Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.88410 * 2 1 4 4 C 1.55132 * 110.93987 * 124.07214 * 2 1 3 5 5 N 1.47419 * 104.72222 * 155.29314 * 4 2 1 6 6 C 1.34775 * 125.64724 * 155.81517 * 5 4 2 7 7 O 1.21275 * 120.00347 * 359.72394 * 6 5 4 8 8 C 1.50701 * 119.99836 * 179.71259 * 6 5 4 9 9 N 1.46502 * 109.47060 * 179.97438 * 8 6 5 10 10 C 1.36154 * 119.85811 * 269.98133 * 9 8 6 11 11 C 1.35549 * 119.26166 * 179.97438 * 10 9 8 12 12 C 1.40738 * 118.99587 * 0.02562 * 11 10 9 13 13 O 1.35156 * 120.16533 * 179.97438 * 12 11 10 14 14 N 1.32425 * 119.66867 * 0.02562 * 12 11 10 15 15 C 1.33270 * 120.73440 * 359.97438 * 14 12 11 16 16 O 1.21971 * 119.48026 * 180.27860 * 15 14 12 17 17 C 1.47027 * 108.70306 * 335.55220 * 5 4 2 18 18 C 1.54318 * 107.27011 * 1.28975 * 17 5 4 19 19 H 1.09001 * 110.71743 * 263.64978 * 18 17 5 20 20 N 1.46507 * 110.72211 * 140.55564 * 18 17 5 21 21 C 1.36934 * 119.99842 * 86.45126 * 20 18 17 22 22 H 1.07991 * 120.00079 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99746 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99840 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99930 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47217 * 59.99871 * 25 23 21 27 27 H 1.48505 * 109.46975 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47242 * 299.99502 * 25 23 21 29 29 H 1.09008 * 109.46523 * 183.88130 * 1 2 3 30 30 H 1.08994 * 109.47542 * 303.87924 * 1 2 3 31 31 H 1.08998 * 109.47450 * 63.88795 * 1 2 3 32 32 H 1.09001 * 110.49397 * 36.44927 * 4 2 1 33 33 H 1.08997 * 110.33967 * 274.05843 * 4 2 1 34 34 H 1.09006 * 109.46963 * 60.00492 * 8 6 5 35 35 H 1.08991 * 109.47550 * 300.00716 * 8 6 5 36 36 H 1.08004 * 120.37426 * 359.97438 * 10 9 8 37 37 H 1.07997 * 120.50394 * 179.97438 * 11 10 9 38 38 H 0.96697 * 114.00198 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.87890 * 120.70265 * 17 5 4 40 40 H 1.08991 * 109.88318 * 241.71452 * 17 5 4 41 41 H 0.97002 * 119.99672 * 266.45626 * 20 18 17 42 42 H 0.97003 * 119.99704 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0844 -0.8117 1.2001 5 7 3.4281 -1.2420 0.7727 6 6 4.4490 -1.5600 1.5930 7 8 4.3026 -1.4987 2.7953 8 6 5.7726 -1.9920 1.0162 9 7 6.7095 -2.2791 2.1053 10 6 7.5041 -1.2877 2.5949 11 6 8.3662 -1.5666 3.6030 12 6 8.4157 -2.8764 4.1156 13 8 9.2669 -3.1808 5.1203 14 7 7.6248 -3.8094 3.6079 15 6 6.7816 -3.5219 2.6167 16 8 6.0599 -4.3976 2.1696 17 6 3.4679 -1.2730 -0.6967 18 6 2.0863 -0.8075 -1.2024 19 1 1.4484 -1.6632 -1.4240 20 7 2.2278 0.0502 -2.3817 21 6 2.3025 -0.5085 -3.6297 22 1 2.2574 -1.5814 -3.7445 23 6 2.4372 0.3041 -4.7470 24 7 2.4926 1.6116 -4.6069 25 14 2.5397 -0.4581 -6.4493 26 1 1.3038 -1.2362 -6.7185 27 1 2.6787 0.6163 -7.4651 28 1 3.7174 -1.3600 -6.5177 29 1 -0.3633 -1.0254 0.0696 30 1 -0.3634 0.5728 0.8531 31 1 -0.3634 0.4523 -0.9227 32 1 1.4538 -1.6783 1.3987 33 1 2.1523 -0.1800 2.0858 34 1 6.1749 -1.1938 0.3923 35 1 5.6307 -2.8884 0.4127 36 1 7.4481 -0.2902 2.1846 37 1 9.0060 -0.7957 4.0062 38 1 9.2269 -4.1045 5.4035 39 1 4.2426 -0.5981 -1.0608 40 1 3.6687 -2.2875 -1.0408 41 1 2.2688 1.0138 -2.2784 42 1 2.5864 2.1795 -5.3877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054871980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = -40.367028 kcal Electronic energy + Delta-G solvation = -27118.336371 eV Core-core repulsion = 23100.243899 eV Total energy + Delta-G solvation = -4018.092472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03349 -39.97302 -38.91237 -37.69296 -36.82593 -34.73439 -34.20567 -32.69199 -31.52664 -30.82140 -28.82884 -27.61975 -26.01929 -24.98697 -24.11126 -23.45251 -21.69616 -20.08995 -19.99680 -19.56613 -18.37871 -17.64148 -17.29610 -17.17475 -16.17090 -16.07317 -15.83850 -15.34006 -14.98685 -14.88317 -14.41241 -14.17744 -14.03974 -13.67063 -13.55451 -13.41195 -13.18091 -12.85350 -12.69828 -12.38376 -12.16436 -12.07625 -11.66142 -11.22770 -11.09171 -10.98128 -10.83619 -10.70466 -10.57904 -10.36399 -10.07652 -10.05300 -9.95276 -9.80160 -9.09932 -8.81146 -8.52656 -7.20054 -5.94058 -3.25526 0.41525 1.47045 2.04718 2.51210 2.90104 3.02412 3.34175 3.39925 3.40168 3.62118 3.98262 4.23554 4.34658 4.46259 4.50495 4.77119 4.88132 4.98742 5.03764 5.07520 5.11162 5.18425 5.46628 5.52512 5.64120 5.71741 5.78847 5.79840 5.90761 6.09575 6.11113 6.14625 6.24232 6.35156 6.38808 6.52040 6.75523 6.75603 7.52801 7.56379 7.58678 7.97134 8.06540 8.23250 9.35575 9.87925 10.22961 11.27524 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002882 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.230000 B = 9713.412578 C =10597.414146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.544 6.544 8 C 0.079 3.921 9 N -0.509 5.509 10 C 0.216 3.784 11 C -0.289 4.289 12 C 0.458 3.542 13 O -0.449 6.449 14 N -0.615 5.615 15 C 0.661 3.339 16 O -0.529 6.529 17 C 0.065 3.935 18 C 0.177 3.823 19 H 0.068 0.932 20 N -0.711 5.711 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.183 0.817 37 H 0.165 0.835 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.387 0.613 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 -2.398 15.075 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.339 5.339 6 C 0.302 3.698 7 O -0.422 6.422 8 C -0.047 4.047 9 N -0.225 5.225 10 C 0.080 3.920 11 C -0.316 4.316 12 C 0.257 3.743 13 O -0.244 6.244 14 N -0.372 5.372 15 C 0.363 3.637 16 O -0.403 6.403 17 C -0.060 4.060 18 C 0.065 3.935 19 H 0.086 0.914 20 N -0.351 5.351 21 C -0.382 4.382 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.200 0.800 37 H 0.183 0.817 38 H 0.273 0.727 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.222 0.778 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.446 -3.359 15.419 18.392 hybrid contribution 0.160 0.160 -1.099 1.122 sum 9.606 -3.198 14.319 17.537 Atomic orbital electron populations 1.21617 0.93728 1.01683 1.02185 1.22663 0.96470 0.99672 0.94391 0.89689 1.22357 0.82261 0.98291 0.97881 1.48467 1.11828 1.65342 1.08287 1.20161 0.85143 0.77944 0.86561 1.90723 1.83040 1.54050 1.14381 1.21836 0.88111 1.06014 0.88746 1.46060 1.32921 1.11028 1.32489 1.22373 0.85348 0.94086 0.90232 1.20571 1.09650 0.96870 1.04489 1.20418 0.82084 0.89614 0.82221 1.84979 1.55523 1.36742 1.47125 1.69633 1.15316 1.33492 1.18732 1.17258 0.83623 0.80873 0.81951 1.91015 1.43503 1.44872 1.60939 1.23504 1.03962 1.01645 0.76935 1.21237 0.91361 0.93964 0.86926 0.91392 1.42353 1.86938 1.05261 1.00508 1.19194 1.43534 0.91942 0.83551 0.90961 1.24762 1.02158 0.95346 0.98030 1.69646 1.56228 1.02301 1.29438 0.86271 0.78025 0.77887 0.83987 1.21103 1.21644 1.21096 0.92760 0.93110 0.91221 0.91370 0.90836 0.85499 0.84804 0.79977 0.81735 0.72689 0.90486 0.91804 0.77837 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.31 37.16 0.35 -1.43 16 2 C -0.11 -1.62 3.26 -88.35 -0.29 -1.91 16 3 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 4 C 0.11 1.61 6.38 -2.41 -0.02 1.60 16 5 N -0.61 -8.90 3.32 -170.39 -0.57 -9.46 16 6 C 0.52 7.76 7.92 -10.99 -0.09 7.68 16 7 O -0.54 -9.94 16.68 5.56 0.09 -9.85 16 8 C 0.08 0.93 5.02 -5.19 -0.03 0.91 16 9 N -0.51 -6.28 2.08 -123.16 -0.26 -6.54 16 10 C 0.22 1.78 10.40 -16.59 -0.17 1.61 16 11 C -0.29 -2.28 10.03 -39.60 -0.40 -2.68 16 12 C 0.46 4.66 7.91 -16.35 -0.13 4.53 16 13 O -0.45 -3.24 13.55 -17.17 -0.23 -3.48 16 14 N -0.61 -8.71 10.40 -16.72 -0.17 -8.88 16 15 C 0.66 10.66 8.34 -88.43 -0.74 9.92 16 16 O -0.53 -10.56 16.72 4.95 0.08 -10.48 16 17 C 0.07 0.99 6.24 -3.06 -0.02 0.98 16 18 C 0.18 3.04 3.05 -66.10 -0.20 2.84 16 19 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 20 N -0.71 -15.53 5.18 -51.65 -0.27 -15.80 16 21 C -0.25 -6.26 9.98 -15.06 -0.15 -6.42 16 22 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -25.91 13.06 55.49 0.72 -25.19 16 25 Si 0.91 20.90 29.55 -169.99 -5.02 15.87 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.05 0.67 8.07 -51.92 -0.42 0.25 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 33 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 34 H 0.13 1.01 8.03 -51.93 -0.42 0.59 16 35 H 0.13 1.66 7.39 -51.93 -0.38 1.28 16 36 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.42 1.60 8.98 45.56 0.41 2.01 16 39 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.39 9.10 7.71 -40.82 -0.31 8.79 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -36.04 362.15 -7.00 -43.04 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.87 Total: 7.94 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: -1.97 Total: 17.37 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.54 Total: -65.88 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.04 -7.00 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054871980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.673 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds