Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.64430 * 2 1 4 4 C 1.54331 * 110.72160 * 123.13651 * 2 1 3 5 5 N 1.47018 * 107.26941 * 140.73506 * 4 2 1 6 6 C 1.34777 * 125.64886 * 181.02893 * 5 4 2 7 7 O 1.21663 * 120.00242 * 185.14151 * 6 5 4 8 8 C 1.46892 * 119.99634 * 5.13720 * 6 5 4 9 9 C 1.39432 * 120.82057 * 75.26724 * 8 6 5 10 10 N 1.32563 * 119.70402 * 180.02562 * 9 8 6 11 11 C 1.31857 * 121.60817 * 359.97438 * 10 9 8 12 12 O 1.34692 * 119.10781 * 179.97438 * 11 10 9 13 13 N 1.35648 * 121.77950 * 0.02562 * 11 10 9 14 14 C 1.46499 * 119.95600 * 180.02562 * 13 11 10 15 15 C 1.35025 * 120.08800 * 359.97438 * 13 11 10 16 16 O 1.21825 * 120.76545 * 180.27774 * 15 13 11 17 17 C 1.47430 * 108.70434 * 1.28744 * 5 4 2 18 18 C 1.55129 * 104.72361 * 335.55468 * 17 5 4 19 19 H 1.08997 * 110.93667 * 155.28789 * 18 17 5 20 20 N 1.46495 * 111.19236 * 279.19141 * 18 17 5 21 21 C 1.36937 * 119.99889 * 267.18680 * 20 18 17 22 22 H 1.08002 * 119.99781 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00412 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99724 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00333 * 180.02562 * 23 21 20 26 26 H 1.48489 * 109.47105 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47268 * 120.00005 * 25 23 21 28 28 H 1.48503 * 109.46735 * 239.99861 * 25 23 21 29 29 H 1.08997 * 109.46778 * 298.31645 * 1 2 3 30 30 H 1.09002 * 109.46823 * 58.31368 * 1 2 3 31 31 H 1.09001 * 109.46931 * 178.31448 * 1 2 3 32 32 H 1.08996 * 109.87797 * 21.32125 * 4 2 1 33 33 H 1.08992 * 110.01378 * 260.22695 * 4 2 1 34 34 H 1.08000 * 120.14779 * 359.97438 * 9 8 6 35 35 H 0.96693 * 117.00281 * 0.02562 * 12 11 10 36 36 H 1.08993 * 109.46991 * 269.97467 * 14 13 11 37 37 H 1.09000 * 109.47346 * 29.97624 * 14 13 11 38 38 H 1.09002 * 109.46932 * 149.97757 * 14 13 11 39 39 H 1.09001 * 110.36486 * 94.48413 * 17 5 4 40 40 H 1.08997 * 110.36651 * 216.80335 * 17 5 4 41 41 H 0.96997 * 120.00326 * 87.18427 * 20 18 17 42 42 H 0.97004 * 119.99934 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0201 0.0000 4 6 2.0761 -0.7891 1.2087 5 7 3.2472 -1.5460 0.7428 6 6 3.9958 -2.3766 1.4952 7 8 5.0004 -2.8805 1.0292 8 6 3.5988 -2.6734 2.8780 9 6 2.5380 -3.5375 3.1468 10 7 2.1982 -3.7894 4.4032 11 6 2.8407 -3.2417 5.4160 12 8 2.4526 -3.5325 6.6725 13 7 3.8814 -2.3924 5.2266 14 6 4.5672 -1.8069 6.3811 15 6 4.2866 -2.0868 3.9753 16 8 5.2229 -1.3295 3.7911 17 6 3.4707 -1.2412 -0.6822 18 6 2.0829 -0.7948 -1.2124 19 1 2.1881 -0.1517 -2.0861 20 7 1.2343 -1.9504 -1.5136 21 6 1.2126 -2.4725 -2.7794 22 1 1.8214 -2.0326 -3.5555 23 6 0.4091 -3.5678 -3.0648 24 7 -0.3317 -4.1048 -2.1186 25 14 0.3800 -4.2804 -4.7913 26 1 1.2952 -3.5017 -5.6636 27 1 0.8219 -5.6975 -4.7494 28 1 -1.0006 -4.2082 -5.3334 29 1 -0.3633 0.4875 0.9047 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3633 -1.0272 -0.0302 32 1 1.3141 -1.4753 1.5782 33 1 2.3707 -0.1010 2.0011 34 1 1.9951 -3.9989 2.3352 35 1 1.7076 -4.1408 6.7722 36 1 4.0862 -0.8669 6.6511 37 1 4.5148 -2.4969 7.2233 38 1 5.6111 -1.6213 6.1279 39 1 4.1971 -0.4354 -0.7884 40 1 3.8103 -2.1313 -1.2118 41 1 0.6879 -2.3458 -0.8165 42 1 -0.8936 -4.8700 -2.3181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054965101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = -36.089664 kcal Electronic energy + Delta-G solvation = -28059.787784 eV Core-core repulsion = 24041.880793 eV Total energy + Delta-G solvation = -4017.906991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14164 -39.69027 -38.93798 -37.39718 -37.04885 -35.39418 -33.87181 -32.22443 -30.95550 -30.35768 -28.35856 -27.78040 -26.00622 -25.10551 -23.97101 -23.71797 -22.06114 -19.98213 -19.46437 -19.20807 -18.91643 -17.71641 -17.22792 -17.14373 -16.27477 -15.98345 -15.70093 -15.18005 -14.73761 -14.61857 -14.53671 -13.98957 -13.76943 -13.58229 -13.46274 -13.01651 -12.96897 -12.90290 -12.51868 -12.30808 -12.02513 -11.98764 -11.41633 -11.09723 -10.92741 -10.88364 -10.70878 -10.59191 -10.44737 -10.31923 -10.22921 -9.94264 -9.64397 -9.51347 -9.00664 -8.49603 -8.13559 -6.99403 -5.80898 -3.09334 0.30554 1.43704 1.61148 2.75766 3.14551 3.31307 3.43101 3.49968 3.51222 3.53527 3.87453 4.24210 4.56851 4.72081 4.84400 4.86871 4.93881 5.19710 5.23410 5.26444 5.38083 5.43062 5.59862 5.67642 5.75380 5.79345 5.83599 5.99533 6.11540 6.24886 6.28585 6.35459 6.41554 6.59095 6.62046 6.74995 6.85048 6.96616 7.38434 7.55198 7.69526 7.98415 8.37497 8.59117 9.49838 10.04009 10.39284 11.41551 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016928 B = 0.003619 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.628317 B = 7735.223744 C = 8087.562023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.112 3.888 5 N -0.595 5.595 6 C 0.607 3.393 7 O -0.533 6.533 8 C -0.325 4.325 9 C 0.234 3.766 10 N -0.584 5.584 11 C 0.595 3.405 12 O -0.458 6.458 13 N -0.511 5.511 14 C 0.058 3.942 15 C 0.557 3.443 16 O -0.511 6.511 17 C 0.079 3.921 18 C 0.171 3.829 19 H 0.075 0.925 20 N -0.707 5.707 21 C -0.242 4.242 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.184 0.816 35 H 0.444 0.556 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.386 0.614 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 5.352 20.030 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.097 0.903 4 C -0.012 4.012 5 N -0.328 5.328 6 C 0.393 3.607 7 O -0.410 6.410 8 C -0.336 4.336 9 C 0.091 3.909 10 N -0.325 5.325 11 C 0.296 3.704 12 O -0.256 6.256 13 N -0.240 5.240 14 C -0.084 4.084 15 C 0.356 3.644 16 O -0.386 6.386 17 C -0.046 4.046 18 C 0.059 3.941 19 H 0.093 0.907 20 N -0.347 5.347 21 C -0.373 4.373 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.201 0.799 35 H 0.306 0.694 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.221 0.779 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.124 5.330 19.844 20.784 hybrid contribution -0.150 -0.589 -0.603 0.856 sum 2.973 4.740 19.241 20.038 Atomic orbital electron populations 1.21608 0.93417 1.03391 1.00496 1.22522 0.97023 0.98647 0.95263 0.90250 1.22021 0.87689 0.94402 0.97047 1.48222 1.29288 1.43311 1.11946 1.16627 0.82446 0.78363 0.83308 1.90788 1.25141 1.51988 1.73090 1.21504 1.05365 1.11616 0.95140 1.22972 0.88378 0.87432 0.92118 1.68438 1.32460 1.32003 0.99576 1.20296 0.81870 0.82408 0.85825 1.84124 1.54717 1.65867 1.20852 1.46405 1.27628 1.38860 1.11096 1.22195 0.99792 0.99925 0.86462 1.16750 0.84660 0.82739 0.80215 1.90950 1.28436 1.36895 1.82304 1.23389 1.00344 1.00999 0.79894 1.21420 0.88548 0.89857 0.94298 0.90669 1.42327 1.49568 1.32526 1.10303 1.19304 1.20933 1.09638 0.87404 0.90937 1.24709 0.99516 0.98638 0.97641 1.69658 1.31032 1.25554 1.31638 0.86131 0.77139 0.78884 0.84103 1.20512 1.21890 1.21932 0.93925 0.92245 0.90917 0.91739 0.92736 0.79894 0.69428 0.90025 0.88712 0.88355 0.92725 0.89928 0.77923 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.81 37.16 0.33 -1.65 16 2 C -0.11 -1.75 3.40 -88.78 -0.30 -2.06 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.11 1.74 6.06 -3.06 -0.02 1.72 16 5 N -0.60 -11.13 3.32 -171.84 -0.57 -11.70 16 6 C 0.61 12.26 6.90 -12.76 -0.09 12.17 16 7 O -0.53 -12.85 17.40 5.22 0.09 -12.76 16 8 C -0.33 -5.36 4.86 -104.44 -0.51 -5.87 16 9 C 0.23 3.21 10.88 -16.79 -0.18 3.03 16 10 N -0.58 -6.45 10.31 -13.97 -0.14 -6.59 16 11 C 0.60 5.49 8.60 -88.68 -0.76 4.73 16 12 O -0.46 -2.18 12.19 -15.83 -0.19 -2.37 16 13 N -0.51 -5.65 2.99 -128.29 -0.38 -6.03 16 14 C 0.06 0.43 10.16 59.85 0.61 1.04 16 15 C 0.56 8.72 7.47 -14.64 -0.11 8.61 16 16 O -0.51 -9.60 16.29 5.08 0.08 -9.51 16 17 C 0.08 1.53 6.60 -2.41 -0.02 1.51 16 18 C 0.17 3.23 3.47 -65.67 -0.23 3.01 16 19 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 20 N -0.71 -16.50 4.58 -51.24 -0.23 -16.74 16 21 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 25 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.29 6.36 -51.93 -0.33 0.96 16 32 H 0.06 0.98 7.67 -51.93 -0.40 0.59 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 35 H 0.44 0.15 9.08 45.56 0.41 0.56 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.47 7.34 -51.93 -0.38 0.08 16 38 H 0.10 0.82 7.45 -51.93 -0.39 0.44 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.85 8.09 -51.93 -0.42 1.43 16 41 H 0.39 9.50 6.34 -40.82 -0.26 9.24 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -36.61 357.15 -6.48 -43.09 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.69 Total: 7.07 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: -1.52 Total: 19.34 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -0.61 Total: -67.25 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.02 Total: -24.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.61 -6.48 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054965101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.003 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds