Wall clock time and date at job start Fri Apr 10 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.64430 * 2 1 4 4 C 1.54331 * 110.72160 * 123.13651 * 2 1 3 5 5 N 1.47018 * 107.26941 * 140.73506 * 4 2 1 6 6 C 1.34777 * 125.64886 * 181.02893 * 5 4 2 7 7 O 1.21663 * 120.00242 * 185.14151 * 6 5 4 8 8 C 1.46892 * 119.99634 * 5.13720 * 6 5 4 9 9 C 1.39432 * 120.82057 * 75.26724 * 8 6 5 10 10 N 1.32563 * 119.70402 * 180.02562 * 9 8 6 11 11 C 1.31857 * 121.60817 * 359.97438 * 10 9 8 12 12 O 1.34692 * 119.10781 * 179.97438 * 11 10 9 13 13 N 1.35648 * 121.77950 * 0.02562 * 11 10 9 14 14 C 1.46499 * 119.95600 * 180.02562 * 13 11 10 15 15 C 1.35025 * 120.08800 * 359.97438 * 13 11 10 16 16 O 1.21825 * 120.76545 * 180.27774 * 15 13 11 17 17 C 1.47430 * 108.70434 * 1.28744 * 5 4 2 18 18 C 1.55129 * 104.72361 * 335.55468 * 17 5 4 19 19 H 1.08997 * 110.93667 * 155.28789 * 18 17 5 20 20 N 1.46495 * 111.19236 * 279.19141 * 18 17 5 21 21 C 1.36937 * 119.99889 * 267.18680 * 20 18 17 22 22 H 1.08002 * 119.99781 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00412 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99724 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00333 * 180.02562 * 23 21 20 26 26 H 1.48489 * 109.47105 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47268 * 120.00005 * 25 23 21 28 28 H 1.48503 * 109.46735 * 239.99861 * 25 23 21 29 29 H 1.08997 * 109.46778 * 298.31645 * 1 2 3 30 30 H 1.09002 * 109.46823 * 58.31368 * 1 2 3 31 31 H 1.09001 * 109.46931 * 178.31448 * 1 2 3 32 32 H 1.08996 * 109.87797 * 21.32125 * 4 2 1 33 33 H 1.08992 * 110.01378 * 260.22695 * 4 2 1 34 34 H 1.08000 * 120.14779 * 359.97438 * 9 8 6 35 35 H 0.96693 * 117.00281 * 0.02562 * 12 11 10 36 36 H 1.08993 * 109.46991 * 269.97467 * 14 13 11 37 37 H 1.09000 * 109.47346 * 29.97624 * 14 13 11 38 38 H 1.09002 * 109.46932 * 149.97757 * 14 13 11 39 39 H 1.09001 * 110.36486 * 94.48413 * 17 5 4 40 40 H 1.08997 * 110.36651 * 216.80335 * 17 5 4 41 41 H 0.96997 * 120.00326 * 87.18427 * 20 18 17 42 42 H 0.97004 * 119.99934 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0201 0.0000 4 6 2.0761 -0.7891 1.2087 5 7 3.2472 -1.5460 0.7428 6 6 3.9958 -2.3766 1.4952 7 8 5.0004 -2.8805 1.0292 8 6 3.5988 -2.6734 2.8780 9 6 2.5380 -3.5375 3.1468 10 7 2.1982 -3.7894 4.4032 11 6 2.8407 -3.2417 5.4160 12 8 2.4526 -3.5325 6.6725 13 7 3.8814 -2.3924 5.2266 14 6 4.5672 -1.8069 6.3811 15 6 4.2866 -2.0868 3.9753 16 8 5.2229 -1.3295 3.7911 17 6 3.4707 -1.2412 -0.6822 18 6 2.0829 -0.7948 -1.2124 19 1 2.1881 -0.1517 -2.0861 20 7 1.2343 -1.9504 -1.5136 21 6 1.2126 -2.4725 -2.7794 22 1 1.8214 -2.0326 -3.5555 23 6 0.4091 -3.5678 -3.0648 24 7 -0.3317 -4.1048 -2.1186 25 14 0.3800 -4.2804 -4.7913 26 1 1.2952 -3.5017 -5.6636 27 1 0.8219 -5.6975 -4.7494 28 1 -1.0006 -4.2082 -5.3334 29 1 -0.3633 0.4875 0.9047 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3633 -1.0272 -0.0302 32 1 1.3141 -1.4753 1.5782 33 1 2.3707 -0.1010 2.0011 34 1 1.9951 -3.9989 2.3352 35 1 1.7076 -4.1408 6.7722 36 1 4.0862 -0.8669 6.6511 37 1 4.5148 -2.4969 7.2233 38 1 5.6111 -1.6213 6.1279 39 1 4.1971 -0.4354 -0.7884 40 1 3.8103 -2.1313 -1.2118 41 1 0.6879 -2.3458 -0.8165 42 1 -0.8936 -4.8700 -2.3181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054965101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:20 Heat of formation + Delta-G solvation = -66.821013 kcal Electronic energy + Delta-G solvation = -28061.120395 eV Core-core repulsion = 24041.880793 eV Total energy + Delta-G solvation = -4019.239603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12266 -41.05859 -39.90378 -38.89328 -37.97293 -36.36788 -35.69851 -33.81654 -32.27067 -31.93927 -29.44948 -29.04398 -27.30867 -26.26301 -25.56465 -24.93389 -23.47153 -21.15987 -20.69138 -20.32735 -19.95076 -19.43204 -18.65251 -18.06339 -17.43829 -17.28603 -16.96119 -16.46939 -16.31128 -15.87137 -15.64866 -15.47412 -15.16929 -14.69868 -14.56442 -14.45437 -14.31921 -13.97475 -13.63289 -13.49587 -13.42701 -13.17016 -12.94274 -12.88082 -12.78824 -12.27617 -12.14219 -12.04713 -11.93340 -11.50396 -11.48139 -11.38761 -11.35665 -11.02147 -10.94344 -9.70870 -9.60129 -8.93250 -7.91070 -5.17480 -0.67023 0.55570 0.60167 1.46662 1.48721 1.51021 1.59013 1.97571 2.30791 2.33040 2.58510 3.06045 3.20728 3.38597 3.54941 3.62470 3.90482 4.01415 4.09122 4.10866 4.30898 4.32850 4.42437 4.48661 4.58638 4.69357 4.69802 4.73298 4.82080 4.89836 4.95656 5.02316 5.14848 5.23674 5.29159 5.41148 5.57244 5.65533 5.97845 6.31559 6.45696 6.52720 6.56443 7.08503 7.39609 8.12533 8.37459 9.31986 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016928 B = 0.003619 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.628317 B = 7735.223744 C = 8087.562023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 H 0.111 0.889 4 C 0.113 3.887 5 N -0.597 5.597 6 C 0.600 3.400 7 O -0.590 6.590 8 C -0.366 4.366 9 C 0.263 3.737 10 N -0.583 5.583 11 C 0.618 3.382 12 O -0.430 6.430 13 N -0.509 5.509 14 C 0.053 3.947 15 C 0.559 3.441 16 O -0.555 6.555 17 C 0.082 3.918 18 C 0.166 3.834 19 H 0.083 0.917 20 N -0.714 5.714 21 C -0.238 4.238 22 H 0.075 0.925 23 C -0.067 4.067 24 N -0.962 5.962 25 Si 0.963 3.037 26 H -0.269 1.269 27 H -0.301 1.301 28 H -0.292 1.292 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.179 0.821 35 H 0.466 0.534 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.378 0.622 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 6.428 22.540 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.120 4.120 3 H 0.130 0.870 4 C -0.009 4.009 5 N -0.328 5.328 6 C 0.388 3.612 7 O -0.471 6.471 8 C -0.378 4.378 9 C 0.116 3.884 10 N -0.324 5.324 11 C 0.320 3.680 12 O -0.230 6.230 13 N -0.236 5.236 14 C -0.087 4.087 15 C 0.359 3.641 16 O -0.434 6.434 17 C -0.044 4.044 18 C 0.055 3.945 19 H 0.101 0.899 20 N -0.353 5.353 21 C -0.370 4.370 22 H 0.093 0.907 23 C -0.259 4.259 24 N -0.613 5.613 25 Si 0.793 3.207 26 H -0.194 1.194 27 H -0.228 1.228 28 H -0.219 1.219 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.196 0.804 35 H 0.334 0.666 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.212 0.788 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.986 6.438 22.453 23.442 hybrid contribution 0.162 -0.936 -1.182 1.516 sum 2.148 5.502 21.271 22.076 Atomic orbital electron populations 1.21522 0.92885 1.01697 1.02029 1.22509 0.97282 0.99468 0.92725 0.87046 1.22174 0.86575 0.94516 0.97636 1.48366 1.29851 1.43125 1.11484 1.17252 0.81694 0.77531 0.84740 1.90729 1.27638 1.54108 1.74628 1.21129 1.08078 1.15056 0.93495 1.22898 0.86767 0.85449 0.93306 1.68531 1.32735 1.32404 0.98762 1.20334 0.80418 0.80505 0.86759 1.84177 1.55447 1.65847 1.17522 1.46241 1.27913 1.38735 1.10674 1.22510 0.98970 1.01563 0.85664 1.16548 0.83963 0.82215 0.81360 1.90912 1.30201 1.38910 1.83392 1.23241 1.00913 0.99714 0.80500 1.21618 0.87698 0.88924 0.96303 0.89872 1.42407 1.50080 1.33717 1.09096 1.19643 1.19605 1.09126 0.88657 0.90724 1.25376 1.00224 0.99620 1.00715 1.69783 1.32235 1.26108 1.33139 0.85223 0.77032 0.77597 0.80810 1.19392 1.22845 1.21919 0.90663 0.92520 0.94025 0.91469 0.90595 0.80376 0.66634 0.88210 0.85506 0.89646 0.90976 0.93954 0.78826 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.47 8.81 71.98 0.63 -2.84 16 2 C -0.10 -2.87 3.40 -9.60 -0.03 -2.90 16 3 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 4 C 0.11 3.38 6.06 86.73 0.53 3.90 16 5 N -0.60 -22.72 3.32 -815.82 -2.71 -25.43 16 6 C 0.60 25.25 6.90 86.51 0.60 25.85 16 7 O -0.59 -30.23 17.40 -4.23 -0.07 -30.30 16 8 C -0.37 -12.21 4.86 -19.75 -0.10 -12.30 16 9 C 0.26 7.05 10.88 84.87 0.92 7.97 16 10 N -0.58 -11.48 10.31 -311.73 -3.21 -14.70 16 11 C 0.62 9.33 8.60 179.67 1.54 10.87 16 12 O -0.43 -1.95 12.19 -79.58 -0.97 -2.92 16 13 N -0.51 -10.10 2.99 -789.43 -2.36 -12.46 16 14 C 0.05 0.64 10.16 127.77 1.30 1.94 16 15 C 0.56 17.34 7.47 85.18 0.64 17.97 16 16 O -0.56 -21.29 16.29 -4.75 -0.08 -21.37 16 17 C 0.08 3.25 6.60 86.93 0.57 3.82 16 18 C 0.17 6.19 3.47 46.46 0.16 6.35 16 19 H 0.08 2.99 8.09 -2.39 -0.02 2.97 16 20 N -0.71 -33.80 4.58 -316.03 -1.45 -35.24 16 21 C -0.24 -12.80 9.96 84.03 0.84 -11.97 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.96 -56.83 13.06 21.65 0.28 -56.54 16 25 Si 0.96 45.99 29.55 68.60 2.03 48.02 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.44 6.36 -2.39 -0.02 1.43 16 32 H 0.07 1.98 7.67 -2.39 -0.02 1.96 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.47 -2.18 9.08 -74.06 -0.67 -2.86 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 0.70 7.34 -2.39 -0.02 0.68 16 38 H 0.08 1.32 7.45 -2.39 -0.02 1.30 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.04 2.00 8.09 -2.39 -0.02 1.98 16 41 H 0.38 19.02 6.34 -92.71 -0.59 18.43 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -84.06 357.15 -0.66 -84.72 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.18 Total: 20.82 kcal Atomic # 6 Polarization: 37.34 SS G_CDS: 8.07 Total: 45.41 kcal Atomic # 7 Polarization: -134.93 SS G_CDS: -9.45 Total: -144.38 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -1.12 Total: -54.58 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -84.06 -0.66 -84.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054965101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.897 kcal (2) G-P(sol) polarization free energy of solvation -84.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds