Wall clock time and date at job start Fri Apr 10 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.63960 * 2 1 4 4 C 1.54334 * 110.84757 * 236.83647 * 2 1 3 5 5 N 1.47025 * 107.26451 * 219.67053 * 4 2 1 6 6 C 1.34777 * 125.65002 * 178.85167 * 5 4 2 7 7 O 1.21282 * 119.99729 * 359.71419 * 6 5 4 8 8 C 1.50695 * 120.00195 * 179.71871 * 6 5 4 9 9 N 1.46496 * 109.47495 * 179.97438 * 8 6 5 10 10 C 1.36165 * 119.85885 * 89.99124 * 9 8 6 11 11 C 1.35541 * 119.26347 * 180.02562 * 10 9 8 12 12 C 1.40743 * 118.99569 * 0.02562 * 11 10 9 13 13 O 1.35158 * 120.16363 * 179.97438 * 12 11 10 14 14 N 1.32425 * 119.67100 * 0.24648 * 12 11 10 15 15 C 1.33276 * 120.72742 * 359.51262 * 14 12 11 16 16 O 1.21975 * 119.47097 * 180.25893 * 15 14 12 17 17 C 1.47428 * 108.70179 * 358.58341 * 5 4 2 18 18 C 1.54906 * 104.83105 * 24.35984 * 17 5 4 19 19 H 1.08995 * 111.01032 * 81.06157 * 18 17 5 20 20 N 1.46506 * 111.00162 * 204.91573 * 18 17 5 21 21 C 1.36941 * 119.99733 * 273.54181 * 20 18 17 22 22 H 1.07995 * 119.99759 * 0.02562 * 21 20 18 23 23 C 1.38806 * 119.99896 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00278 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99983 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.46811 * 89.99698 * 25 23 21 27 27 H 1.48499 * 109.47105 * 209.99728 * 25 23 21 28 28 H 1.48500 * 109.47222 * 329.99985 * 25 23 21 29 29 H 1.08998 * 109.46921 * 296.85439 * 1 2 3 30 30 H 1.08998 * 109.47387 * 56.86189 * 1 2 3 31 31 H 1.09004 * 109.46922 * 176.86169 * 1 2 3 32 32 H 1.09004 * 109.99209 * 100.19807 * 4 2 1 33 33 H 1.08994 * 109.78100 * 339.02395 * 4 2 1 34 34 H 1.08999 * 109.47622 * 59.99815 * 8 6 5 35 35 H 1.09001 * 109.47232 * 299.99621 * 8 6 5 36 36 H 1.08001 * 120.36785 * 0.02974 * 10 9 8 37 37 H 1.07994 * 120.50296 * 180.02562 * 11 10 9 38 38 H 0.96700 * 114.00146 * 179.97438 * 13 12 11 39 39 H 1.08999 * 110.36214 * 143.19534 * 17 5 4 40 40 H 1.08999 * 110.36745 * 265.40305 * 17 5 4 41 41 H 0.96995 * 119.99901 * 93.54534 * 20 18 17 42 42 H 0.96993 * 120.00211 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0792 -0.7890 -1.2074 5 7 3.2445 -1.5519 -0.7365 6 6 3.9923 -2.3860 -1.4858 7 8 3.7192 -2.5607 -2.6545 8 6 5.1677 -3.1016 -0.8716 9 7 5.8112 -3.9423 -1.8841 10 6 6.8129 -3.4318 -2.6522 11 6 7.3995 -4.2201 -3.5858 12 6 6.9548 -5.5471 -3.7352 13 8 7.5227 -6.3537 -4.6591 14 7 5.9735 -5.9997 -2.9697 15 6 5.4084 -5.2154 -2.0523 16 8 4.5094 -5.6574 -1.3564 17 6 3.4633 -1.2485 0.6895 18 6 2.0790 -0.7934 1.2151 19 1 1.4452 -1.6511 1.4402 20 7 2.2216 0.0737 2.3873 21 6 2.3176 -0.4760 3.6379 22 1 2.2886 -1.5486 3.7599 23 6 2.4531 0.3455 4.7485 24 7 2.5449 -0.1827 5.9506 25 14 2.5040 2.2009 4.5374 26 1 1.1244 2.7455 4.6122 27 1 3.3316 2.7993 5.6154 28 1 3.0962 2.5327 3.2166 29 1 -0.3633 0.4642 0.9168 30 1 -0.3634 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 2.3813 -0.1002 -1.9964 33 1 1.3155 -1.4713 -1.5804 34 1 4.8228 -3.7259 -0.0473 35 1 5.8839 -2.3697 -0.4980 36 1 7.1365 -2.4100 -2.5190 37 1 8.1961 -3.8359 -4.2056 38 1 7.1497 -7.2455 -4.6852 39 1 3.7961 -2.1405 1.2204 40 1 4.1947 -0.4478 0.7991 41 1 2.2479 1.0371 2.2777 42 1 2.6393 0.3913 6.7267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054871979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:51 Heat of formation + Delta-G solvation = -35.689046 kcal Electronic energy + Delta-G solvation = -27170.470604 eV Core-core repulsion = 23152.580984 eV Total energy + Delta-G solvation = -4017.889619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.05641 -40.05659 -38.94243 -37.79976 -36.84485 -34.76146 -34.34347 -32.76778 -31.55973 -31.15190 -28.87921 -28.04051 -26.09773 -25.01713 -23.97397 -23.45066 -21.55262 -20.30221 -20.01388 -19.64977 -18.40444 -17.81757 -17.52808 -17.30695 -16.22271 -16.16841 -15.88245 -15.37124 -14.96000 -14.90016 -14.38897 -14.27124 -14.18780 -13.60416 -13.53463 -13.41452 -13.34430 -13.14251 -12.77042 -12.49706 -12.19128 -12.05588 -11.92729 -11.51546 -11.24437 -10.98909 -10.91034 -10.76040 -10.60453 -10.46304 -10.09114 -10.06120 -9.98936 -9.73159 -9.15519 -8.83448 -8.61683 -7.49335 -5.92149 -3.31350 0.39173 1.45213 2.01512 2.44749 2.88125 2.95103 3.24746 3.28319 3.35195 3.60163 3.95218 4.19725 4.27566 4.44254 4.46018 4.73729 4.76601 4.86249 4.97404 4.98141 5.04631 5.14688 5.29769 5.43256 5.53830 5.60236 5.65060 5.73663 5.77800 5.96747 6.01198 6.08788 6.13741 6.21059 6.26137 6.39322 6.64030 6.74211 7.45647 7.56606 7.81164 7.95776 8.00885 8.26079 9.02145 9.73917 9.91419 11.25268 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002858 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.386873 B = 9794.867063 C =10395.684789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 H 0.083 0.917 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.516 3.484 7 O -0.542 6.542 8 C 0.079 3.921 9 N -0.510 5.510 10 C 0.214 3.786 11 C -0.289 4.289 12 C 0.458 3.542 13 O -0.449 6.449 14 N -0.613 5.613 15 C 0.660 3.340 16 O -0.526 6.526 17 C 0.066 3.934 18 C 0.183 3.817 19 H 0.076 0.924 20 N -0.734 5.734 21 C -0.256 4.256 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.927 5.927 25 Si 0.884 3.116 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.417 0.583 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.364 0.636 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 -2.632 -19.485 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 H 0.101 0.899 4 C -0.004 4.004 5 N -0.341 5.341 6 C 0.302 3.698 7 O -0.419 6.419 8 C -0.047 4.047 9 N -0.226 5.226 10 C 0.078 3.922 11 C -0.315 4.315 12 C 0.256 3.744 13 O -0.244 6.244 14 N -0.370 5.370 15 C 0.362 3.638 16 O -0.400 6.400 17 C -0.059 4.059 18 C 0.071 3.929 19 H 0.094 0.906 20 N -0.375 5.375 21 C -0.385 4.385 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.573 5.573 25 Si 0.714 3.286 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.203 1.203 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.199 0.801 37 H 0.182 0.818 38 H 0.274 0.726 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.198 0.802 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.267 -3.562 -19.513 21.894 hybrid contribution 0.230 1.629 0.077 1.647 sum 9.498 -1.933 -19.436 21.719 Atomic orbital electron populations 1.21693 0.93578 1.02095 1.02086 1.22524 0.96822 0.99620 0.94615 0.89864 1.22002 0.87401 0.94293 0.96746 1.48436 1.29807 1.43344 1.12520 1.20179 0.83983 0.79285 0.86315 1.90730 1.70954 1.63879 1.16376 1.21837 0.95585 0.95715 0.91593 1.46067 1.30344 1.13837 1.32319 1.22342 0.84195 0.99166 0.86454 1.20564 1.10632 0.92796 1.07542 1.20420 0.83713 0.88006 0.82249 1.84977 1.59014 1.28610 1.51795 1.69652 1.17221 1.35794 1.14357 1.17272 0.84237 0.78429 0.83841 1.91034 1.29895 1.72468 1.46571 1.23586 1.02721 1.01358 0.78244 1.21323 0.91929 0.93807 0.85851 0.90577 1.42642 1.88574 1.03886 1.02437 1.19054 1.43762 0.94059 0.81625 0.88926 1.24687 1.01335 0.97421 0.95097 1.69694 1.55825 1.34314 0.97503 0.86585 0.77889 0.87117 0.77057 1.20917 1.21643 1.20285 0.91342 0.92982 0.92432 0.91704 0.91250 0.84574 0.85570 0.80077 0.81770 0.72645 0.90457 0.90765 0.80197 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.16 37.16 0.34 -1.38 16 2 C -0.12 -1.57 3.16 -88.78 -0.28 -1.85 16 3 H 0.08 1.09 7.99 -51.93 -0.42 0.68 16 4 C 0.12 1.57 6.48 -3.06 -0.02 1.55 16 5 N -0.61 -8.47 3.33 -170.51 -0.57 -9.04 16 6 C 0.52 7.44 7.92 -10.99 -0.09 7.35 16 7 O -0.54 -9.58 16.76 5.56 0.09 -9.49 16 8 C 0.08 0.89 4.83 -5.20 -0.03 0.86 16 9 N -0.51 -6.08 2.08 -123.16 -0.26 -6.34 16 10 C 0.21 1.65 10.40 -16.59 -0.17 1.47 16 11 C -0.29 -2.15 10.03 -39.60 -0.40 -2.55 16 12 C 0.46 4.54 7.91 -16.35 -0.13 4.41 16 13 O -0.45 -3.16 13.55 -17.17 -0.23 -3.39 16 14 N -0.61 -8.61 10.40 -16.72 -0.17 -8.78 16 15 C 0.66 10.56 8.34 -88.43 -0.74 9.82 16 16 O -0.53 -10.53 16.72 4.94 0.08 -10.45 16 17 C 0.07 0.96 6.38 -2.53 -0.02 0.95 16 18 C 0.18 3.04 3.14 -65.78 -0.21 2.83 16 19 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 20 N -0.73 -15.13 5.08 -51.35 -0.26 -15.40 16 21 C -0.26 -6.52 10.47 -15.06 -0.16 -6.68 16 22 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 23 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 24 N -0.93 -27.48 13.97 55.49 0.78 -26.71 16 25 Si 0.88 20.38 27.74 -169.99 -4.71 15.66 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -5.88 6.52 56.52 0.37 -5.51 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.96 7.77 -51.93 -0.40 0.55 16 34 H 0.14 1.67 7.09 -51.93 -0.37 1.31 16 35 H 0.13 0.87 8.03 -51.93 -0.42 0.46 16 36 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.42 1.55 8.98 45.56 0.41 1.96 16 39 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.36 7.39 5.57 -40.82 -0.23 7.16 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -37.65 358.13 -6.62 -44.26 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.77 Total: 7.26 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: -1.98 Total: 17.01 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -0.48 Total: -66.26 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.71 Total: 15.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.65 -6.62 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054871979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds