Wall clock time and date at job start Fri Apr 10 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34949 * 126.54043 * 2 1 4 4 O 1.35203 * 125.49565 * 0.24393 * 3 2 1 5 5 N 1.31541 * 109.01141 * 179.97438 * 3 2 1 6 6 C 1.33227 * 109.76214 * 359.97438 * 5 3 2 7 7 C 1.36722 * 107.96020 * 359.97438 * 6 5 3 8 8 C 1.46375 * 126.81755 * 180.02562 * 7 6 5 9 9 O 1.21739 * 119.99610 * 206.43767 * 8 7 6 10 10 N 1.34776 * 120.00732 * 26.44329 * 8 7 6 11 11 C 1.47130 * 121.05037 * 7.91705 * 10 8 7 12 12 C 1.53228 * 108.72519 * 127.77463 * 11 10 8 13 13 O 1.43110 * 109.34298 * 54.12899 * 12 11 10 14 14 C 1.42493 * 113.97687 * 300.04256 * 13 12 11 15 15 C 1.53460 * 113.76783 * 286.79380 * 14 13 12 16 16 N 1.47670 * 85.97409 * 268.72019 * 15 14 13 17 17 C 1.36932 * 134.45766 * 155.74617 * 16 15 14 18 18 H 1.08006 * 119.99767 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00416 * 359.94992 * 17 16 15 20 20 N 1.31627 * 119.99553 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00367 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47105 * 59.99800 * 21 19 17 23 23 H 1.48501 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47019 * 299.99828 * 21 19 17 25 25 C 1.47676 * 91.08260 * 335.70957 * 16 15 14 26 26 C 1.47337 * 121.05637 * 187.63835 * 10 8 7 27 27 H 1.08998 * 109.47579 * 95.70765 * 1 2 3 28 28 H 1.09009 * 109.46745 * 215.70876 * 1 2 3 29 29 H 1.09001 * 109.47186 * 335.70123 * 1 2 3 30 30 H 0.96697 * 113.99946 * 269.72010 * 4 3 2 31 31 H 1.07993 * 126.01885 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.59398 * 247.54549 * 11 10 8 33 33 H 1.08998 * 109.59298 * 8.00878 * 11 10 8 34 34 H 1.09001 * 109.48993 * 174.08746 * 12 11 10 35 35 H 1.09000 * 109.49339 * 294.14321 * 12 11 10 36 36 H 1.09001 * 113.79266 * 22.98204 * 15 14 13 37 37 H 1.09003 * 113.79587 * 154.45666 * 15 14 13 38 38 H 0.97002 * 119.99409 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.79235 * 270.02259 * 25 16 15 40 40 H 1.09006 * 113.89612 * 138.57567 * 25 16 15 41 41 H 1.08996 * 109.74615 * 348.03401 * 26 10 8 42 42 H 1.09005 * 109.74311 * 108.75602 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8515 2.3703 0.0047 5 7 3.5228 0.6880 0.0006 6 6 3.5747 -0.6432 0.0015 7 6 2.2915 -1.1152 0.0021 8 6 1.8728 -2.5177 0.0037 9 8 0.7940 -2.8314 -0.4653 10 7 2.6813 -3.4620 0.5245 11 6 3.9075 -3.0950 1.2501 12 6 3.9022 -3.7978 2.6117 13 8 3.7208 -5.2041 2.4186 14 6 2.5037 -5.5461 1.7612 15 6 1.2580 -5.3849 2.6428 16 7 1.4671 -6.7982 3.0161 17 6 1.1187 -7.5670 4.0944 18 1 1.4000 -8.6092 4.1280 19 6 0.4043 -7.0068 5.1445 20 7 0.0614 -5.7366 5.1034 21 14 -0.0704 -8.0554 6.6157 22 1 1.1566 -8.5881 7.2604 23 1 -0.8233 -7.2271 7.5916 24 1 -0.9226 -9.1847 6.1643 25 6 2.2018 -7.0505 1.7602 26 6 2.3621 -4.8941 0.3904 27 1 -0.3634 -0.1022 -1.0225 28 1 -0.3633 -0.8345 0.5999 29 1 -0.3633 0.9366 0.4229 30 1 1.7313 2.7480 -0.8773 31 1 4.4723 -1.2438 0.0025 32 1 4.7795 -3.4125 0.6783 33 1 3.9365 -2.0153 1.3962 34 1 4.8516 -3.6195 3.1167 35 1 3.0873 -3.4057 3.2202 36 1 1.3918 -4.6873 3.4696 37 1 0.3409 -5.2097 2.0804 38 1 -0.4374 -5.3451 5.8374 39 1 1.5654 -7.3708 0.9352 40 1 3.0856 -7.6765 1.8837 41 1 1.3396 -5.0115 0.0317 42 1 3.0546 -5.3617 -0.3096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053375081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:23 Heat of formation + Delta-G solvation = 40.122806 kcal Electronic energy + Delta-G solvation = -28294.789149 eV Core-core repulsion = 24280.186979 eV Total energy + Delta-G solvation = -4014.602171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.54941 -40.29385 -38.64368 -37.59860 -36.32094 -34.78693 -34.10533 -32.30760 -30.55709 -29.47966 -27.80804 -27.35841 -26.01996 -25.09845 -23.62863 -23.01471 -21.94423 -21.45044 -19.53500 -18.88303 -18.78210 -17.41132 -16.89216 -16.79895 -16.49034 -15.80332 -15.55986 -15.27257 -14.92973 -14.64062 -14.49219 -14.23821 -13.91085 -13.79679 -13.43231 -13.23787 -13.00914 -12.93749 -12.63722 -12.51129 -12.34392 -11.86200 -11.35513 -11.15033 -10.88002 -10.81087 -10.70799 -10.57080 -10.24548 -10.07094 -10.03350 -9.76700 -9.58947 -9.27378 -8.82215 -8.72702 -8.28111 -6.87989 -5.74764 -3.07077 1.00581 1.90769 2.35028 2.90954 3.11217 3.41471 3.45018 3.46410 3.50329 4.04487 4.25099 4.45299 4.50690 4.70685 4.88813 4.95445 5.00921 5.06508 5.11402 5.24335 5.27862 5.31266 5.36275 5.53167 5.66134 5.73555 5.80823 5.95138 6.05431 6.08247 6.17084 6.26432 6.39995 6.48642 6.53821 6.99545 7.18206 7.18764 7.27593 7.49726 7.50146 7.80326 7.98349 8.03169 9.04992 9.71990 10.58013 11.42273 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.003468 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.150200 B = 8071.035155 C = 8580.309118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.427 5.427 3 C 0.392 3.608 4 O -0.439 6.439 5 N -0.486 5.486 6 C 0.042 3.958 7 C -0.067 4.067 8 C 0.595 3.405 9 O -0.538 6.538 10 N -0.593 5.593 11 C 0.056 3.944 12 C 0.048 3.952 13 O -0.341 6.341 14 C 0.049 3.951 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.137 3.863 26 C 0.103 3.897 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.404 0.596 31 H 0.192 0.808 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.253 0.747 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 13.265 -13.429 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.120 5.120 3 C 0.093 3.907 4 O -0.240 6.240 5 N -0.215 5.215 6 C -0.111 4.111 7 C -0.183 4.183 8 C 0.383 3.617 9 O -0.416 6.416 10 N -0.326 5.326 11 C -0.067 4.067 12 C -0.030 4.030 13 O -0.258 6.258 14 C 0.007 3.993 15 C 0.025 3.975 16 N -0.329 5.329 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.011 3.989 26 C -0.020 4.020 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.261 0.739 31 H 0.209 0.791 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.971 13.494 -12.677 19.454 hybrid contribution -1.363 -0.554 0.273 1.496 sum 4.608 12.941 -12.405 18.508 Atomic orbital electron populations 1.22220 0.74978 1.05288 1.04740 1.45651 1.08531 1.05559 1.52252 1.20194 0.84469 0.81365 1.04680 1.84821 1.87012 1.17891 1.34267 1.70320 1.16418 1.12714 1.22021 1.22776 0.95664 0.90105 1.02604 1.20638 0.91240 0.88273 1.18188 1.16604 0.83773 0.82857 0.78488 1.90841 1.21137 1.82180 1.47415 1.47770 1.24261 1.06514 1.54090 1.23008 0.86888 1.02142 0.94649 1.22884 1.02801 0.82799 0.94544 1.87939 1.37909 1.21376 1.78599 1.23611 0.87840 0.97559 0.90298 1.22689 0.91321 0.88806 0.94648 1.45759 1.64196 1.07600 1.15319 1.18954 1.29331 0.92647 0.93772 0.90139 1.24765 1.00631 0.96352 0.98623 1.69812 1.43506 1.11131 1.32583 0.86184 0.78180 0.79058 0.82248 1.21035 1.21616 1.21190 1.22481 0.95139 0.90919 0.90400 1.22256 1.03404 0.77948 0.98405 0.89623 0.88407 0.88953 0.73896 0.79121 0.89975 0.87809 0.87839 0.92130 0.90653 0.94885 0.93690 0.93233 0.92511 0.87787 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.41 59.85 0.62 1.29 16 2 N -0.43 -5.08 3.20 -122.12 -0.39 -5.47 16 3 C 0.39 4.50 9.01 -89.59 -0.81 3.70 16 4 O -0.44 -3.75 13.44 -17.31 -0.23 -3.98 16 5 N -0.49 -6.15 11.22 -14.62 -0.16 -6.31 16 6 C 0.04 0.49 9.49 -17.49 -0.17 0.32 16 7 C -0.07 -0.87 6.41 -81.98 -0.53 -1.40 16 8 C 0.60 9.00 7.51 -12.99 -0.10 8.91 16 9 O -0.54 -9.56 15.36 5.15 0.08 -9.49 16 10 N -0.59 -8.49 3.03 -174.35 -0.53 -9.02 16 11 C 0.06 0.65 5.25 -3.58 -0.02 0.63 16 12 C 0.05 0.70 6.88 37.28 0.26 0.95 16 13 O -0.34 -6.39 10.52 -35.23 -0.37 -6.76 16 14 C 0.05 0.93 1.21 -90.53 -0.11 0.82 16 15 C 0.15 3.63 6.64 -3.17 -0.02 3.61 16 16 N -0.60 -15.71 3.70 -180.32 -0.67 -16.38 16 17 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.81 11.39 55.49 0.63 -27.18 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.14 2.80 8.33 -3.18 -0.03 2.78 16 26 C 0.10 1.60 5.77 -3.87 -0.02 1.57 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.13 7.59 -51.92 -0.39 0.73 16 29 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 30 H 0.40 1.22 9.06 45.56 0.41 1.63 16 31 H 0.19 1.66 6.24 -52.49 -0.33 1.33 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.07 4.36 -51.93 -0.23 0.84 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.03 7.20 -51.93 -0.37 0.66 16 36 H 0.08 2.03 6.31 -51.93 -0.33 1.71 16 37 H 0.03 0.83 7.92 -51.93 -0.41 0.42 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.75 6.86 -51.93 -0.36 1.39 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -37.06 344.34 -7.15 -44.21 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.50 Total: 1.31 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: -1.17 Total: 16.45 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -1.12 Total: -64.36 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.52 Total: -20.22 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.06 -7.15 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053375081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.330 kcal (2) G-P(sol) polarization free energy of solvation -37.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds