Wall clock time and date at job start Fri Apr 10 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.64098 * 2 1 4 4 C 1.54323 * 110.87498 * 236.75668 * 2 1 3 5 5 N 1.47286 * 107.30631 * 219.38159 * 4 2 1 6 6 C 1.34785 * 125.79355 * 178.92181 * 5 4 2 7 7 O 1.21664 * 119.99755 * 174.99903 * 6 5 4 8 8 C 1.46897 * 119.99608 * 355.00151 * 6 5 4 9 9 C 1.39432 * 120.81970 * 281.09722 * 8 6 5 10 10 N 1.32564 * 119.69784 * 179.97438 * 9 8 6 11 11 C 1.31846 * 121.61450 * 359.97438 * 10 9 8 12 12 O 1.34689 * 119.11214 * 180.02562 * 11 10 9 13 13 N 1.35651 * 121.77536 * 359.97438 * 11 10 9 14 14 C 1.46502 * 119.95623 * 180.02562 * 13 11 10 15 15 C 1.35020 * 120.09223 * 359.77011 * 13 11 10 16 16 O 1.21830 * 120.77261 * 180.24031 * 15 13 11 17 17 C 1.47423 * 108.55859 * 358.92310 * 5 4 2 18 18 C 1.54903 * 104.92870 * 24.15708 * 17 5 4 19 19 H 1.08998 * 111.00698 * 81.00973 * 18 17 5 20 20 N 1.46507 * 111.00631 * 204.86367 * 18 17 5 21 21 C 1.36937 * 119.99647 * 273.54660 * 20 18 17 22 22 H 1.07998 * 119.99960 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99945 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99544 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46869 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46909 * 120.00285 * 25 23 21 28 28 H 1.48494 * 109.46895 * 240.00412 * 25 23 21 29 29 H 1.08999 * 109.47250 * 296.85309 * 1 2 3 30 30 H 1.08996 * 109.47170 * 56.85809 * 1 2 3 31 31 H 1.09001 * 109.47053 * 176.85347 * 1 2 3 32 32 H 1.09001 * 109.87914 * 338.78610 * 4 2 1 33 33 H 1.08999 * 109.88582 * 99.79907 * 4 2 1 34 34 H 1.08003 * 120.15104 * 359.97438 * 9 8 6 35 35 H 0.96698 * 117.00492 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.46939 * 359.97438 * 14 13 11 37 37 H 1.09000 * 109.47616 * 119.99335 * 14 13 11 38 38 H 1.09005 * 109.46946 * 239.99751 * 14 13 11 39 39 H 1.09002 * 110.36693 * 265.26099 * 17 5 4 40 40 H 1.09003 * 110.36514 * 143.04815 * 17 5 4 41 41 H 0.96993 * 119.99860 * 93.53777 * 20 18 17 42 42 H 0.97001 * 119.99306 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2060 5 7 3.2516 -1.5488 -0.7353 6 6 4.0035 -2.3816 -1.4822 7 8 5.0047 -2.8859 -1.0095 8 6 3.6141 -2.6801 -2.8667 9 6 2.6036 -3.6006 -3.1420 10 7 2.2697 -3.8528 -4.3998 11 6 2.8707 -3.2524 -5.4081 12 8 2.4908 -3.5464 -6.6665 13 7 3.8607 -2.3459 -5.2123 14 6 4.5010 -1.7021 -6.3620 15 6 4.2532 -2.0322 -3.9591 16 8 5.1380 -1.2166 -3.7688 17 6 3.4652 -1.2446 0.6913 18 6 2.0790 -0.7934 1.2151 19 1 1.4470 -1.6530 1.4382 20 7 2.2175 0.0727 2.3886 21 6 2.3128 -0.4782 3.6386 22 1 2.2856 -1.5510 3.7594 23 6 2.4445 0.3424 4.7505 24 7 2.4772 1.6500 4.6031 25 14 2.5739 -0.4090 6.4558 26 1 2.5114 -1.8890 6.3506 27 1 3.8635 -0.0112 7.0754 28 1 1.4502 0.0759 7.2968 29 1 -0.3634 0.4642 0.9168 30 1 -0.3633 0.5618 -0.8604 31 1 -0.3633 -1.0261 -0.0564 32 1 1.3191 -1.4772 -1.5770 33 1 2.3750 -0.1015 -1.9974 34 1 2.0953 -4.1059 -2.3340 35 1 1.7824 -4.1962 -6.7708 36 1 4.0533 -2.0752 -7.2832 37 1 4.3592 -0.6231 -6.2999 38 1 5.5671 -1.9293 -6.3585 39 1 4.1930 -0.4408 0.8029 40 1 3.8002 -2.1352 1.2230 41 1 2.2417 1.0362 2.2800 42 1 2.5689 2.2233 5.3801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054965099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:15 Heat of formation + Delta-G solvation = -71.280785 kcal Electronic energy + Delta-G solvation = -27495.630790 eV Core-core repulsion = 23476.197797 eV Total energy + Delta-G solvation = -4019.432993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10810 -41.06311 -39.88538 -38.88448 -37.95782 -36.37065 -35.92485 -33.88271 -32.49507 -31.98167 -29.29261 -29.03422 -27.35821 -26.37958 -25.50076 -24.89093 -23.13797 -21.40130 -21.17292 -20.31041 -19.94960 -19.21086 -18.68785 -18.04172 -17.58274 -17.28733 -16.93159 -16.59079 -16.27400 -15.81464 -15.49419 -15.41080 -15.22650 -14.75816 -14.54682 -14.49123 -14.36162 -14.20443 -13.94265 -13.53169 -13.29367 -13.12008 -13.02647 -12.88258 -12.86501 -12.28441 -12.15145 -12.02493 -11.96922 -11.71970 -11.47239 -11.43098 -11.38182 -11.05854 -10.94753 -9.75156 -9.59583 -9.06373 -7.96051 -5.25863 -0.63053 0.58155 0.61233 1.41866 1.47608 1.49498 1.58745 1.89458 2.31088 2.32156 2.56200 3.07726 3.22915 3.35129 3.51199 3.55633 3.83777 4.00839 4.08735 4.17333 4.28290 4.32480 4.33579 4.43962 4.48979 4.59216 4.61389 4.68635 4.85902 4.90183 4.90522 5.07820 5.14194 5.16676 5.25961 5.36004 5.50132 5.55316 6.01013 6.25411 6.46090 6.50097 6.58321 7.03002 7.32694 8.03775 8.28023 9.27020 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.002864 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.139261 B = 9775.350777 C =10016.517237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.119 3.881 5 N -0.604 5.604 6 C 0.603 3.397 7 O -0.587 6.587 8 C -0.370 4.370 9 C 0.270 3.730 10 N -0.579 5.579 11 C 0.618 3.382 12 O -0.433 6.433 13 N -0.510 5.510 14 C 0.054 3.946 15 C 0.552 3.448 16 O -0.562 6.562 17 C 0.090 3.910 18 C 0.177 3.823 19 H 0.073 0.927 20 N -0.721 5.721 21 C -0.242 4.242 22 H 0.077 0.923 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.290 1.290 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.203 0.797 35 H 0.467 0.533 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.376 0.624 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -11.550 -29.785 32.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.003 4.003 5 N -0.336 5.336 6 C 0.391 3.609 7 O -0.468 6.468 8 C -0.382 4.382 9 C 0.123 3.877 10 N -0.320 5.320 11 C 0.320 3.680 12 O -0.233 6.233 13 N -0.236 5.236 14 C -0.086 4.086 15 C 0.353 3.647 16 O -0.441 6.441 17 C -0.036 4.036 18 C 0.066 3.934 19 H 0.091 0.909 20 N -0.359 5.359 21 C -0.374 4.374 22 H 0.095 0.905 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.799 3.201 26 H -0.190 1.190 27 H -0.225 1.225 28 H -0.217 1.217 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.219 0.781 35 H 0.335 0.665 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.209 0.791 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.972 -11.621 -29.747 32.688 hybrid contribution 1.070 0.638 1.575 2.008 sum -5.902 -10.984 -28.171 30.808 Atomic orbital electron populations 1.21616 0.91428 1.03029 1.02228 1.22400 0.98226 0.98808 0.92950 0.91029 1.22223 0.86801 0.94815 0.96498 1.48547 1.30653 1.43259 1.11155 1.17351 0.81336 0.77447 0.84775 1.90759 1.27260 1.54430 1.74338 1.21052 1.10792 1.13645 0.92678 1.23120 0.85475 0.85631 0.93468 1.68582 1.32634 1.31873 0.98936 1.20366 0.80287 0.80419 0.86881 1.84171 1.58277 1.63187 1.17690 1.46287 1.31233 1.35556 1.10562 1.22481 0.99779 0.99756 0.86605 1.16744 0.83430 0.83019 0.81532 1.90950 1.32928 1.36900 1.83345 1.23077 1.01302 0.99113 0.80142 1.21526 0.91580 0.93793 0.86502 0.90879 1.42422 1.86934 1.05126 1.01453 1.19641 1.40774 0.92184 0.84792 0.90497 1.25531 1.03397 0.95813 1.01573 1.69818 1.58826 1.03216 1.29772 0.85124 0.76566 0.78125 0.80254 1.19039 1.22547 1.21676 0.93582 0.90330 0.90932 0.87959 0.91517 0.78075 0.66521 0.84489 0.89506 0.89977 0.94476 0.92921 0.79092 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.17 71.98 0.66 -2.36 16 2 C -0.10 -3.14 3.16 -9.61 -0.03 -3.17 16 3 H 0.07 2.37 8.00 -2.38 -0.02 2.35 16 4 C 0.12 3.13 6.10 86.68 0.53 3.66 16 5 N -0.60 -21.19 3.34 -815.58 -2.72 -23.91 16 6 C 0.60 22.51 6.90 86.51 0.60 23.11 16 7 O -0.59 -27.71 17.40 -4.23 -0.07 -27.78 16 8 C -0.37 -10.20 4.87 -19.74 -0.10 -10.29 16 9 C 0.27 4.71 11.03 84.87 0.94 5.65 16 10 N -0.58 -7.00 10.30 -311.74 -3.21 -10.22 16 11 C 0.62 6.30 8.60 179.67 1.55 7.84 16 12 O -0.43 -0.12 11.91 -79.54 -0.95 -1.07 16 13 N -0.51 -8.53 2.99 -789.42 -2.36 -10.90 16 14 C 0.05 0.57 10.10 127.77 1.29 1.86 16 15 C 0.55 15.50 7.47 85.18 0.64 16.14 16 16 O -0.56 -21.15 16.70 -4.76 -0.08 -21.23 16 17 C 0.09 3.74 6.57 86.85 0.57 4.31 16 18 C 0.18 6.90 3.13 46.38 0.15 7.05 16 19 H 0.07 2.77 8.04 -2.39 -0.02 2.75 16 20 N -0.72 -35.90 5.28 -316.37 -1.67 -37.57 16 21 C -0.24 -13.37 9.98 84.03 0.84 -12.53 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 24 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 25 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.10 1.95 7.78 -2.39 -0.02 1.93 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.47 -4.45 9.08 -74.06 -0.67 -5.12 16 36 H 0.14 0.40 6.77 -2.39 -0.02 0.39 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 2.35 8.09 -2.39 -0.02 2.33 16 41 H 0.38 20.14 7.71 -92.71 -0.71 19.42 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -88.02 361.03 -0.98 -89.00 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.31 Total: 16.17 kcal Atomic # 6 Polarization: 29.59 SS G_CDS: 8.09 Total: 37.68 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -9.68 Total: -141.38 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -1.10 Total: -50.07 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -88.02 -0.98 -89.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054965099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.718 kcal (2) G-P(sol) polarization free energy of solvation -88.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds