Wall clock time and date at job start Fri Apr 10 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34949 * 126.54043 * 2 1 4 4 O 1.35203 * 125.49565 * 0.24393 * 3 2 1 5 5 N 1.31541 * 109.01141 * 179.97438 * 3 2 1 6 6 C 1.33227 * 109.76214 * 359.97438 * 5 3 2 7 7 C 1.36722 * 107.96020 * 359.97438 * 6 5 3 8 8 C 1.46375 * 126.81755 * 180.02562 * 7 6 5 9 9 O 1.21739 * 119.99610 * 206.43767 * 8 7 6 10 10 N 1.34776 * 120.00732 * 26.44329 * 8 7 6 11 11 C 1.47130 * 121.05037 * 7.91705 * 10 8 7 12 12 C 1.53228 * 108.72519 * 127.77463 * 11 10 8 13 13 O 1.43110 * 109.34298 * 54.12899 * 12 11 10 14 14 C 1.42493 * 113.97687 * 300.04256 * 13 12 11 15 15 C 1.53460 * 113.76783 * 286.79380 * 14 13 12 16 16 N 1.47670 * 85.97409 * 268.72019 * 15 14 13 17 17 C 1.36932 * 134.45766 * 155.74617 * 16 15 14 18 18 H 1.08006 * 119.99767 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00416 * 359.94992 * 17 16 15 20 20 N 1.31627 * 119.99553 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00367 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47105 * 59.99800 * 21 19 17 23 23 H 1.48501 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47019 * 299.99828 * 21 19 17 25 25 C 1.47676 * 91.08260 * 335.70957 * 16 15 14 26 26 C 1.47337 * 121.05637 * 187.63835 * 10 8 7 27 27 H 1.08998 * 109.47579 * 95.70765 * 1 2 3 28 28 H 1.09009 * 109.46745 * 215.70876 * 1 2 3 29 29 H 1.09001 * 109.47186 * 335.70123 * 1 2 3 30 30 H 0.96697 * 113.99946 * 269.72010 * 4 3 2 31 31 H 1.07993 * 126.01885 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.59398 * 247.54549 * 11 10 8 33 33 H 1.08998 * 109.59298 * 8.00878 * 11 10 8 34 34 H 1.09001 * 109.48993 * 174.08746 * 12 11 10 35 35 H 1.09000 * 109.49339 * 294.14321 * 12 11 10 36 36 H 1.09001 * 113.79266 * 22.98204 * 15 14 13 37 37 H 1.09003 * 113.79587 * 154.45666 * 15 14 13 38 38 H 0.97002 * 119.99409 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.79235 * 270.02259 * 25 16 15 40 40 H 1.09006 * 113.89612 * 138.57567 * 25 16 15 41 41 H 1.08996 * 109.74615 * 348.03401 * 26 10 8 42 42 H 1.09005 * 109.74311 * 108.75602 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8515 2.3703 0.0047 5 7 3.5228 0.6880 0.0006 6 6 3.5747 -0.6432 0.0015 7 6 2.2915 -1.1152 0.0021 8 6 1.8728 -2.5177 0.0037 9 8 0.7940 -2.8314 -0.4653 10 7 2.6813 -3.4620 0.5245 11 6 3.9075 -3.0950 1.2501 12 6 3.9022 -3.7978 2.6117 13 8 3.7208 -5.2041 2.4186 14 6 2.5037 -5.5461 1.7612 15 6 1.2580 -5.3849 2.6428 16 7 1.4671 -6.7982 3.0161 17 6 1.1187 -7.5670 4.0944 18 1 1.4000 -8.6092 4.1280 19 6 0.4043 -7.0068 5.1445 20 7 0.0614 -5.7366 5.1034 21 14 -0.0704 -8.0554 6.6157 22 1 1.1566 -8.5881 7.2604 23 1 -0.8233 -7.2271 7.5916 24 1 -0.9226 -9.1847 6.1643 25 6 2.2018 -7.0505 1.7602 26 6 2.3621 -4.8941 0.3904 27 1 -0.3634 -0.1022 -1.0225 28 1 -0.3633 -0.8345 0.5999 29 1 -0.3633 0.9366 0.4229 30 1 1.7313 2.7480 -0.8773 31 1 4.4723 -1.2438 0.0025 32 1 4.7795 -3.4125 0.6783 33 1 3.9365 -2.0153 1.3962 34 1 4.8516 -3.6195 3.1167 35 1 3.0873 -3.4057 3.2202 36 1 1.3918 -4.6873 3.4696 37 1 0.3409 -5.2097 2.0804 38 1 -0.4374 -5.3451 5.8374 39 1 1.5654 -7.3708 0.9352 40 1 3.0856 -7.6765 1.8837 41 1 1.3396 -5.0115 0.0317 42 1 3.0546 -5.3617 -0.3096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053375081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:22 Heat of formation + Delta-G solvation = 8.293927 kcal Electronic energy + Delta-G solvation = -28296.169353 eV Core-core repulsion = 24280.186979 eV Total energy + Delta-G solvation = -4015.982374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44158 -41.63431 -39.97358 -38.35006 -37.81639 -35.99734 -35.06939 -34.31317 -31.92389 -30.59412 -29.37791 -28.18286 -27.59494 -26.85197 -24.80098 -24.44936 -22.97955 -22.73233 -20.75673 -20.23095 -19.60564 -18.83515 -18.42715 -17.75430 -17.73804 -17.18547 -16.86141 -16.63290 -16.23393 -15.95868 -15.76521 -15.34946 -15.32242 -15.01211 -14.84917 -14.67020 -14.20642 -13.99502 -13.82653 -13.68781 -13.31587 -13.21019 -12.99408 -12.83099 -12.73650 -12.56808 -12.09814 -11.97967 -11.76084 -11.62213 -11.30175 -11.00876 -10.95404 -10.90507 -10.80888 -9.73616 -9.46213 -8.95356 -7.92152 -5.26304 0.08404 1.02018 1.42775 1.45806 1.47277 1.52965 1.87501 2.07152 2.45140 2.64864 2.77096 3.24806 3.26404 3.35333 3.63314 3.73365 3.75484 3.87842 3.95540 4.12692 4.20677 4.25530 4.31204 4.46213 4.54548 4.61177 4.65560 4.71531 4.78539 4.84341 4.89497 4.94347 5.12356 5.21117 5.23678 5.30267 5.44986 5.51679 5.87845 6.16305 6.34281 6.52006 6.64321 6.87160 6.91035 7.57852 8.50912 9.24335 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.003468 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.150200 B = 8071.035155 C = 8580.309118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.434 5.434 3 C 0.404 3.596 4 O -0.440 6.440 5 N -0.509 5.509 6 C 0.061 3.939 7 C -0.097 4.097 8 C 0.594 3.406 9 O -0.575 6.575 10 N -0.596 5.596 11 C 0.064 3.936 12 C 0.041 3.959 13 O -0.359 6.359 14 C 0.077 3.923 15 C 0.150 3.850 16 N -0.635 5.635 17 C -0.233 4.233 18 H 0.088 0.912 19 C -0.070 4.070 20 N -0.958 5.958 21 Si 0.982 3.018 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.275 1.275 25 C 0.136 3.864 26 C 0.112 3.888 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.429 0.571 31 H 0.221 0.779 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.025 0.975 36 H 0.036 0.964 37 H 0.010 0.990 38 H 0.246 0.754 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 13.772 -14.658 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.127 5.127 3 C 0.104 3.896 4 O -0.245 6.245 5 N -0.239 5.239 6 C -0.093 4.093 7 C -0.213 4.213 8 C 0.383 3.617 9 O -0.456 6.456 10 N -0.328 5.328 11 C -0.057 4.057 12 C -0.036 4.036 13 O -0.277 6.277 14 C 0.035 3.965 15 C 0.024 3.976 16 N -0.362 5.362 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.262 4.262 20 N -0.607 5.607 21 Si 0.809 3.191 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.201 1.201 25 C 0.011 3.989 26 C -0.011 4.011 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.291 0.709 31 H 0.237 0.763 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.044 14.006 -13.951 21.342 hybrid contribution -1.985 -0.610 0.644 2.175 sum 6.059 13.396 -13.306 19.830 Atomic orbital electron populations 1.22290 0.74210 1.05453 1.05182 1.45799 1.09148 1.05493 1.52261 1.20354 0.84317 0.82083 1.02817 1.84780 1.86733 1.16394 1.36582 1.70381 1.16967 1.13157 1.23357 1.23233 0.95860 0.89959 1.00280 1.20450 0.92215 0.87561 1.21052 1.16884 0.83147 0.83780 0.77841 1.90814 1.22705 1.82854 1.49203 1.47842 1.25021 1.05853 1.54130 1.23169 0.86959 1.02739 0.92870 1.23152 1.03040 0.80919 0.96470 1.87898 1.36885 1.23967 1.78931 1.23114 0.85642 0.96788 0.90914 1.22536 0.93271 0.87485 0.94335 1.46170 1.64721 1.08444 1.16819 1.19424 1.28582 0.93305 0.94772 0.89436 1.25664 1.01296 0.97584 1.01668 1.70040 1.44619 1.12911 1.33136 0.85105 0.77999 0.77416 0.78543 1.19978 1.22199 1.20138 1.22723 0.95158 0.92347 0.88645 1.22054 1.03694 0.78984 0.96389 0.88491 0.91034 0.86501 0.70894 0.76308 0.85986 0.86184 0.84572 0.95701 0.94590 0.97189 0.94509 0.90844 0.91275 0.89395 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 10.41 127.77 1.33 2.66 16 2 N -0.43 -9.88 3.20 -651.99 -2.09 -11.97 16 3 C 0.40 8.47 9.01 179.99 1.62 10.09 16 4 O -0.44 -6.42 13.44 -84.84 -1.14 -7.56 16 5 N -0.51 -11.66 11.22 -313.65 -3.52 -15.18 16 6 C 0.06 1.25 9.49 84.13 0.80 2.05 16 7 C -0.10 -2.42 6.41 39.80 0.26 -2.17 16 8 C 0.59 17.79 7.51 86.36 0.65 18.44 16 9 O -0.58 -20.98 15.36 -4.47 -0.07 -21.05 16 10 N -0.60 -16.29 3.03 -823.71 -2.50 -18.78 16 11 C 0.06 1.31 5.25 86.34 0.45 1.77 16 12 C 0.04 1.16 6.88 72.06 0.50 1.66 16 13 O -0.36 -13.09 10.52 -148.98 -1.57 -14.65 16 14 C 0.08 2.92 1.21 -10.64 -0.01 2.91 16 15 C 0.15 7.56 6.64 86.30 0.57 8.13 16 16 N -0.64 -33.89 3.70 -729.26 -2.70 -36.59 16 17 C -0.23 -13.51 10.70 84.03 0.90 -12.61 16 18 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.96 -60.33 11.39 21.65 0.25 -60.08 16 21 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 C 0.14 5.47 8.33 86.30 0.72 6.19 16 26 C 0.11 3.34 5.77 86.04 0.50 3.84 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.75 7.59 -2.38 -0.02 1.73 16 29 H 0.12 1.56 8.02 -2.39 -0.02 1.54 16 30 H 0.43 1.37 9.06 -74.06 -0.67 0.69 16 31 H 0.22 2.91 6.24 -2.91 -0.02 2.89 16 32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.12 2.11 4.36 -2.39 -0.01 2.10 16 34 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 36 H 0.04 2.08 6.31 -2.39 -0.02 2.06 16 37 H 0.01 0.56 7.92 -2.39 -0.02 0.54 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 40 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.09 2.96 6.86 -2.39 -0.02 2.95 16 42 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -84.40 344.34 -2.16 -86.56 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.41 Total: 10.90 kcal Atomic # 6 Polarization: 30.55 SS G_CDS: 8.74 Total: 39.29 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -10.56 Total: -142.61 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.78 Total: -43.26 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -84.40 -2.16 -86.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053375081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.852 kcal (2) G-P(sol) polarization free energy of solvation -84.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds