Wall clock time and date at job start Fri Apr 10 2020 18:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34881 * 120.31137 * 2 1 4 4 C 1.38050 * 119.94938 * 180.27869 * 3 2 1 5 5 C 1.47570 * 119.72676 * 179.73993 * 4 3 2 6 6 O 1.21600 * 120.00161 * 359.71909 * 5 4 3 7 7 N 1.34780 * 119.99974 * 179.72499 * 5 4 3 8 8 C 1.46494 * 119.99944 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47337 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.67672 * 300.08422 * 9 8 7 11 11 C 1.53293 * 109.68674 * 179.52465 * 9 8 7 12 12 O 1.42957 * 109.22382 * 187.97447 * 11 9 8 13 13 C 1.42955 * 114.16851 * 62.58065 * 12 11 9 14 14 C 1.53293 * 109.22596 * 297.41935 * 13 12 11 15 15 N 1.47152 * 109.68138 * 60.59522 * 9 8 7 16 16 C 1.36930 * 120.98066 * 350.24349 * 15 9 8 17 17 H 1.08002 * 120.00577 * 31.20248 * 16 15 9 18 18 C 1.38818 * 120.00098 * 211.21058 * 16 15 9 19 19 N 1.31624 * 119.99965 * 10.73018 * 18 16 15 20 20 Si 1.86801 * 120.00103 * 190.73938 * 18 16 15 21 21 H 1.48495 * 109.47280 * 89.99673 * 20 18 16 22 22 H 1.48508 * 109.46853 * 209.99398 * 20 18 16 23 23 H 1.48503 * 109.46921 * 329.99410 * 20 18 16 24 24 N 1.34155 * 120.54397 * 359.45560 * 4 3 2 25 25 C 1.30607 * 120.62993 * 0.26266 * 24 4 3 26 26 C 1.34962 * 120.30459 * 179.73824 * 2 1 3 27 27 O 1.21859 * 120.27561 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.46908 * 180.26352 * 1 2 3 29 29 H 1.09002 * 109.46832 * 300.25945 * 1 2 3 30 30 H 1.08995 * 109.46982 * 60.25581 * 1 2 3 31 31 H 1.08000 * 120.02370 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99990 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47099 * 59.99759 * 8 7 5 34 34 H 1.08996 * 109.47660 * 299.99901 * 8 7 5 35 35 H 1.08999 * 109.51408 * 307.90358 * 11 9 8 36 36 H 1.09004 * 109.51261 * 68.04570 * 11 9 8 37 37 H 1.09004 * 109.51453 * 177.48957 * 13 12 11 38 38 H 1.09007 * 109.55595 * 57.37054 * 13 12 11 39 39 H 1.08998 * 109.67960 * 292.57901 * 14 13 12 40 40 H 1.08995 * 109.71817 * 172.03954 * 14 13 12 41 41 H 0.96988 * 119.99794 * 180.02562 * 19 18 16 42 42 H 1.08002 * 119.98329 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1458 1.1644 0.0000 4 6 3.5262 1.1557 -0.0058 5 6 4.2660 2.4326 -0.0116 6 8 3.6597 3.4866 -0.0164 7 7 5.6138 2.4305 -0.0117 8 6 6.3482 3.6980 -0.0180 9 6 7.8520 3.4162 -0.0161 10 1 8.1177 2.8475 0.8751 11 6 8.6255 4.7396 -0.0347 12 8 10.0169 4.4690 -0.2200 13 6 10.3294 3.8353 -1.4627 14 6 9.6434 2.4655 -1.5174 15 7 8.2142 2.6501 -1.2191 16 6 7.2499 2.1241 -2.0366 17 1 6.2998 2.6264 -2.1437 18 6 7.4933 0.9451 -2.7278 19 7 8.5554 0.2221 -2.4422 20 14 6.3136 0.3848 -4.0634 21 1 6.7411 0.9473 -5.3694 22 1 6.3186 -1.0984 -4.1378 23 1 4.9432 0.8598 -3.7445 24 7 4.2007 -0.0039 -0.0005 25 6 3.5638 -1.1442 0.0051 26 6 2.1460 -1.1652 0.0053 27 8 1.5475 -2.2266 0.0097 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3633 0.5179 0.8877 30 1 -0.3633 0.5098 -0.8922 31 1 1.6112 2.1029 0.0004 32 1 6.0975 1.5898 -0.0076 33 1 6.0858 4.2744 0.8692 34 1 6.0858 4.2656 -0.9107 35 1 8.2632 5.3616 -0.8532 36 1 8.4787 5.2604 0.9116 37 1 11.4087 3.7055 -1.5440 38 1 9.9741 4.4536 -2.2872 39 1 10.0900 1.8015 -0.7774 40 1 9.7581 2.0362 -2.5126 41 1 8.7257 -0.6015 -2.9254 42 1 4.1173 -2.0716 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051033470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:11 Heat of formation + Delta-G solvation = -28.104874 kcal Electronic energy + Delta-G solvation = -28183.624363 eV Core-core repulsion = 24166.063618 eV Total energy + Delta-G solvation = -4017.560745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90731 -39.37180 -38.37318 -37.35681 -36.01496 -35.33108 -33.56305 -31.59344 -30.63490 -30.26696 -28.63803 -27.20468 -25.86767 -24.59414 -23.88396 -23.42034 -21.77532 -20.44779 -19.67347 -18.65671 -18.15654 -17.04636 -16.59225 -16.53308 -15.88799 -15.71741 -15.52500 -14.97197 -14.65565 -14.58699 -14.39626 -14.00841 -13.90718 -13.79351 -13.72684 -13.32672 -12.95072 -12.77164 -12.62862 -12.42749 -11.82058 -11.55512 -11.49474 -11.16882 -11.02279 -10.87371 -10.74254 -10.40382 -10.22720 -10.03324 -9.91521 -9.64167 -9.35724 -8.97597 -8.66527 -8.42619 -8.12658 -6.69727 -5.87046 -3.36303 0.43582 1.26181 2.09967 3.02246 3.30592 3.38750 3.39313 3.57346 3.85407 4.12895 4.16998 4.37300 4.52830 4.59714 4.71551 4.80323 5.01384 5.15369 5.21470 5.29938 5.33124 5.59652 5.67777 5.73856 5.85635 5.95695 6.03083 6.09226 6.15959 6.21895 6.34866 6.37491 6.53324 6.75857 7.04339 7.09130 7.42649 7.51584 7.63513 7.73335 7.87994 8.20733 8.32602 8.72845 9.09220 9.69564 10.28257 11.19934 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.004448 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.529045 B = 6292.966280 C = 7420.253669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.483 5.483 3 C 0.159 3.841 4 C -0.059 4.059 5 C 0.580 3.420 6 O -0.569 6.569 7 N -0.670 5.670 8 C 0.134 3.866 9 C 0.124 3.876 10 H 0.042 0.958 11 C 0.057 3.943 12 O -0.392 6.392 13 C 0.035 3.965 14 C 0.144 3.856 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.072 0.928 18 C 0.017 3.983 19 N -0.897 5.897 20 Si 0.895 3.105 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.281 1.281 24 N -0.358 5.358 25 C 0.038 3.962 26 C 0.474 3.526 27 O -0.531 6.531 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.186 0.814 32 H 0.427 0.573 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.092 0.908 41 H 0.255 0.745 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 2.864 5.561 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.194 5.194 3 C 0.024 3.976 4 C -0.183 4.183 5 C 0.364 3.636 6 O -0.450 6.450 7 N -0.320 5.320 8 C 0.010 3.990 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.023 4.023 12 O -0.311 6.311 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.089 0.911 18 C -0.183 4.183 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.206 1.206 24 N -0.072 5.072 25 C -0.152 4.152 26 C 0.272 3.728 27 O -0.407 6.407 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.203 0.797 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.873 2.989 5.615 11.745 hybrid contribution -1.418 -0.924 -1.128 2.034 sum -11.291 2.065 4.487 12.324 Atomic orbital electron populations 1.22370 0.76096 1.06639 1.04056 1.45520 1.10090 1.07005 1.56803 1.23160 0.93680 0.90916 0.89832 1.20611 0.89458 0.93698 1.14572 1.17151 0.82893 0.86075 0.77484 1.90739 1.68946 1.31346 1.53998 1.45846 1.04856 1.11576 1.69735 1.21238 0.90960 0.85645 1.01136 1.21436 0.91543 0.93270 0.92057 0.94012 1.22858 0.82593 0.96355 1.00456 1.87798 1.23697 1.80301 1.39296 1.23356 0.99315 0.96528 0.85122 1.21411 0.83129 0.91271 1.02298 1.44079 1.02046 1.62312 1.23215 1.19157 0.96705 1.02529 1.20071 0.91051 1.25070 0.97493 0.95519 1.00198 1.69963 1.27895 1.14576 1.41599 0.86404 0.80924 0.77886 0.82251 1.21510 1.21487 1.20635 1.67800 1.40221 0.97697 1.01531 1.24784 0.89004 0.97867 1.03548 1.18898 0.90901 0.83317 0.79692 1.90914 1.70590 1.28085 1.51143 0.87513 0.89476 0.89482 0.79678 0.73285 0.92029 0.91232 0.93497 0.89917 0.90274 0.94137 0.95236 0.88958 0.93453 0.79032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.64 59.85 0.64 1.00 16 2 N -0.48 -5.61 2.97 -126.19 -0.38 -5.98 16 3 C 0.16 1.96 9.96 -16.28 -0.16 1.79 16 4 C -0.06 -0.95 6.71 -83.11 -0.56 -1.51 16 5 C 0.58 10.52 7.79 -12.45 -0.10 10.43 16 6 O -0.57 -10.88 16.28 5.28 0.09 -10.80 16 7 N -0.67 -12.74 3.76 -61.34 -0.23 -12.97 16 8 C 0.13 2.42 4.45 -4.05 -0.02 2.40 16 9 C 0.12 2.39 3.21 -67.42 -0.22 2.17 16 10 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 11 C 0.06 0.98 6.29 37.31 0.23 1.21 16 12 O -0.39 -7.52 10.74 -35.23 -0.38 -7.90 16 13 C 0.03 0.66 6.98 37.31 0.26 0.92 16 14 C 0.14 3.26 5.38 -3.53 -0.02 3.24 16 15 N -0.59 -13.50 3.03 -164.30 -0.50 -14.00 16 16 C -0.26 -6.31 7.05 -15.06 -0.11 -6.41 16 17 H 0.07 1.80 5.81 -52.49 -0.30 1.49 16 18 C 0.02 0.45 5.06 -17.43 -0.09 0.36 16 19 N -0.90 -24.22 11.14 55.49 0.62 -23.61 16 20 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 N -0.36 -6.01 9.62 -9.34 -0.09 -6.10 16 25 C 0.04 0.56 11.23 -16.71 -0.19 0.37 16 26 C 0.47 6.79 7.46 -14.82 -0.11 6.68 16 27 O -0.53 -8.61 16.49 5.05 0.08 -8.53 16 28 H 0.11 0.88 6.94 -51.93 -0.36 0.52 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.19 1.80 7.58 -52.49 -0.40 1.40 16 32 H 0.43 8.86 6.63 -40.82 -0.27 8.59 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 41 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.19 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -31.55 347.63 -6.42 -37.97 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.42 Total: 7.79 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: -0.43 Total: 22.65 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.58 Total: -62.66 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.21 Total: -27.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.55 -6.42 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051033470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.868 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds