Wall clock time and date at job start Fri Apr 10 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34763 * 124.18137 * 2 1 4 4 O 1.21234 * 127.15762 * 0.07763 * 3 2 1 5 5 C 1.51585 * 105.68762 * 180.02562 * 3 2 1 6 6 N 1.47314 * 103.59208 * 0.02562 * 5 3 2 7 7 C 1.46499 * 126.69140 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.46963 * 90.00161 * 7 6 5 9 9 O 1.21283 * 120.00294 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.47871 * 126.94247 * 359.97438 * 10 8 7 12 12 C 1.56019 * 105.10436 * 182.00189 * 11 10 8 13 13 H 1.09002 * 116.24915 * 158.83782 * 12 11 10 14 14 C 1.57086 * 99.60505 * 32.81049 * 12 11 10 15 15 C 1.49292 * 126.94738 * 180.02562 * 10 8 7 16 16 H 1.09002 * 116.15114 * 16.70644 * 15 10 8 17 17 C 1.56008 * 104.09261 * 246.69898 * 15 10 8 18 18 N 1.49074 * 105.20962 * 288.09667 * 17 15 10 19 19 C 1.36929 * 127.54713 * 182.01249 * 18 17 15 20 20 H 1.08001 * 120.00040 * 181.21906 * 19 18 17 21 21 C 1.38816 * 119.99943 * 1.21678 * 19 18 17 22 22 N 1.31618 * 119.99826 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47032 * 90.00053 * 23 21 19 25 25 H 1.48498 * 109.47399 * 210.00303 * 23 21 19 26 26 H 1.48500 * 109.47297 * 330.00040 * 23 21 19 27 27 C 1.33794 * 124.17470 * 180.31145 * 2 1 3 28 28 O 1.21546 * 123.77356 * 359.97159 * 27 2 1 29 29 H 1.08997 * 109.46597 * 359.96854 * 1 2 3 30 30 H 1.09000 * 109.47194 * 119.97338 * 1 2 3 31 31 H 1.09000 * 109.46773 * 239.97530 * 1 2 3 32 32 H 1.09000 * 110.59944 * 241.47495 * 5 3 2 33 33 H 1.08992 * 110.72665 * 118.59280 * 5 3 2 34 34 H 1.09002 * 109.46769 * 330.00761 * 7 6 5 35 35 H 1.08994 * 109.47488 * 210.00556 * 7 6 5 36 36 H 1.09004 * 110.31012 * 63.09539 * 11 10 8 37 37 H 1.09001 * 110.31397 * 300.91295 * 11 10 8 38 38 H 1.08994 * 112.37121 * 64.27209 * 14 12 11 39 39 H 1.09002 * 112.36511 * 191.71430 * 14 12 11 40 40 H 1.09000 * 110.32155 * 47.67074 * 17 15 10 41 41 H 1.09003 * 110.31912 * 169.86153 * 17 15 10 42 42 H 0.97006 * 119.99328 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1148 0.0000 4 8 1.8342 2.2634 0.0013 5 6 3.6597 0.6340 -0.0007 6 7 3.5338 -0.8337 -0.0016 7 6 4.6295 -1.8063 -0.0030 8 6 5.0060 -2.1407 1.4173 9 8 4.4169 -1.6186 2.3399 10 7 5.9975 -3.0201 1.6623 11 6 6.8119 -3.7428 0.6618 12 6 7.7631 -4.6566 1.4951 13 1 8.1868 -5.5146 0.9732 14 6 6.8230 -4.9713 2.7137 15 6 6.4948 -3.4623 2.9987 16 1 5.8404 -3.2587 3.8463 17 6 7.9444 -2.8904 3.0729 18 7 8.7411 -3.7197 2.1243 19 6 10.0823 -3.6319 1.8627 20 1 10.5338 -4.2864 1.1318 21 6 10.8615 -2.7017 2.5368 22 7 10.3113 -1.9045 3.4279 23 14 12.6910 -2.5816 2.1794 24 1 12.9180 -1.6071 1.0821 25 1 13.4051 -2.1280 3.3998 26 1 13.2044 -3.9141 1.7721 27 6 2.2166 -1.1069 -0.0060 28 8 1.7602 -2.2334 -0.0116 29 1 -0.3632 1.0277 0.0006 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3633 -0.5142 0.8898 32 1 4.1783 0.9742 0.8957 33 1 4.1799 0.9745 -0.8958 34 1 5.4917 -1.3814 -0.5171 35 1 4.3102 -2.7126 -0.5174 36 1 7.3911 -3.0380 0.0650 37 1 6.1725 -4.3481 0.0192 38 1 5.9401 -5.5392 2.4206 39 1 7.3572 -5.4427 3.5387 40 1 7.9536 -1.8424 2.7735 41 1 8.3434 -3.0002 4.0813 42 1 10.8560 -1.2548 3.8992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032728526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:40 Heat of formation + Delta-G solvation = 3.547251 kcal Electronic energy + Delta-G solvation = -27881.569979 eV Core-core repulsion = 23865.381773 eV Total energy + Delta-G solvation = -4016.188206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45423 -40.12453 -38.83199 -37.93877 -36.22485 -35.26202 -33.68877 -31.83240 -30.41261 -29.06781 -28.58320 -27.33574 -26.60746 -25.26008 -23.61752 -22.69855 -21.14286 -20.19592 -19.92433 -18.62240 -17.81518 -17.60082 -17.03276 -16.83474 -16.35423 -15.95630 -15.74464 -15.14110 -14.91596 -14.62861 -14.38228 -14.17975 -14.10196 -13.78828 -13.40363 -13.21973 -12.92426 -12.85516 -12.27645 -12.24099 -11.95660 -11.74241 -11.36167 -11.09566 -11.08393 -10.91718 -10.85857 -10.66365 -10.43550 -10.34189 -10.14622 -10.04849 -9.99935 -9.68530 -9.02984 -8.76594 -8.12602 -7.00747 -5.83911 -3.18286 1.43326 1.81838 2.65969 2.83080 2.85685 3.32418 3.36315 3.37783 3.40418 3.84389 4.35456 4.45917 4.60644 4.84223 4.88909 5.02698 5.06200 5.07262 5.10283 5.13433 5.28772 5.30066 5.36601 5.49454 5.56426 5.59520 5.69764 5.82987 6.03056 6.12208 6.20655 6.34755 6.39700 6.52712 6.60621 6.90013 7.12814 7.33515 7.37372 7.62818 7.87899 7.95914 8.00833 8.41496 9.01206 9.63754 10.33296 11.28842 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.003135 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.434810 B = 8930.344661 C = 9627.095137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.580 5.580 3 C 0.528 3.472 4 O -0.475 6.475 5 C 0.064 3.936 6 N -0.607 5.607 7 C 0.139 3.861 8 C 0.508 3.492 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.078 3.922 12 C 0.141 3.859 13 H 0.107 0.893 14 C -0.152 4.152 15 C 0.100 3.900 16 H 0.113 0.887 17 C 0.173 3.827 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.082 0.918 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.706 3.294 28 O -0.540 6.540 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 0.512 -9.062 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.326 5.326 3 C 0.316 3.684 4 O -0.346 6.346 5 C -0.062 4.062 6 N -0.344 5.344 7 C 0.014 3.986 8 C 0.294 3.706 9 O -0.424 6.424 10 N -0.338 5.338 11 C -0.048 4.048 12 C 0.032 3.968 13 H 0.125 0.875 14 C -0.192 4.192 15 C -0.002 4.002 16 H 0.131 0.869 17 C 0.049 3.951 18 N -0.322 5.322 19 C -0.359 4.359 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.408 3.592 28 O -0.414 6.414 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.364 0.935 -8.503 16.718 hybrid contribution 1.049 0.250 -0.124 1.086 sum -13.315 1.186 -8.628 15.910 Atomic orbital electron populations 1.21805 0.75075 1.04379 1.03864 1.46226 1.09594 1.08124 1.68638 1.20857 0.88902 0.84667 0.74021 1.90808 1.79188 1.17877 1.46708 1.22552 0.95751 0.80817 1.07089 1.46982 1.04757 1.06244 1.76426 1.21146 0.88750 0.93100 0.95645 1.20524 0.79394 0.79279 0.91406 1.90686 1.53181 1.52592 1.45986 1.49240 1.33203 1.41725 1.09652 1.23384 0.93463 0.96144 0.91763 1.23155 0.88850 0.92523 0.92291 0.87548 1.24175 0.99322 0.95195 1.00482 1.24337 0.96525 0.94308 0.85069 0.86882 1.22100 0.84062 0.94034 0.94929 1.45529 1.03482 1.37653 1.45501 1.19036 0.81508 1.16227 1.19152 0.90061 1.24820 0.98272 0.98406 0.98741 1.69903 1.34439 1.23941 1.28269 0.86117 0.84693 0.77697 0.77191 1.21613 1.21684 1.20617 1.15734 0.81701 0.84151 0.77566 1.90975 1.75165 1.20320 1.54903 0.88852 0.90413 0.90361 0.85432 0.85661 0.86386 0.86457 0.90840 0.92399 0.91588 0.89670 0.93583 0.92338 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.76 59.85 0.64 1.43 16 2 N -0.58 -6.78 3.00 -128.16 -0.39 -7.17 16 3 C 0.53 6.00 8.32 -10.56 -0.09 5.91 16 4 O -0.48 -6.33 17.51 5.60 0.10 -6.23 16 5 C 0.06 0.62 7.66 -4.31 -0.03 0.59 16 6 N -0.61 -7.44 2.51 -181.40 -0.45 -7.90 16 7 C 0.14 1.65 5.91 -5.20 -0.03 1.62 16 8 C 0.51 8.42 7.96 -10.99 -0.09 8.33 16 9 O -0.55 -11.01 16.78 5.55 0.09 -10.91 16 10 N -0.60 -10.15 2.95 -156.82 -0.46 -10.61 16 11 C 0.08 1.16 6.03 -1.67 -0.01 1.15 16 12 C 0.14 2.41 5.48 -62.52 -0.34 2.07 16 13 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 14 C -0.15 -2.45 6.80 -22.33 -0.15 -2.60 16 15 C 0.10 1.84 5.24 -62.59 -0.33 1.51 16 16 H 0.11 2.07 8.06 -51.93 -0.42 1.65 16 17 C 0.17 3.94 4.82 -1.01 0.00 3.93 16 18 N -0.60 -13.55 3.09 -155.33 -0.48 -14.02 16 19 C -0.23 -5.87 10.38 -15.06 -0.16 -6.02 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -25.84 10.66 55.49 0.59 -25.25 16 23 Si 0.91 20.95 29.55 -169.99 -5.02 15.93 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.71 9.82 8.31 -88.02 -0.73 9.08 16 28 O -0.54 -9.10 17.34 5.33 0.09 -9.01 16 29 H 0.09 0.69 7.64 -51.93 -0.40 0.30 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.12 1.27 8.02 -51.93 -0.42 0.85 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.20 7.77 -51.93 -0.40 0.79 16 41 H 0.06 1.49 7.44 -51.93 -0.39 1.10 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -34.85 354.37 -7.80 -42.65 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.80 Total: 0.41 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: -1.42 Total: 26.77 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.19 Total: -64.95 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: 0.28 Total: -26.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.85 -7.80 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032728526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.202 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds