Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47313 * 126.68997 * 2 1 4 4 C 1.51577 * 103.59168 * 179.97438 * 3 2 1 5 5 O 1.21238 * 127.15633 * 179.97438 * 4 3 2 6 6 N 1.34764 * 105.68906 * 359.97438 * 4 3 2 7 7 C 1.46505 * 124.18041 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47148 * 90.02373 * 7 6 4 9 9 O 1.21278 * 119.99742 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.47871 * 126.94500 * 359.97438 * 10 8 7 12 12 C 1.56019 * 105.10436 * 182.00607 * 11 10 8 13 13 H 1.09002 * 116.24915 * 158.83782 * 12 11 10 14 14 C 1.57086 * 99.60505 * 32.81049 * 12 11 10 15 15 C 1.49284 * 126.94390 * 180.02562 * 10 8 7 16 16 H 1.09001 * 116.79074 * 16.29887 * 15 10 8 17 17 C 1.56022 * 104.08997 * 246.69359 * 15 10 8 18 18 N 1.49071 * 105.20719 * 288.09353 * 17 15 10 19 19 C 1.36928 * 127.54602 * 182.03119 * 18 17 15 20 20 H 1.08001 * 120.00429 * 181.19338 * 19 18 17 21 21 C 1.38816 * 119.99872 * 1.19951 * 19 18 17 22 22 N 1.31617 * 120.00171 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99742 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47335 * 90.00310 * 23 21 19 25 25 H 1.48508 * 109.46953 * 209.99545 * 23 21 19 26 26 H 1.48492 * 109.47561 * 329.99631 * 23 21 19 27 27 C 1.33797 * 111.64404 * 0.22757 * 6 4 3 28 28 O 1.21539 * 123.77245 * 179.76741 * 27 6 4 29 29 H 1.08999 * 109.47138 * 90.00633 * 1 2 3 30 30 H 1.09002 * 109.46993 * 210.00176 * 1 2 3 31 31 H 1.08996 * 109.47335 * 330.00180 * 1 2 3 32 32 H 1.08996 * 110.59958 * 61.43396 * 3 2 1 33 33 H 1.09002 * 110.72511 * 298.54827 * 3 2 1 34 34 H 1.08998 * 109.46564 * 330.02028 * 7 6 4 35 35 H 1.09003 * 109.46729 * 210.02051 * 7 6 4 36 36 H 1.09004 * 110.31012 * 63.09957 * 11 10 8 37 37 H 1.09006 * 110.31821 * 300.91531 * 11 10 8 38 38 H 1.08994 * 112.37121 * 64.27209 * 14 12 11 39 39 H 1.09002 * 112.36511 * 191.71430 * 14 12 11 40 40 H 1.08993 * 110.31538 * 47.67090 * 17 15 10 41 41 H 1.09007 * 110.31428 * 169.86301 * 17 15 10 42 42 H 0.97004 * 120.00340 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3452 1.1813 0.0000 4 6 3.7395 0.5866 0.0007 5 8 4.7921 1.1881 0.0004 6 7 3.5657 -0.7498 0.0015 7 6 4.6614 -1.7222 0.0019 8 6 5.0371 -2.0553 1.4228 9 8 4.4480 -1.5315 2.3444 10 7 6.0285 -2.9344 1.6693 11 6 6.8436 -3.6580 0.6700 12 6 7.7942 -4.5709 1.5049 13 1 8.2182 -5.4295 0.9842 14 6 6.8533 -4.8844 2.7232 15 6 6.5249 -3.3751 3.0064 16 1 5.8811 -3.1697 3.8617 17 6 7.9745 -2.8031 3.0809 18 7 8.7717 -3.6334 2.1337 19 6 10.1131 -3.5462 1.8730 20 1 10.5653 -4.2018 1.1434 21 6 10.8920 -2.6154 2.5466 22 7 10.3411 -1.8162 3.4355 23 14 12.7219 -2.4960 2.1904 24 1 12.9500 -1.5228 1.0921 25 1 13.4351 -2.0408 3.4109 26 1 13.2354 -3.8291 1.7853 27 6 2.2688 -1.0788 -0.0034 28 8 1.8624 -2.2242 -0.0078 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 2.1831 1.7803 0.8961 33 1 2.1850 1.7817 -0.8955 34 1 5.5238 -1.2979 -0.5122 35 1 4.3423 -2.6292 -0.5117 36 1 7.4231 -2.9538 0.0730 37 1 6.2047 -4.2640 0.0276 38 1 5.9706 -5.4526 2.4301 39 1 7.3869 -5.3551 3.5490 40 1 7.9838 -1.7554 2.7803 41 1 8.3730 -2.9118 4.0897 42 1 10.8853 -1.1654 3.9060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032771711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = 5.427391 kcal Electronic energy + Delta-G solvation = -28133.921140 eV Core-core repulsion = 24117.814464 eV Total energy + Delta-G solvation = -4016.106677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.45534 -40.02620 -38.69362 -37.91501 -36.29160 -35.17700 -33.63497 -31.75631 -30.34779 -29.11827 -28.56051 -27.49891 -26.37541 -25.20545 -23.53903 -22.59082 -21.31801 -20.09557 -19.87132 -18.60766 -17.84006 -17.53147 -16.91077 -16.82932 -16.27482 -15.85833 -15.44066 -15.24366 -14.93280 -14.64900 -14.45670 -14.20536 -14.02000 -13.76348 -13.41552 -13.21148 -12.86915 -12.74078 -12.25424 -12.19912 -11.91469 -11.68845 -11.31234 -11.09182 -11.00558 -10.86795 -10.80288 -10.62521 -10.40399 -10.35109 -10.28593 -10.07891 -9.62929 -9.42234 -9.21184 -8.72664 -8.07763 -6.94695 -5.77557 -3.12068 1.54814 1.82565 2.68934 2.86890 2.90969 3.37481 3.40000 3.42085 3.44932 3.84312 4.40940 4.43438 4.65327 4.72669 4.85080 4.96267 5.06817 5.09835 5.14781 5.16734 5.30360 5.33725 5.35470 5.55248 5.61395 5.63493 5.75408 5.87498 6.11652 6.15395 6.24742 6.38724 6.44010 6.57709 6.65132 6.93774 7.24637 7.39196 7.44517 7.69152 7.90470 7.99345 8.06741 8.43823 9.07082 9.69835 10.39441 11.35255 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.003380 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.636638 B = 8282.240379 C = 8974.893754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.631 5.631 3 C 0.068 3.932 4 C 0.524 3.476 5 O -0.461 6.461 6 N -0.561 5.561 7 C 0.106 3.894 8 C 0.517 3.483 9 O -0.547 6.547 10 N -0.601 5.601 11 C 0.077 3.923 12 C 0.142 3.858 13 H 0.107 0.893 14 C -0.151 4.151 15 C 0.100 3.900 16 H 0.114 0.886 17 C 0.172 3.828 18 N -0.597 5.597 19 C -0.232 4.232 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.707 3.293 28 O -0.541 6.541 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 2.130 -8.881 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.371 5.371 3 C -0.058 4.058 4 C 0.311 3.689 5 O -0.329 6.329 6 N -0.306 5.306 7 C -0.019 4.019 8 C 0.304 3.696 9 O -0.426 6.426 10 N -0.335 5.335 11 C -0.049 4.049 12 C 0.032 3.968 13 H 0.125 0.875 14 C -0.191 4.191 15 C -0.002 4.002 16 H 0.132 0.868 17 C 0.047 3.953 18 N -0.321 5.321 19 C -0.360 4.360 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.409 3.591 28 O -0.415 6.415 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.213 2.294 -8.321 20.155 hybrid contribution 1.037 0.322 -0.184 1.101 sum -17.176 2.616 -8.505 19.344 Atomic orbital electron populations 1.21498 0.74108 1.03895 1.02310 1.47406 1.06639 1.05312 1.77766 1.22473 0.86541 0.90316 1.06509 1.20846 0.91521 0.82039 0.74459 1.90867 1.30830 1.65922 1.45313 1.45866 1.07536 1.08952 1.68199 1.21442 0.89724 0.93890 0.96865 1.20120 0.79547 0.79218 0.90744 1.90675 1.53479 1.52484 1.45948 1.49142 1.33038 1.41630 1.09719 1.23415 0.93487 0.96142 0.91812 1.23151 0.88837 0.92513 0.92259 0.87489 1.24168 0.99312 0.95104 1.00499 1.24318 0.96594 0.94314 0.84988 0.86823 1.22132 0.84064 0.94141 0.94937 1.45528 1.03470 1.37536 1.45598 1.19032 0.81455 1.16236 1.19242 0.90056 1.24828 0.98290 0.98358 0.98777 1.69902 1.34429 1.23758 1.28394 0.86113 0.84702 0.77667 0.77188 1.21601 1.21694 1.20624 1.15738 0.80594 0.85351 0.77402 1.90968 1.76835 1.18718 1.54949 0.92043 0.89963 0.90207 0.85932 0.86024 0.85856 0.85938 0.90808 0.92363 0.91569 0.89616 0.93530 0.92281 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.75 11.17 59.85 0.67 1.42 16 2 N -0.63 -6.23 3.42 -187.95 -0.64 -6.87 16 3 C 0.07 0.55 7.66 -4.32 -0.03 0.52 16 4 C 0.52 7.02 8.31 -10.56 -0.09 6.93 16 5 O -0.46 -7.69 17.76 5.59 0.10 -7.59 16 6 N -0.56 -8.10 2.09 -122.02 -0.26 -8.35 16 7 C 0.11 1.56 5.47 -5.19 -0.03 1.54 16 8 C 0.52 9.78 7.96 -10.99 -0.09 9.70 16 9 O -0.55 -12.11 16.79 5.56 0.09 -12.02 16 10 N -0.60 -11.22 2.95 -156.81 -0.46 -11.68 16 11 C 0.08 1.27 6.03 -1.67 -0.01 1.26 16 12 C 0.14 2.58 5.48 -62.53 -0.34 2.24 16 13 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.15 -2.57 6.80 -22.33 -0.15 -2.72 16 15 C 0.10 1.97 5.23 -62.58 -0.33 1.64 16 16 H 0.11 2.20 8.08 -51.93 -0.42 1.78 16 17 C 0.17 4.15 4.82 -1.00 0.00 4.15 16 18 N -0.60 -14.29 3.09 -155.33 -0.48 -14.77 16 19 C -0.23 -6.14 10.38 -15.06 -0.16 -6.29 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -26.93 10.66 55.49 0.59 -26.34 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.71 9.98 8.31 -88.01 -0.73 9.25 16 28 O -0.54 -9.21 17.15 5.33 0.09 -9.11 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.69 8.00 -51.93 -0.42 1.27 16 35 H 0.12 1.56 7.85 -51.93 -0.41 1.15 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.05 1.30 7.77 -51.93 -0.40 0.90 16 41 H 0.06 1.57 7.45 -51.92 -0.39 1.18 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -37.20 354.51 -7.83 -45.03 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.80 Total: 0.25 kcal Atomic # 6 Polarization: 30.77 SS G_CDS: -1.39 Total: 29.38 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -1.25 Total: -68.01 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: 0.28 Total: -28.73 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.20 -7.83 -45.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032771711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.461 kcal (2) G-P(sol) polarization free energy of solvation -37.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds