Wall clock time and date at job start Fri Apr 10 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99724 * 2 1 4 4 O 1.21469 * 119.99668 * 185.36765 * 3 2 1 5 5 C 1.48559 * 120.00274 * 5.36525 * 3 2 1 6 6 C 1.37922 * 120.20915 * 186.70576 * 5 3 2 7 7 C 1.41609 * 118.32947 * 179.74999 * 6 5 3 8 8 O 1.21912 * 120.71599 * 180.25920 * 7 6 5 9 9 N 1.34991 * 118.57353 * 0.54613 * 7 6 5 10 10 C 1.46501 * 119.89209 * 179.73781 * 9 7 6 11 11 C 1.34768 * 120.21191 * 359.71245 * 9 7 6 12 12 N 1.30435 * 121.82572 * 0.02562 * 11 9 7 13 13 C 1.46501 * 119.99960 * 179.97438 * 2 1 3 14 14 H 1.09001 * 110.64005 * 178.30985 * 13 2 1 15 15 C 1.54323 * 110.71968 * 301.45425 * 13 2 1 16 16 N 1.47022 * 107.26718 * 140.73198 * 15 13 2 17 17 C 1.36940 * 125.64747 * 181.01857 * 16 15 13 18 18 H 1.07998 * 119.99832 * 11.87931 * 17 16 15 19 19 C 1.38808 * 120.00029 * 191.87415 * 17 16 15 20 20 N 1.31627 * 119.99724 * 205.90217 * 19 17 16 21 21 Si 1.86793 * 120.00343 * 25.90748 * 19 17 16 22 22 H 1.48498 * 109.47342 * 270.00285 * 21 19 17 23 23 H 1.48493 * 109.47328 * 149.99574 * 21 19 17 24 24 H 1.48508 * 109.47038 * 29.99600 * 21 19 17 25 25 C 1.47424 * 108.70537 * 1.29080 * 16 15 13 26 26 C 1.55123 * 104.72062 * 335.54650 * 25 16 15 27 27 H 1.08997 * 111.19623 * 279.19308 * 26 25 16 28 28 O 1.42906 * 110.93941 * 155.28881 * 26 25 16 29 29 H 1.08991 * 109.47550 * 275.37796 * 1 2 3 30 30 H 1.09004 * 109.47255 * 35.37926 * 1 2 3 31 31 H 1.09004 * 109.46867 * 155.37717 * 1 2 3 32 32 H 1.08001 * 120.83668 * 0.02652 * 6 5 3 33 33 H 1.08998 * 109.46673 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.47024 * 299.97306 * 10 9 7 35 35 H 1.08998 * 109.47156 * 59.98165 * 10 9 7 36 36 H 1.07997 * 119.08753 * 180.02562 * 11 9 7 37 37 H 1.09004 * 109.88239 * 21.31882 * 15 13 2 38 38 H 1.08990 * 109.88162 * 260.14739 * 15 13 2 39 39 H 0.96992 * 120.00127 * 354.94259 * 20 19 17 40 40 H 1.08998 * 110.36625 * 94.48030 * 25 16 15 41 41 H 1.09004 * 110.36304 * 216.80025 * 25 16 15 42 42 H 0.96704 * 113.99324 * 67.95963 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3495 1.1695 -0.0984 5 6 1.4009 2.4510 0.1203 6 6 2.0679 3.6504 -0.0174 7 6 1.3245 4.8499 0.0994 8 8 1.8691 5.9341 -0.0194 9 7 0.0008 4.7673 0.3510 10 6 -0.7950 5.9902 0.4831 11 6 -0.5910 3.5635 0.4804 12 7 0.0811 2.4511 0.3700 13 6 2.1975 -1.2687 0.0006 14 1 3.2726 -1.0917 -0.0296 15 6 1.8182 -2.1176 1.2323 16 7 1.7365 -3.5172 0.7893 17 6 1.4059 -4.5861 1.5788 18 1 0.9938 -4.4230 2.5637 19 6 1.6002 -5.8792 1.1132 20 7 0.8642 -6.8649 1.5815 21 14 2.9063 -6.2207 -0.1778 22 1 2.3107 -6.0884 -1.5317 23 1 3.4299 -7.5988 0.0002 24 1 4.0169 -5.2461 -0.0283 25 6 2.0760 -3.5800 -0.6439 26 6 1.7549 -2.1631 -1.1876 27 1 0.6893 -2.0494 -1.3864 28 8 2.5247 -1.8784 -2.3574 29 1 -0.3634 0.0963 1.0230 30 1 -0.3634 0.8379 -0.5950 31 1 -0.3633 -0.9343 -0.4282 32 1 3.1296 3.6740 -0.2139 33 1 -1.8339 5.7277 0.6831 34 1 -0.4066 6.5892 1.3068 35 1 -0.7368 6.5634 -0.4422 36 1 -1.6512 3.5185 0.6812 37 1 0.8525 -1.7951 1.6216 38 1 2.5832 -2.0165 2.0020 39 1 0.2374 -6.7015 2.3034 40 1 3.1339 -3.8080 -0.7735 41 1 1.4617 -4.3270 -1.1468 42 1 2.2839 -2.4131 -3.1264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047415201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:49 Heat of formation + Delta-G solvation = -9.619548 kcal Electronic energy + Delta-G solvation = -27697.387999 eV Core-core repulsion = 23680.628838 eV Total energy + Delta-G solvation = -4016.759161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.20887 -40.12657 -38.33693 -37.84618 -35.72553 -35.45829 -34.94132 -32.15968 -31.42326 -29.48901 -28.37367 -27.79715 -26.79455 -25.21991 -24.74442 -23.57909 -21.34480 -20.73785 -19.49648 -18.87735 -17.79747 -17.59044 -17.47980 -17.14684 -16.89668 -16.31365 -15.95710 -15.37606 -15.01790 -14.79049 -14.28739 -14.00898 -13.79067 -13.69248 -13.64121 -13.35381 -13.32956 -13.17531 -13.00143 -12.49828 -12.43621 -12.23634 -11.89671 -11.49139 -11.11526 -10.88721 -10.84423 -10.72109 -10.47844 -10.17986 -10.00455 -9.80935 -9.48494 -9.30771 -8.98071 -8.57652 -8.44256 -7.17991 -6.39006 -3.27448 -0.07686 1.23922 1.93259 2.54427 2.78367 3.35806 3.36452 3.49922 3.52074 3.64966 3.93839 4.06987 4.27392 4.38077 4.53967 4.66889 4.73019 4.94492 4.96596 5.05380 5.12543 5.21695 5.28615 5.32333 5.43507 5.48643 5.63803 5.75432 5.82628 5.84879 6.04329 6.10321 6.33515 6.36778 6.45506 6.56284 6.68394 7.16150 7.32294 7.37480 7.58827 7.86587 8.03223 8.27170 8.95884 9.50008 10.15412 11.09102 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.003004 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.002041 B = 9317.603308 C = 9769.999385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.579 5.579 3 C 0.566 3.434 4 O -0.520 6.520 5 C 0.136 3.864 6 C -0.212 4.212 7 C 0.518 3.482 8 O -0.527 6.527 9 N -0.524 5.524 10 C 0.061 3.939 11 C 0.367 3.633 12 N -0.516 5.516 13 C 0.134 3.866 14 H 0.116 0.884 15 C 0.131 3.869 16 N -0.602 5.602 17 C -0.330 4.330 18 H 0.079 0.921 19 C -0.018 4.018 20 N -0.917 5.917 21 Si 1.061 2.939 22 H -0.294 1.294 23 H -0.297 1.297 24 H -0.285 1.285 25 C 0.080 3.920 26 C 0.080 3.920 27 H 0.073 0.927 28 O -0.559 6.559 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.211 0.789 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 22.873 -4.729 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.309 5.309 3 C 0.352 3.648 4 O -0.396 6.396 5 C 0.015 3.985 6 C -0.238 4.238 7 C 0.316 3.684 8 O -0.404 6.404 9 N -0.243 5.243 10 C -0.081 4.081 11 C 0.083 3.917 12 N -0.240 5.240 13 C 0.030 3.970 14 H 0.134 0.866 15 C 0.004 3.996 16 N -0.331 5.331 17 C -0.457 4.457 18 H 0.096 0.904 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.893 3.107 22 H -0.222 1.222 23 H -0.225 1.225 24 H -0.212 1.212 25 C -0.046 4.046 26 C 0.019 3.981 27 H 0.091 0.909 28 O -0.363 6.363 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.187 0.813 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.808 21.941 -5.264 23.569 hybrid contribution -0.682 1.437 0.652 1.719 sum -7.491 23.378 -4.613 24.979 Atomic orbital electron populations 1.22111 0.77993 1.02609 1.03009 1.47620 1.07983 1.04898 1.70446 1.17827 0.86488 0.82657 0.77862 1.90807 1.13040 1.86332 1.49408 1.21430 0.89435 0.94455 0.93219 1.23452 1.03662 0.89789 1.06945 1.17293 0.80705 0.91092 0.79274 1.90964 1.68630 1.29459 1.51333 1.46744 1.11169 1.09657 1.56725 1.22228 0.95549 0.85564 1.04786 1.25183 1.00046 0.78949 0.87518 1.68864 1.07874 1.25069 1.22200 1.22231 0.98480 0.81525 0.94732 0.86591 1.21597 0.99199 0.85303 0.93479 1.44630 1.82130 1.02294 1.04031 1.20034 1.40137 0.84466 1.01016 0.90353 1.25861 1.01188 0.91001 1.03819 1.70920 1.23100 1.34736 1.26973 0.83890 0.76891 0.74885 0.75031 1.22216 1.22471 1.21198 1.22689 0.99545 0.95281 0.87111 1.23453 0.94406 0.95159 0.85092 0.90908 1.86508 1.63219 1.65202 1.21367 0.91786 0.89293 0.91502 0.81261 0.88551 0.89608 0.89629 0.77321 0.94118 0.94463 0.92603 0.93869 0.91615 0.77682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 7.88 59.85 0.47 1.49 16 2 N -0.58 -8.87 2.89 -172.68 -0.50 -9.36 16 3 C 0.57 8.95 7.66 -12.00 -0.09 8.85 16 4 O -0.52 -9.89 15.77 5.39 0.09 -9.80 16 5 C 0.14 1.68 6.56 -82.64 -0.54 1.14 16 6 C -0.21 -2.63 9.66 -38.41 -0.37 -3.00 16 7 C 0.52 5.89 7.47 -14.88 -0.11 5.78 16 8 O -0.53 -7.60 17.18 5.00 0.09 -7.52 16 9 N -0.52 -3.56 2.97 -128.43 -0.38 -3.94 16 10 C 0.06 0.19 10.13 59.85 0.61 0.79 16 11 C 0.37 1.93 11.48 -90.68 -1.04 0.89 16 12 N -0.52 -4.68 6.30 -10.83 -0.07 -4.75 16 13 C 0.13 2.42 3.08 -66.09 -0.20 2.22 16 14 H 0.12 2.33 7.00 -51.93 -0.36 1.97 16 15 C 0.13 2.65 6.88 -3.06 -0.02 2.63 16 16 N -0.60 -14.46 3.27 -169.94 -0.56 -15.01 16 17 C -0.33 -9.20 10.43 -15.06 -0.16 -9.35 16 18 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 19 C -0.02 -0.51 5.41 -17.43 -0.09 -0.60 16 20 N -0.92 -28.04 13.70 55.49 0.76 -27.28 16 21 Si 1.06 26.27 24.70 -169.99 -4.20 22.07 16 22 H -0.29 -6.76 6.59 56.52 0.37 -6.38 16 23 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.29 -6.87 6.28 56.52 0.36 -6.51 16 25 C 0.08 1.71 4.44 -2.41 -0.01 1.70 16 26 C 0.08 1.39 3.95 -24.46 -0.10 1.29 16 27 H 0.07 1.16 6.16 -51.93 -0.32 0.84 16 28 O -0.56 -9.09 13.47 -35.23 -0.47 -9.56 16 29 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 30 H 0.09 0.90 5.79 -51.93 -0.30 0.60 16 31 H 0.07 0.83 6.14 -51.93 -0.32 0.51 16 32 H 0.17 2.24 7.70 -52.49 -0.40 1.84 16 33 H 0.10 -0.09 7.71 -51.93 -0.40 -0.49 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.21 -0.02 7.79 -52.49 -0.41 -0.43 16 37 H 0.04 0.79 7.06 -51.93 -0.37 0.42 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.95 8.73 -40.82 -0.36 7.60 16 40 H 0.04 0.97 5.67 -51.93 -0.29 0.68 16 41 H 0.07 1.44 6.17 -51.93 -0.32 1.12 16 42 H 0.38 4.36 9.12 45.56 0.42 4.78 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -38.23 340.73 -6.19 -44.42 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.41 Total: 1.79 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -1.66 Total: 13.82 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.74 Total: -60.35 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.30 Total: -26.88 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -4.20 Total: 22.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.23 -6.19 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047415201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.804 kcal (2) G-P(sol) polarization free energy of solvation -38.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds