Wall clock time and date at job start Fri Apr 10 2020 18:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.63960 * 2 1 4 4 C 1.54334 * 110.84757 * 236.83647 * 2 1 3 5 5 N 1.47025 * 107.26451 * 219.67053 * 4 2 1 6 6 C 1.34777 * 125.65002 * 178.85167 * 5 4 2 7 7 O 1.21282 * 119.99729 * 359.71419 * 6 5 4 8 8 C 1.50695 * 120.00195 * 179.71871 * 6 5 4 9 9 N 1.46496 * 109.47495 * 179.97438 * 8 6 5 10 10 C 1.36165 * 119.85885 * 89.99124 * 9 8 6 11 11 C 1.35541 * 119.26347 * 180.02562 * 10 9 8 12 12 C 1.40743 * 118.99569 * 0.02562 * 11 10 9 13 13 O 1.35158 * 120.16363 * 179.97438 * 12 11 10 14 14 N 1.32425 * 119.67100 * 0.24648 * 12 11 10 15 15 C 1.33276 * 120.72742 * 359.51262 * 14 12 11 16 16 O 1.21975 * 119.47097 * 180.25893 * 15 14 12 17 17 C 1.47428 * 108.70179 * 358.58341 * 5 4 2 18 18 C 1.54906 * 104.83105 * 24.35984 * 17 5 4 19 19 H 1.08995 * 111.01032 * 81.06157 * 18 17 5 20 20 N 1.46506 * 111.00162 * 204.91573 * 18 17 5 21 21 C 1.36941 * 119.99733 * 273.54181 * 20 18 17 22 22 H 1.07995 * 119.99759 * 0.02562 * 21 20 18 23 23 C 1.38806 * 119.99896 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00278 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99983 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.46811 * 89.99698 * 25 23 21 27 27 H 1.48499 * 109.47105 * 209.99728 * 25 23 21 28 28 H 1.48500 * 109.47222 * 329.99985 * 25 23 21 29 29 H 1.08998 * 109.46921 * 296.85439 * 1 2 3 30 30 H 1.08998 * 109.47387 * 56.86189 * 1 2 3 31 31 H 1.09004 * 109.46922 * 176.86169 * 1 2 3 32 32 H 1.09004 * 109.99209 * 100.19807 * 4 2 1 33 33 H 1.08994 * 109.78100 * 339.02395 * 4 2 1 34 34 H 1.08999 * 109.47622 * 59.99815 * 8 6 5 35 35 H 1.09001 * 109.47232 * 299.99621 * 8 6 5 36 36 H 1.08001 * 120.36785 * 0.02974 * 10 9 8 37 37 H 1.07994 * 120.50296 * 180.02562 * 11 10 9 38 38 H 0.96700 * 114.00146 * 179.97438 * 13 12 11 39 39 H 1.08999 * 110.36214 * 143.19534 * 17 5 4 40 40 H 1.08999 * 110.36745 * 265.40305 * 17 5 4 41 41 H 0.96995 * 119.99901 * 93.54534 * 20 18 17 42 42 H 0.96993 * 120.00211 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0792 -0.7890 -1.2074 5 7 3.2445 -1.5519 -0.7365 6 6 3.9923 -2.3860 -1.4858 7 8 3.7192 -2.5607 -2.6545 8 6 5.1677 -3.1016 -0.8716 9 7 5.8112 -3.9423 -1.8841 10 6 6.8129 -3.4318 -2.6522 11 6 7.3995 -4.2201 -3.5858 12 6 6.9548 -5.5471 -3.7352 13 8 7.5227 -6.3537 -4.6591 14 7 5.9735 -5.9997 -2.9697 15 6 5.4084 -5.2154 -2.0523 16 8 4.5094 -5.6574 -1.3564 17 6 3.4633 -1.2485 0.6895 18 6 2.0790 -0.7934 1.2151 19 1 1.4452 -1.6511 1.4402 20 7 2.2216 0.0737 2.3873 21 6 2.3176 -0.4760 3.6379 22 1 2.2886 -1.5486 3.7599 23 6 2.4531 0.3455 4.7485 24 7 2.5449 -0.1827 5.9506 25 14 2.5040 2.2009 4.5374 26 1 1.1244 2.7455 4.6122 27 1 3.3316 2.7993 5.6154 28 1 3.0962 2.5327 3.2166 29 1 -0.3633 0.4642 0.9168 30 1 -0.3634 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 2.3813 -0.1002 -1.9964 33 1 1.3155 -1.4713 -1.5804 34 1 4.8228 -3.7259 -0.0473 35 1 5.8839 -2.3697 -0.4980 36 1 7.1365 -2.4100 -2.5190 37 1 8.1961 -3.8359 -4.2056 38 1 7.1497 -7.2455 -4.6852 39 1 3.7961 -2.1405 1.2204 40 1 4.1947 -0.4478 0.7991 41 1 2.2479 1.0371 2.2777 42 1 2.6393 0.3913 6.7267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054871979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:49 Heat of formation + Delta-G solvation = -68.867757 kcal Electronic energy + Delta-G solvation = -27171.909340 eV Core-core repulsion = 23152.580984 eV Total energy + Delta-G solvation = -4019.328356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95071 -41.17405 -39.75485 -39.01770 -37.84628 -35.99633 -35.62199 -34.09141 -32.93429 -32.34108 -29.82858 -29.46151 -27.09085 -25.82264 -25.60958 -24.40953 -22.94178 -21.61737 -20.80011 -20.74527 -19.51237 -19.14934 -18.65826 -18.30820 -17.40066 -17.20066 -16.89684 -16.42003 -16.36013 -15.89028 -15.59855 -15.24124 -14.93217 -14.84726 -14.80500 -14.58658 -14.42315 -14.30956 -14.18588 -13.62951 -13.34824 -13.18719 -13.06431 -12.96588 -12.90885 -12.28162 -12.07726 -12.07355 -11.94865 -11.79003 -11.50433 -11.38809 -11.09102 -11.00417 -10.95196 -9.81569 -9.71309 -9.33107 -7.99024 -5.35445 -0.33271 0.64923 1.14914 1.34514 1.42881 1.47084 1.54162 1.89204 2.24832 2.52215 2.64943 3.16335 3.25276 3.30563 3.54267 3.64652 3.66580 3.75156 3.82778 4.04139 4.07495 4.13495 4.32696 4.39009 4.41203 4.52217 4.56970 4.65573 4.83604 4.88403 5.04202 5.07090 5.10267 5.17965 5.29022 5.30630 5.43546 5.80198 6.14069 6.23500 6.32351 6.62921 6.87862 7.00684 7.09638 7.81904 8.02524 9.21937 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002858 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.386873 B = 9794.867063 C =10395.684789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 H 0.099 0.901 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.515 3.485 7 O -0.576 6.576 8 C 0.082 3.918 9 N -0.513 5.513 10 C 0.213 3.787 11 C -0.281 4.281 12 C 0.456 3.544 13 O -0.439 6.439 14 N -0.656 5.656 15 C 0.649 3.351 16 O -0.593 6.593 17 C 0.079 3.921 18 C 0.170 3.830 19 H 0.054 0.946 20 N -0.732 5.732 21 C -0.231 4.231 22 H 0.057 0.943 23 C -0.060 4.060 24 N -0.983 5.983 25 Si 0.953 3.047 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.240 1.240 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.178 0.822 36 H 0.236 0.764 37 H 0.205 0.795 38 H 0.430 0.570 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.371 0.629 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.129 0.161 -22.237 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 H 0.117 0.883 4 C -0.004 4.004 5 N -0.339 5.339 6 C 0.303 3.697 7 O -0.457 6.457 8 C -0.044 4.044 9 N -0.228 5.228 10 C 0.080 3.920 11 C -0.306 4.306 12 C 0.258 3.742 13 O -0.235 6.235 14 N -0.415 5.415 15 C 0.351 3.649 16 O -0.472 6.472 17 C -0.046 4.046 18 C 0.060 3.940 19 H 0.072 0.928 20 N -0.375 5.375 21 C -0.362 4.362 22 H 0.075 0.925 23 C -0.251 4.251 24 N -0.633 5.633 25 Si 0.781 3.219 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.164 1.164 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.196 0.804 36 H 0.252 0.748 37 H 0.222 0.778 38 H 0.289 0.711 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.206 0.794 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.411 -0.759 -22.392 25.143 hybrid contribution -0.380 0.616 0.771 1.058 sum 11.031 -0.143 -21.621 24.273 Atomic orbital electron populations 1.21689 0.92954 1.02116 1.02570 1.22451 0.97327 0.99803 0.92559 0.88256 1.22044 0.87093 0.94314 0.96934 1.48435 1.29936 1.43398 1.12082 1.20671 0.84443 0.78708 0.85862 1.90711 1.72069 1.64894 1.17985 1.21970 0.95765 0.95963 0.90716 1.45937 1.31123 1.12746 1.32974 1.23296 0.82325 1.01281 0.85124 1.21101 1.10796 0.91340 1.07335 1.20853 0.82556 0.89355 0.81485 1.84982 1.58438 1.29478 1.50576 1.69497 1.19498 1.36891 1.15632 1.17494 0.83947 0.79727 0.83746 1.90964 1.32947 1.74158 1.49166 1.23299 1.01209 1.01706 0.78431 1.21454 0.93273 0.93333 0.85907 0.92804 1.42484 1.88752 1.04524 1.01754 1.18956 1.41020 0.92565 0.83687 0.92504 1.25494 1.02317 1.02683 0.94640 1.69889 1.58738 1.36122 0.98581 0.85446 0.77687 0.80576 0.78230 1.20937 1.22875 1.16442 0.92637 0.90391 0.93016 0.89947 0.92106 0.86245 0.80435 0.74821 0.77795 0.71072 0.90824 0.89085 0.79429 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.16 71.98 0.66 -2.49 16 2 C -0.10 -2.50 3.16 -9.60 -0.03 -2.53 16 3 H 0.10 2.20 7.99 -2.39 -0.02 2.18 16 4 C 0.12 2.89 6.48 86.73 0.56 3.45 16 5 N -0.61 -15.74 3.33 -811.77 -2.70 -18.44 16 6 C 0.52 14.05 7.92 87.66 0.69 14.75 16 7 O -0.58 -19.75 16.76 -3.04 -0.05 -19.80 16 8 C 0.08 1.70 4.83 85.63 0.41 2.11 16 9 N -0.51 -11.49 2.08 -661.79 -1.38 -12.86 16 10 C 0.21 2.46 10.40 83.40 0.87 3.33 16 11 C -0.28 -3.15 10.03 22.26 0.22 -2.92 16 12 C 0.46 8.29 7.91 85.22 0.67 8.97 16 13 O -0.44 -5.29 13.55 -84.36 -1.14 -6.43 16 14 N -0.66 -18.65 10.40 -438.81 -4.56 -23.21 16 15 C 0.65 21.25 8.34 179.58 1.50 22.75 16 16 O -0.59 -25.32 16.72 -5.23 -0.09 -25.41 16 17 C 0.08 2.13 6.38 86.85 0.55 2.69 16 18 C 0.17 5.49 3.14 46.38 0.15 5.64 16 19 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 20 N -0.73 -29.19 5.08 -316.38 -1.61 -30.80 16 21 C -0.23 -11.93 10.47 84.03 0.88 -11.05 16 22 H 0.06 3.29 8.06 -2.91 -0.02 3.26 16 23 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 24 N -0.98 -60.10 13.97 21.65 0.30 -59.80 16 25 Si 0.95 41.47 27.74 68.60 1.90 43.37 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 27 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.24 -8.91 6.52 99.48 0.65 -8.26 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.06 1.60 7.77 -2.39 -0.02 1.58 16 34 H 0.12 2.97 7.09 -2.39 -0.02 2.96 16 35 H 0.18 1.72 8.03 -2.39 -0.02 1.70 16 36 H 0.24 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 38 H 0.43 2.70 8.98 -74.06 -0.66 2.04 16 39 H 0.07 2.07 7.48 -2.39 -0.02 2.05 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.37 13.92 5.57 -92.71 -0.52 13.40 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -88.27 358.13 -1.89 -90.16 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.17 Total: 21.33 kcal Atomic # 6 Polarization: 34.28 SS G_CDS: 7.61 Total: 41.88 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -9.95 Total: -145.11 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -1.28 Total: -51.64 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.90 Total: 43.37 kcal Total: -88.27 -1.89 -90.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054871979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.293 kcal (2) G-P(sol) polarization free energy of solvation -88.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds