Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35485 * 117.00137 * 180.02562 * 3 2 1 5 5 C 1.39626 * 119.97425 * 179.72572 * 4 3 2 6 6 N 1.31536 * 120.03607 * 179.75255 * 5 4 3 7 7 C 1.33208 * 119.98986 * 0.51756 * 6 5 4 8 8 C 1.47908 * 120.02601 * 179.71473 * 7 6 5 9 9 O 1.21546 * 119.99717 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00006 * 0.02562 * 8 7 6 11 11 C 1.46495 * 119.99880 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.64409 * 34.30000 * 11 10 8 13 13 C 1.54327 * 110.71847 * 271.15762 * 11 10 8 14 14 N 1.47022 * 107.26669 * 219.44425 * 13 11 10 15 15 C 1.36947 * 125.64629 * 178.97465 * 14 13 11 16 16 H 1.08000 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99901 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99822 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47214 * 60.00076 * 19 17 15 21 21 H 1.48493 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47399 * 300.00454 * 19 17 15 23 23 C 1.47424 * 108.70710 * 358.94488 * 14 13 11 24 24 C 1.55119 * 104.94245 * 23.99835 * 23 14 13 25 25 H 1.09000 * 110.93009 * 81.22003 * 24 23 14 26 26 O 1.42894 * 111.16313 * 205.13221 * 24 23 14 27 27 C 1.39394 * 119.94751 * 359.72953 * 7 6 5 28 28 N 1.32069 * 119.96225 * 0.02562 * 27 7 6 29 29 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 34 34 H 1.08003 * 119.98672 * 0.02562 * 5 4 3 35 35 H 0.97000 * 119.99801 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.88527 * 338.86064 * 13 11 10 37 37 H 1.08991 * 109.88235 * 99.87575 * 13 11 10 38 38 H 0.96995 * 120.00003 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.36970 * 142.97269 * 23 14 13 40 40 H 1.09002 * 110.36405 * 265.28657 * 23 14 13 41 41 H 0.96708 * 114.00242 * 292.17492 * 26 24 23 42 42 H 1.08005 * 120.01438 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8826 2.8152 -0.0064 6 7 5.1865 2.9890 -0.0020 7 6 5.9989 1.9333 -0.0024 8 6 7.4651 2.1278 -0.0038 9 8 8.2059 1.1642 -0.0047 10 7 7.9797 3.3735 -0.0042 11 6 9.4319 3.5660 -0.0062 12 1 9.9228 2.7814 -0.5819 13 6 9.9790 3.6085 1.4362 14 7 11.0202 4.6457 1.4777 15 6 11.7399 5.0103 2.5843 16 1 11.5612 4.5205 3.5301 17 6 12.6996 6.0088 2.4900 18 7 12.9176 6.6054 1.3373 19 14 13.6817 6.5057 3.9993 20 1 14.4345 5.3314 4.5088 21 1 14.6342 7.5856 3.6366 22 1 12.7566 6.9955 5.0527 23 6 11.1619 5.2276 0.1305 24 6 9.7991 4.9669 -0.5630 25 1 9.0614 5.7117 -0.2644 26 8 9.9420 4.9318 -1.9844 27 6 5.4661 0.6452 -0.0018 28 7 4.1567 0.4730 -0.0013 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2241 3.6713 -0.0100 35 1 7.3884 4.1424 -0.0032 36 1 9.1768 3.8606 2.1297 37 1 10.4059 2.6408 1.6994 38 1 13.5885 7.3028 1.2714 39 1 11.3557 6.2981 0.1981 40 1 11.9634 4.7299 -0.4153 41 1 10.1714 5.7849 -2.3779 42 1 6.1238 -0.2115 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078286009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -65.393863 kcal Electronic energy + Delta-G solvation = -26531.666871 eV Core-core repulsion = 22512.489154 eV Total energy + Delta-G solvation = -4019.177717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.61180 -41.01251 -39.77560 -39.13070 -36.69038 -35.87755 -35.23765 -33.66438 -33.20830 -31.59843 -30.17308 -28.77722 -26.74616 -26.35664 -25.52781 -23.73575 -22.69838 -22.24404 -21.58432 -19.78176 -19.59107 -19.12952 -18.60060 -18.35943 -17.63756 -17.25577 -16.72090 -16.38504 -16.18449 -15.98429 -15.66300 -15.41721 -15.16763 -15.02944 -14.76252 -14.41397 -14.02430 -13.81207 -13.60912 -13.49978 -13.21659 -13.15603 -13.04420 -12.84423 -12.69370 -12.45140 -12.44619 -12.10478 -11.92266 -11.81543 -11.62658 -11.44619 -10.98140 -10.75942 -10.47819 -10.31678 -9.90791 -8.96988 -7.81239 -5.27623 -0.73421 -0.18003 1.47964 1.51195 1.52895 1.57480 1.60842 1.87889 2.47085 2.56560 2.78135 2.87105 3.07107 3.24533 3.30342 3.60506 3.67083 3.85687 3.92149 4.04933 4.05134 4.15461 4.18970 4.40322 4.42133 4.44488 4.58492 4.62972 4.83117 4.89379 4.94319 4.96455 5.22567 5.35471 5.38472 5.44553 5.68236 5.83343 5.85021 6.21549 6.25815 6.50411 6.86748 6.99609 7.05532 7.69137 8.31434 9.20382 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.002357 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.492362 B =11875.145091 C =12249.647536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.292 6.292 4 C 0.300 3.700 5 C 0.057 3.943 6 N -0.384 5.384 7 C -0.031 4.031 8 C 0.580 3.420 9 O -0.563 6.563 10 N -0.684 5.684 11 C 0.154 3.846 12 H 0.085 0.915 13 C 0.132 3.868 14 N -0.619 5.619 15 C -0.244 4.244 16 H 0.081 0.919 17 C -0.062 4.062 18 N -0.946 5.946 19 Si 0.984 3.016 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.135 3.865 24 C 0.091 3.909 25 H 0.085 0.915 26 O -0.567 6.567 27 C 0.161 3.839 28 N -0.509 5.509 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.218 0.782 35 H 0.419 0.581 36 H 0.039 0.961 37 H 0.021 0.979 38 H 0.251 0.749 39 H 0.092 0.908 40 H -0.006 1.006 41 H 0.398 0.602 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.606 -8.175 -5.207 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.196 6.196 4 C 0.115 3.885 5 C -0.112 4.112 6 N -0.102 5.102 7 C -0.168 4.168 8 C 0.365 3.635 9 O -0.442 6.442 10 N -0.335 5.335 11 C 0.048 3.952 12 H 0.103 0.897 13 C 0.005 3.995 14 N -0.346 5.346 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.255 4.255 18 N -0.595 5.595 19 Si 0.812 3.188 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.200 1.200 23 C 0.009 3.991 24 C 0.030 3.970 25 H 0.103 0.897 26 O -0.374 6.374 27 C 0.003 3.997 28 N -0.238 5.238 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.257 0.743 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.012 0.988 41 H 0.248 0.752 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -25.266 -9.188 -5.069 27.358 hybrid contribution 0.978 0.774 0.630 1.397 sum -24.288 -8.413 -4.440 26.084 Atomic orbital electron populations 1.21847 0.90527 1.04445 1.03716 1.23017 0.96724 0.79405 1.02938 1.86269 1.14778 1.32814 1.85746 1.21527 0.85757 0.91863 0.89332 1.23520 0.90976 0.96126 1.00570 1.68337 1.04167 1.32311 1.05344 1.21569 0.93981 0.92045 1.09205 1.17798 0.86418 0.83282 0.75957 1.90796 1.60537 1.40972 1.51853 1.45618 1.06865 1.08360 1.72654 1.21666 0.80261 0.97732 0.95526 0.89701 1.21667 0.91417 0.91804 0.94623 1.44524 1.42372 1.40945 1.06782 1.19402 1.13824 1.15519 0.88541 0.90110 1.25641 1.00417 0.99135 1.00269 1.69943 1.36644 1.28552 1.24371 0.85074 0.78025 0.77301 0.78423 1.20781 1.21622 1.20022 1.22403 0.92000 1.00976 0.83747 1.23273 0.97577 0.95016 0.81089 0.89688 1.86381 1.93196 1.39023 1.18842 1.23583 0.90172 0.97526 0.88458 1.68304 1.04924 1.32994 1.17624 0.91210 0.88277 0.91295 0.91189 0.91289 0.76529 0.74334 0.94338 0.96125 0.93945 0.89042 0.98820 0.75183 0.79030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 71.98 0.74 -0.21 16 2 C 0.05 0.62 6.04 71.98 0.43 1.05 16 3 O -0.29 -4.39 10.12 -87.85 -0.89 -5.28 16 4 C 0.30 5.40 7.50 84.92 0.64 6.03 16 5 C 0.06 0.95 11.18 85.07 0.95 1.90 16 6 N -0.38 -8.48 9.70 -183.92 -1.78 -10.26 16 7 C -0.03 -0.79 6.74 41.78 0.28 -0.51 16 8 C 0.58 18.51 7.80 86.80 0.68 19.19 16 9 O -0.56 -21.32 16.02 -3.86 -0.06 -21.39 16 10 N -0.68 -21.66 5.11 -439.73 -2.25 -23.91 16 11 C 0.15 5.91 3.00 46.18 0.14 6.04 16 12 H 0.08 3.61 7.62 -2.39 -0.02 3.59 16 13 C 0.13 5.84 7.00 86.73 0.61 6.44 16 14 N -0.62 -32.29 3.40 -691.56 -2.35 -34.64 16 15 C -0.24 -13.74 10.27 84.03 0.86 -12.88 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 18 N -0.95 -54.82 10.09 21.65 0.22 -54.61 16 19 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.13 6.55 5.63 86.93 0.49 7.04 16 24 C 0.09 3.40 4.06 32.06 0.13 3.53 16 25 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 26 O -0.57 -18.87 13.48 -148.98 -2.01 -20.88 16 27 C 0.16 3.64 10.76 84.94 0.91 4.56 16 28 N -0.51 -10.46 9.37 -307.10 -2.88 -13.34 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.82 8.11 -2.39 -0.02 0.80 16 33 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 34 H 0.22 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.42 11.47 7.88 -92.71 -0.73 10.74 16 36 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.09 4.86 5.87 -2.39 -0.01 4.85 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.40 9.74 9.12 -74.05 -0.68 9.07 16 42 H 0.19 4.02 7.64 -2.91 -0.02 3.99 16 Total: -1.00 -71.17 359.20 -2.97 -74.13 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.33 Total: 23.80 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 7.33 Total: 39.20 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -9.04 Total: -136.75 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -2.96 Total: -47.54 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.17 -2.97 -74.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078286009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.740 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds