Wall clock time and date at job start Fri Apr 10 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.64098 * 2 1 4 4 C 1.54323 * 110.87498 * 236.75668 * 2 1 3 5 5 N 1.47286 * 107.30631 * 219.38159 * 4 2 1 6 6 C 1.34785 * 125.79355 * 178.92181 * 5 4 2 7 7 O 1.21664 * 119.99755 * 174.99903 * 6 5 4 8 8 C 1.46897 * 119.99608 * 355.00151 * 6 5 4 9 9 C 1.39432 * 120.81970 * 281.09722 * 8 6 5 10 10 N 1.32564 * 119.69784 * 179.97438 * 9 8 6 11 11 C 1.31846 * 121.61450 * 359.97438 * 10 9 8 12 12 O 1.34689 * 119.11214 * 180.02562 * 11 10 9 13 13 N 1.35651 * 121.77536 * 359.97438 * 11 10 9 14 14 C 1.46502 * 119.95623 * 180.02562 * 13 11 10 15 15 C 1.35020 * 120.09223 * 359.77011 * 13 11 10 16 16 O 1.21830 * 120.77261 * 180.24031 * 15 13 11 17 17 C 1.47423 * 108.55859 * 358.92310 * 5 4 2 18 18 C 1.54903 * 104.92870 * 24.15708 * 17 5 4 19 19 H 1.08998 * 111.00698 * 81.00973 * 18 17 5 20 20 N 1.46507 * 111.00631 * 204.86367 * 18 17 5 21 21 C 1.36937 * 119.99647 * 273.54660 * 20 18 17 22 22 H 1.07998 * 119.99960 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99945 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99544 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46869 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46909 * 120.00285 * 25 23 21 28 28 H 1.48494 * 109.46895 * 240.00412 * 25 23 21 29 29 H 1.08999 * 109.47250 * 296.85309 * 1 2 3 30 30 H 1.08996 * 109.47170 * 56.85809 * 1 2 3 31 31 H 1.09001 * 109.47053 * 176.85347 * 1 2 3 32 32 H 1.09001 * 109.87914 * 338.78610 * 4 2 1 33 33 H 1.08999 * 109.88582 * 99.79907 * 4 2 1 34 34 H 1.08003 * 120.15104 * 359.97438 * 9 8 6 35 35 H 0.96698 * 117.00492 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.46939 * 359.97438 * 14 13 11 37 37 H 1.09000 * 109.47616 * 119.99335 * 14 13 11 38 38 H 1.09005 * 109.46946 * 239.99751 * 14 13 11 39 39 H 1.09002 * 110.36693 * 265.26099 * 17 5 4 40 40 H 1.09003 * 110.36514 * 143.04815 * 17 5 4 41 41 H 0.96993 * 119.99860 * 93.53777 * 20 18 17 42 42 H 0.97001 * 119.99306 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2060 5 7 3.2516 -1.5488 -0.7353 6 6 4.0035 -2.3816 -1.4822 7 8 5.0047 -2.8859 -1.0095 8 6 3.6141 -2.6801 -2.8667 9 6 2.6036 -3.6006 -3.1420 10 7 2.2697 -3.8528 -4.3998 11 6 2.8707 -3.2524 -5.4081 12 8 2.4908 -3.5464 -6.6665 13 7 3.8607 -2.3459 -5.2123 14 6 4.5010 -1.7021 -6.3620 15 6 4.2532 -2.0322 -3.9591 16 8 5.1380 -1.2166 -3.7688 17 6 3.4652 -1.2446 0.6913 18 6 2.0790 -0.7934 1.2151 19 1 1.4470 -1.6530 1.4382 20 7 2.2175 0.0727 2.3886 21 6 2.3128 -0.4782 3.6386 22 1 2.2856 -1.5510 3.7594 23 6 2.4445 0.3424 4.7505 24 7 2.4772 1.6500 4.6031 25 14 2.5739 -0.4090 6.4558 26 1 2.5114 -1.8890 6.3506 27 1 3.8635 -0.0112 7.0754 28 1 1.4502 0.0759 7.2968 29 1 -0.3634 0.4642 0.9168 30 1 -0.3633 0.5618 -0.8604 31 1 -0.3633 -1.0261 -0.0564 32 1 1.3191 -1.4772 -1.5770 33 1 2.3750 -0.1015 -1.9974 34 1 2.0953 -4.1059 -2.3340 35 1 1.7824 -4.1962 -6.7708 36 1 4.0533 -2.0752 -7.2832 37 1 4.3592 -0.6231 -6.2999 38 1 5.5671 -1.9293 -6.3585 39 1 4.1930 -0.4408 0.8029 40 1 3.8002 -2.1352 1.2230 41 1 2.2417 1.0362 2.2800 42 1 2.5689 2.2233 5.3801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054965099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:15 Heat of formation + Delta-G solvation = -39.033827 kcal Electronic energy + Delta-G solvation = -27494.232456 eV Core-core repulsion = 23476.197797 eV Total energy + Delta-G solvation = -4018.034660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28918 -39.79830 -39.03876 -37.46825 -37.19041 -35.54078 -34.08122 -32.36290 -31.10555 -30.58859 -28.47251 -27.61369 -26.18022 -25.23081 -24.15107 -23.76192 -21.68892 -20.15940 -19.87576 -19.56096 -19.09224 -17.69853 -17.29101 -17.04250 -16.44763 -16.18933 -15.85183 -15.34199 -14.96027 -14.79931 -14.37145 -14.02361 -13.79981 -13.61227 -13.55704 -13.12803 -13.05891 -12.95062 -12.74101 -12.56497 -12.46350 -11.84942 -11.58151 -11.14007 -11.03991 -10.97826 -10.74513 -10.70952 -10.61181 -10.48753 -10.19232 -9.89025 -9.77801 -9.65281 -8.98127 -8.65595 -8.27508 -7.03962 -5.80909 -3.11203 0.14207 1.29898 1.45735 2.57301 3.00086 3.11243 3.36345 3.43644 3.50082 3.51725 3.68861 4.08555 4.53600 4.56728 4.70821 4.78800 4.87832 5.08384 5.09333 5.15424 5.26228 5.30009 5.49850 5.52168 5.68187 5.68976 5.86190 5.87624 5.98779 6.04855 6.20610 6.29339 6.44489 6.46154 6.55413 6.59852 6.66976 6.95196 7.20699 7.43068 7.69408 7.82401 8.36271 8.41308 9.48856 10.02202 10.37195 11.41204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.002864 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.139261 B = 9775.350777 C =10016.517237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.605 5.605 6 C 0.603 3.397 7 O -0.531 6.531 8 C -0.322 4.322 9 C 0.229 3.771 10 N -0.588 5.588 11 C 0.597 3.403 12 O -0.457 6.457 13 N -0.510 5.510 14 C 0.058 3.942 15 C 0.554 3.446 16 O -0.504 6.504 17 C 0.082 3.918 18 C 0.178 3.822 19 H 0.066 0.934 20 N -0.710 5.710 21 C -0.245 4.245 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.180 0.820 35 H 0.443 0.557 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.387 0.613 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -9.455 -26.620 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.011 4.011 5 N -0.338 5.338 6 C 0.388 3.612 7 O -0.407 6.407 8 C -0.333 4.333 9 C 0.085 3.915 10 N -0.329 5.329 11 C 0.298 3.702 12 O -0.255 6.255 13 N -0.239 5.239 14 C -0.083 4.083 15 C 0.353 3.647 16 O -0.378 6.378 17 C -0.043 4.043 18 C 0.066 3.934 19 H 0.084 0.916 20 N -0.350 5.350 21 C -0.376 4.376 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.197 0.803 35 H 0.306 0.694 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.221 0.779 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.194 -9.463 -26.434 28.388 hybrid contribution 0.296 0.110 0.867 0.923 sum -3.898 -9.353 -25.567 27.502 Atomic orbital electron populations 1.21665 0.93843 1.01503 1.02087 1.22465 0.96368 0.99972 0.94508 0.89654 1.22081 0.87314 0.94369 0.97330 1.48499 1.29697 1.43148 1.12451 1.16724 0.82421 0.78652 0.83372 1.90812 1.24833 1.52323 1.72761 1.21537 1.06993 1.09597 0.95200 1.22795 0.88032 0.88612 0.92018 1.68382 1.32833 1.32038 0.99669 1.20230 0.81950 0.82263 0.85729 1.84127 1.57735 1.62927 1.20747 1.46457 1.30919 1.35326 1.11175 1.22228 0.99764 0.99671 0.86649 1.16767 0.84102 0.83626 0.80185 1.90991 1.30420 1.34282 1.82102 1.23466 1.01809 1.01133 0.77892 1.21381 0.91903 0.93591 0.86564 0.91631 1.42296 1.86871 1.05119 1.00710 1.19292 1.42767 0.91969 0.83560 0.90880 1.24763 1.02419 0.95353 0.98036 1.69674 1.56793 1.02033 1.29243 0.86109 0.77240 0.78261 0.84527 1.20421 1.21796 1.21841 0.91218 0.93316 0.92844 0.91851 0.92309 0.80336 0.69441 0.88045 0.89376 0.89434 0.91317 0.90945 0.77850 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.17 37.16 0.34 -1.44 16 2 C -0.11 -1.76 3.16 -88.79 -0.28 -2.04 16 3 H 0.09 1.40 8.00 -51.92 -0.42 0.98 16 4 C 0.11 1.59 6.10 -2.92 -0.02 1.57 16 5 N -0.60 -10.48 3.34 -171.77 -0.57 -11.05 16 6 C 0.60 10.99 6.90 -12.75 -0.09 10.90 16 7 O -0.53 -11.85 17.40 5.22 0.09 -11.76 16 8 C -0.32 -4.58 4.87 -104.44 -0.51 -5.09 16 9 C 0.23 2.37 11.03 -16.79 -0.19 2.18 16 10 N -0.59 -4.88 10.30 -13.98 -0.14 -5.03 16 11 C 0.60 4.34 8.60 -88.69 -0.76 3.58 16 12 O -0.46 -1.36 11.91 -15.83 -0.19 -1.55 16 13 N -0.51 -4.89 2.99 -128.28 -0.38 -5.27 16 14 C 0.06 0.38 10.10 59.85 0.60 0.98 16 15 C 0.55 7.90 7.47 -14.64 -0.11 7.80 16 16 O -0.50 -9.11 16.70 5.07 0.08 -9.02 16 17 C 0.08 1.63 6.57 -2.53 -0.02 1.61 16 18 C 0.18 3.43 3.13 -65.78 -0.21 3.23 16 19 H 0.07 1.26 8.04 -51.93 -0.42 0.85 16 20 N -0.71 -17.18 5.28 -51.35 -0.27 -17.45 16 21 C -0.24 -6.64 9.98 -15.06 -0.15 -6.79 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 25 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.06 0.74 7.78 -51.93 -0.40 0.33 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.18 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.44 -0.71 9.08 45.56 0.41 -0.30 16 36 H 0.10 0.37 6.77 -51.93 -0.35 0.01 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 41 H 0.39 9.94 7.71 -40.82 -0.31 9.63 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -37.52 361.03 -6.55 -44.07 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.83 Total: 5.14 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -1.48 Total: 16.13 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.65 Total: -65.70 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.01 Total: -22.34 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.52 -6.55 -44.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054965099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.038 kcal (2) G-P(sol) polarization free energy of solvation -37.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds