Wall clock time and date at job start Fri Apr 10 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34881 * 120.31137 * 2 1 4 4 C 1.38050 * 119.94938 * 180.27869 * 3 2 1 5 5 C 1.47570 * 119.72676 * 179.73993 * 4 3 2 6 6 O 1.21600 * 120.00161 * 359.71909 * 5 4 3 7 7 N 1.34780 * 119.99974 * 179.72499 * 5 4 3 8 8 C 1.46494 * 119.99944 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47337 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.67672 * 300.08422 * 9 8 7 11 11 C 1.53293 * 109.68674 * 179.52465 * 9 8 7 12 12 O 1.42957 * 109.22382 * 187.97447 * 11 9 8 13 13 C 1.42955 * 114.16851 * 62.58065 * 12 11 9 14 14 C 1.53293 * 109.22596 * 297.41935 * 13 12 11 15 15 N 1.47152 * 109.68138 * 60.59522 * 9 8 7 16 16 C 1.36930 * 120.98066 * 350.24349 * 15 9 8 17 17 H 1.08002 * 120.00577 * 31.20248 * 16 15 9 18 18 C 1.38818 * 120.00098 * 211.21058 * 16 15 9 19 19 N 1.31624 * 119.99965 * 10.73018 * 18 16 15 20 20 Si 1.86801 * 120.00103 * 190.73938 * 18 16 15 21 21 H 1.48495 * 109.47280 * 89.99673 * 20 18 16 22 22 H 1.48508 * 109.46853 * 209.99398 * 20 18 16 23 23 H 1.48503 * 109.46921 * 329.99410 * 20 18 16 24 24 N 1.34155 * 120.54397 * 359.45560 * 4 3 2 25 25 C 1.30607 * 120.62993 * 0.26266 * 24 4 3 26 26 C 1.34962 * 120.30459 * 179.73824 * 2 1 3 27 27 O 1.21859 * 120.27561 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.46908 * 180.26352 * 1 2 3 29 29 H 1.09002 * 109.46832 * 300.25945 * 1 2 3 30 30 H 1.08995 * 109.46982 * 60.25581 * 1 2 3 31 31 H 1.08000 * 120.02370 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99990 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47099 * 59.99759 * 8 7 5 34 34 H 1.08996 * 109.47660 * 299.99901 * 8 7 5 35 35 H 1.08999 * 109.51408 * 307.90358 * 11 9 8 36 36 H 1.09004 * 109.51261 * 68.04570 * 11 9 8 37 37 H 1.09004 * 109.51453 * 177.48957 * 13 12 11 38 38 H 1.09007 * 109.55595 * 57.37054 * 13 12 11 39 39 H 1.08998 * 109.67960 * 292.57901 * 14 13 12 40 40 H 1.08995 * 109.71817 * 172.03954 * 14 13 12 41 41 H 0.96988 * 119.99794 * 180.02562 * 19 18 16 42 42 H 1.08002 * 119.98329 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1458 1.1644 0.0000 4 6 3.5262 1.1557 -0.0058 5 6 4.2660 2.4326 -0.0116 6 8 3.6597 3.4866 -0.0164 7 7 5.6138 2.4305 -0.0117 8 6 6.3482 3.6980 -0.0180 9 6 7.8520 3.4162 -0.0161 10 1 8.1177 2.8475 0.8751 11 6 8.6255 4.7396 -0.0347 12 8 10.0169 4.4690 -0.2200 13 6 10.3294 3.8353 -1.4627 14 6 9.6434 2.4655 -1.5174 15 7 8.2142 2.6501 -1.2191 16 6 7.2499 2.1241 -2.0366 17 1 6.2998 2.6264 -2.1437 18 6 7.4933 0.9451 -2.7278 19 7 8.5554 0.2221 -2.4422 20 14 6.3136 0.3848 -4.0634 21 1 6.7411 0.9473 -5.3694 22 1 6.3186 -1.0984 -4.1378 23 1 4.9432 0.8598 -3.7445 24 7 4.2007 -0.0039 -0.0005 25 6 3.5638 -1.1442 0.0051 26 6 2.1460 -1.1652 0.0053 27 8 1.5475 -2.2266 0.0097 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3633 0.5179 0.8877 30 1 -0.3633 0.5098 -0.8922 31 1 1.6112 2.1029 0.0004 32 1 6.0975 1.5898 -0.0076 33 1 6.0858 4.2744 0.8692 34 1 6.0858 4.2656 -0.9107 35 1 8.2632 5.3616 -0.8532 36 1 8.4787 5.2604 0.9116 37 1 11.4087 3.7055 -1.5440 38 1 9.9741 4.4536 -2.2872 39 1 10.0900 1.8015 -0.7774 40 1 9.7581 2.0362 -2.5126 41 1 8.7257 -0.6015 -2.9254 42 1 4.1173 -2.0716 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051033470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:10 Heat of formation + Delta-G solvation = -51.389013 kcal Electronic energy + Delta-G solvation = -28184.634039 eV Core-core repulsion = 24166.063618 eV Total energy + Delta-G solvation = -4018.570421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.99530 -40.79464 -39.87316 -38.57792 -37.08357 -36.88297 -35.25042 -33.24550 -32.19721 -31.55278 -29.49177 -28.94951 -27.25994 -25.68780 -25.22681 -25.03260 -23.32650 -21.75948 -21.34354 -19.79161 -19.45567 -18.40913 -17.97611 -17.65898 -17.47252 -17.20356 -16.70396 -16.39160 -16.23354 -16.10112 -15.64521 -15.45390 -15.39594 -15.17849 -14.83300 -14.58413 -14.51823 -14.19995 -13.81101 -13.46406 -13.37922 -13.06861 -12.86388 -12.73932 -12.68810 -12.45775 -12.13942 -12.04334 -11.96299 -11.82245 -11.34147 -11.21247 -10.66304 -10.53159 -10.46661 -9.88854 -9.33253 -8.57281 -7.83690 -5.33070 -0.60879 0.06403 1.14257 1.38668 1.43023 1.47315 1.75992 2.28826 2.46940 2.63139 3.03335 3.04849 3.10789 3.34275 3.48277 3.58363 3.85358 4.05701 4.08410 4.21092 4.28569 4.32910 4.39031 4.51536 4.62701 4.67193 4.68493 4.69167 4.71888 4.80186 4.91366 5.05218 5.15699 5.31764 5.34667 5.57970 5.67779 5.73028 6.31351 6.34243 6.41347 6.49319 6.76800 7.15303 7.27285 7.81018 8.36704 9.21350 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.004448 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.529045 B = 6292.966280 C = 7420.253669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.474 5.474 3 C 0.197 3.803 4 C -0.097 4.097 5 C 0.580 3.420 6 O -0.581 6.581 7 N -0.682 5.682 8 C 0.140 3.860 9 C 0.123 3.877 10 H 0.034 0.966 11 C 0.059 3.941 12 O -0.398 6.398 13 C 0.047 3.953 14 C 0.149 3.851 15 N -0.605 5.605 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.026 4.026 19 N -0.925 5.925 20 Si 0.939 3.061 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.281 1.281 24 N -0.383 5.383 25 C 0.023 3.977 26 C 0.474 3.526 27 O -0.553 6.553 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.221 0.779 32 H 0.417 0.583 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.004 0.996 40 H 0.065 0.935 41 H 0.248 0.752 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 4.747 6.186 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.183 5.183 3 C 0.061 3.939 4 C -0.221 4.221 5 C 0.367 3.633 6 O -0.463 6.463 7 N -0.331 5.331 8 C 0.016 3.984 9 C 0.017 3.983 10 H 0.052 0.948 11 C -0.020 4.020 12 O -0.316 6.316 13 C -0.031 4.031 14 C 0.024 3.976 15 N -0.331 5.331 16 C -0.365 4.365 17 H 0.086 0.914 18 C -0.222 4.222 19 N -0.571 5.571 20 Si 0.770 3.230 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.206 1.206 24 N -0.099 5.099 25 C -0.166 4.166 26 C 0.272 3.728 27 O -0.432 6.432 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.237 0.763 32 H 0.255 0.745 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.764 4.901 6.251 14.194 hybrid contribution -0.956 -1.455 -1.252 2.144 sum -12.719 3.446 4.999 14.094 Atomic orbital electron populations 1.22782 0.72951 1.07055 1.06990 1.45693 1.11922 1.06012 1.54632 1.23464 0.92546 0.92002 0.85928 1.20440 0.90899 0.92672 1.18088 1.17389 0.82533 0.86798 0.76628 1.90715 1.68971 1.31963 1.54699 1.45906 1.05467 1.11246 1.70446 1.21226 0.89918 0.85517 1.01747 1.21590 0.92920 0.93746 0.90030 0.94849 1.22993 0.81253 0.95112 1.02635 1.87801 1.24804 1.79940 1.39097 1.23197 1.00327 0.94064 0.85472 1.21234 0.83493 0.93015 0.99899 1.44298 1.01884 1.62463 1.24455 1.19204 0.96550 1.01640 1.19093 0.91360 1.25499 0.98571 0.96143 1.02023 1.70077 1.29328 1.14893 1.42773 0.85702 0.79703 0.76906 0.80692 1.21725 1.22368 1.20646 1.67697 1.41443 0.98441 1.02273 1.24908 0.89752 0.97697 1.04215 1.18778 0.90753 0.83784 0.79487 1.90902 1.70973 1.29004 1.52280 0.88386 0.86224 0.86869 0.76288 0.74513 0.89391 0.92423 0.92954 0.86275 0.87903 0.93683 0.97755 0.91650 0.94219 0.78369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.64 127.77 1.36 1.81 16 2 N -0.47 -9.76 2.97 -671.20 -2.00 -11.76 16 3 C 0.20 4.31 9.96 84.18 0.84 5.15 16 4 C -0.10 -3.00 6.71 41.21 0.28 -2.72 16 5 C 0.58 20.46 7.79 86.71 0.68 21.14 16 6 O -0.58 -21.08 16.28 -4.03 -0.07 -21.14 16 7 N -0.68 -25.67 3.76 -466.23 -1.75 -27.43 16 8 C 0.14 4.85 4.45 86.38 0.38 5.24 16 9 C 0.12 4.63 3.21 44.96 0.14 4.77 16 10 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 11 C 0.06 1.87 6.29 72.08 0.45 2.32 16 12 O -0.40 -14.37 10.74 -148.98 -1.60 -15.97 16 13 C 0.05 1.74 6.98 72.08 0.50 2.24 16 14 C 0.15 6.82 5.38 86.35 0.46 7.28 16 15 N -0.61 -27.73 3.03 -673.74 -2.04 -29.77 16 16 C -0.23 -11.68 7.05 84.04 0.59 -11.09 16 17 H 0.07 3.44 5.81 -2.91 -0.02 3.43 16 18 C -0.03 -1.35 5.06 84.86 0.43 -0.92 16 19 N -0.92 -51.57 11.14 21.65 0.24 -51.33 16 20 Si 0.94 44.46 29.57 68.60 2.03 46.48 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 N -0.38 -12.94 9.62 -183.46 -1.77 -14.71 16 25 C 0.02 0.70 11.23 85.75 0.96 1.66 16 26 C 0.47 13.09 7.46 85.09 0.63 13.72 16 27 O -0.55 -17.56 16.49 -4.86 -0.08 -17.64 16 28 H 0.10 1.36 6.94 -2.39 -0.02 1.34 16 29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.22 3.29 7.58 -2.91 -0.02 3.26 16 32 H 0.42 17.57 6.63 -92.71 -0.61 16.96 16 33 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.06 2.14 7.57 -2.39 -0.02 2.13 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 37 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.07 3.34 6.33 -2.39 -0.02 3.32 16 41 H 0.25 13.71 8.31 -92.72 -0.77 12.94 16 42 H 0.20 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -69.31 347.63 1.13 -68.18 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.45 Total: 24.48 kcal Atomic # 6 Polarization: 42.89 SS G_CDS: 7.72 Total: 50.61 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -7.32 Total: -135.00 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.75 Total: -54.75 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.31 1.13 -68.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051033470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.790 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds