02846 * 1 2 3 30 30 H 1.09008 * 109.46849 * 60.02134 * 1 2 3 31 31 H 1.08003 * 120.48992 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00070 * 5.10740 * 7 5 4 33 33 H 1.08998 * 109.47301 * 300.00564 * 8 7 5 34 34 H 1.09004 * 109.46760 * 60.00312 * 8 7 5 35 35 H 1.08994 * 110.72015 * 271.94182 * 11 9 8 36 36 H 1.09004 * 110.71589 * 35.03671 * 11 9 8 37 37 H 1.09002 * 109.88410 * 97.22361 * 12 11 9 38 38 H 1.08995 * 109.88639 * 218.23413 * 12 11 9 39 39 H 0.97003 * 119.99675 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.34706 * 265.25186 * 22 13 12 41 41 H 1.08996 * 110.40841 * 142.91208 * 22 13 12 42 42 H 0.96697 * 114.00484 * 179.72329 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1721 0.0000 4 6 3.5169 1.1556 -0.0005 5 6 4.2848 2.4126 0.0000 6 8 5.4969 2.3847 0.0969 7 7 3.6444 3.5936 -0.1070 8 6 4.4126 4.8360 -0.2191 9 6 3.4518 6.0219 -0.3260 10 1 2.7453 6.0257 0.5040 11 6 4.2292 7.3626 -0.4008 12 6 3.2538 8.2858 -1.1608 13 7 2.3366 7.4223 -1.9190 14 6 1.3056 7.8533 -2.7104 15 1 0.6864 7.1363 -3.2287 16 6 1.0564 9.2122 -2.8465 17 7 1.8108 10.0861 -2.2145 18 14 -0.3496 9.8002 -3.9267 19 1 -1.5873 9.9076 -3.1132 20 1 -0.0141 11.1305 -4.4952 21 1 -0.5651 8.8303 -5.0303 22 6 2.7104 6.0149 -1.6862 23 6 4.1805 -0.1009 -0.0005 24 8 5.5293 -0.1597 0.0045 25 7 3.4637 -1.2119 0.0005 26 6 2.1312 -1.1678 0.0011 27 8 1.5016 -2.2117 0.0025 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5143 0.8897 30 1 -0.3633 0.5135 -0.8903 31 1 1.5970 2.1093 -0.0004 32 1 2.6748 3.6210 -0.1098 33 1 5.0404 4.9559 0.6638 34 1 5.0409 4.7956 -1.1089 35 1 4.4272 7.7498 0.5986 36 1 5.1590 7.2387 -0.9561 37 1 2.6905 8.8934 -0.4526 38 1 3.8085 8.9303 -1.8427 39 1 1.6364 11.0356 -2.3094 40 1 3.3724 5.6627 -2.4772 41 1 1.8196 5.3894 -1.6294 42 1 5.8839 -1.0593 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028979612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:30 Heat of formation + Delta-G solvation = -32.091216 kcal Electronic energy + Delta-G solvation = -26873.909643 eV Core-core repulsion = 22856.176037 eV Total energy + Delta-G solvation = -4017.733606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.32138 -39.86993 -38.89195 -37.67724 -37.18362 -35.06267 -34.77253 -32.79472 -31.82522 -29.79296 -28.38654 -28.04236 -25.75149 -25.45234 -24.29614 -23.23584 -21.20433 -20.20895 -20.07088 -19.99370 -18.66818 -18.25815 -17.10792 -16.90756 -16.59270 -16.04744 -15.73148 -15.36992 -15.10166 -14.83865 -14.72084 -14.47001 -14.09973 -13.85271 -13.77684 -13.47488 -13.14829 -13.14096 -12.43317 -12.14521 -11.96791 -11.81135 -11.47762 -11.32898 -10.97545 -10.86062 -10.57619 -10.52542 -10.43597 -10.23402 -10.10529 -9.96671 -9.84676 -9.72942 -9.22460 -8.97911 -8.67105 -6.91090 -5.78493 -3.12479 0.04808 0.84816 1.83747 2.72159 2.80133 2.95653 3.33905 3.39066 3.39249 3.41526 3.60216 3.84019 4.29088 4.42435 4.56935 4.66256 4.67210 4.80551 5.02135 5.11258 5.14716 5.32786 5.40554 5.46911 5.61073 5.74307 5.80196 5.96482 5.97779 6.26255 6.28988 6.38114 6.46256 6.58591 6.75237 6.81449 7.25765 7.35815 7.48552 7.56335 7.67209 7.76063 8.07301 8.18803 9.14626 9.75132 10.40716 11.33092 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.002790 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.343400 B =10034.934627 C =11436.650852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.518 5.518 3 C 0.245 3.755 4 C -0.295 4.295 5 C 0.576 3.424 6 O -0.516 6.516 7 N -0.725 5.725 8 C 0.135 3.865 9 C -0.119 4.119 10 H 0.080 0.920 11 C -0.135 4.135 12 C 0.177 3.823 13 N -0.606 5.606 14 C -0.232 4.232 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.142 3.858 23 C 0.496 3.504 24 O -0.411 6.411 25 N -0.616 5.616 26 C 0.655 3.345 27 O -0.527 6.527 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.190 0.810 32 H 0.395 0.605 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.253 0.747 40 H 0.020 0.980 41 H 0.033 0.967 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -16.605 7.182 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.231 5.231 3 C 0.104 3.896 4 C -0.308 4.308 5 C 0.361 3.639 6 O -0.391 6.391 7 N -0.377 5.377 8 C 0.012 3.988 9 C -0.139 4.139 10 H 0.098 0.902 11 C -0.174 4.174 12 C 0.052 3.948 13 N -0.333 5.333 14 C -0.360 4.360 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.016 3.984 23 C 0.294 3.706 24 O -0.202 6.202 25 N -0.375 5.375 26 C 0.357 3.643 27 O -0.401 6.401 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.206 0.794 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.052 0.948 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.563 -17.379 7.153 18.858 hybrid contribution -1.446 0.672 -0.607 1.706 sum 0.117 -16.707 6.545 17.944 Atomic orbital electron populations 1.22441 0.75277 1.07307 1.04303 1.46238 1.11198 1.07086 1.58556 1.22880 0.91791 0.91512 0.83461 1.19784 0.91768 0.94353 1.24866 1.17220 0.87186 0.82172 0.77289 1.90865 1.12906 1.86650 1.48725 1.45928 1.10173 1.06383 1.75205 1.21443 0.93956 0.81217 1.02219 1.22637 0.97487 0.93902 0.99846 0.90180 1.22855 0.98985 0.94917 1.00595 1.21145 0.89398 0.90638 0.93602 1.44484 1.34595 0.99274 1.54919 1.19029 1.05374 0.91055 1.20524 0.90510 1.24811 0.99372 0.95827 1.00368 1.69961 1.40059 1.00880 1.45884 0.86130 0.81628 0.78122 0.79920 1.21600 1.21635 1.20707 1.21586 0.95772 0.88445 0.92625 1.20197 0.84932 0.88077 0.77438 1.85280 1.14000 1.36304 1.84652 1.69731 1.05475 1.27263 1.35002 1.17457 0.84769 0.83052 0.79068 1.90990 1.65842 1.29984 1.53284 0.87114 0.89272 0.89135 0.79355 0.77073 0.91259 0.91059 0.91919 0.92112 0.93550 0.93882 0.93690 0.96234 0.94838 0.73070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 10.57 59.85 0.63 0.85 16 2 N -0.52 -4.09 2.96 -128.87 -0.38 -4.47 16 3 C 0.24 1.54 9.97 -16.15 -0.16 1.38 16 4 C -0.29 -2.80 5.90 -104.70 -0.62 -3.42 16 5 C 0.58 6.69 7.75 -12.58 -0.10 6.59 16 6 O -0.52 -7.98 15.32 -15.91 -0.24 -8.22 16 7 N -0.72 -7.27 5.40 -61.42 -0.33 -7.60 16 8 C 0.13 1.65 5.13 -4.04 -0.02 1.63 16 9 C -0.12 -1.71 3.07 -88.47 -0.27 -1.98 16 10 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.13 -2.24 6.42 -24.90 -0.16 -2.40 16 12 C 0.18 4.02 5.37 -3.06 -0.02 4.00 16 13 N -0.61 -14.40 3.40 -170.04 -0.58 -14.98 16 14 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 15 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.13 10.31 55.49 0.57 -25.55 16 18 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.14 2.54 6.56 -2.50 -0.02 2.52 16 23 C 0.50 5.31 7.93 -15.91 -0.13 5.19 16 24 O -0.41 -4.05 11.78 -37.91 -0.45 -4.50 16 25 N -0.62 -7.53 10.38 -16.47 -0.17 -7.70 16 26 C 0.65 8.08 8.32 -88.50 -0.74 7.34 16 27 O -0.53 -8.12 16.42 5.01 0.08 -8.04 16 28 H 0.11 0.69 6.82 -51.93 -0.35 0.34 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.24 8.14 -51.92 -0.42 -0.19 16 31 H 0.19 0.40 6.48 -52.48 -0.34 0.05 16 32 H 0.39 2.85 6.54 -40.82 -0.27 2.58 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.96 8.04 -51.93 -0.42 0.55 16 37 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 38 H 0.04 1.10 7.50 -51.93 -0.39 0.72 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.41 2.15 8.98 45.56 0.41 2.56 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -37.84 352.31 -7.71 -45.55 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.66 Total: -1.15 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -1.84 Total: 15.15 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.89 Total: -60.30 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.61 Total: -20.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.84 -7.71 -45.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028979612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.460 kcal (2) G-P(sol) polarization free energy of solvation -37.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds