Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.91561 * 2 1 4 4 C 1.54902 * 111.00384 * 236.09373 * 2 1 3 5 5 N 1.47428 * 104.83548 * 204.92051 * 4 2 1 6 6 C 1.36939 * 125.64873 * 204.09529 * 5 4 2 7 7 H 1.07995 * 120.00235 * 5.08955 * 6 5 4 8 8 C 1.38807 * 119.99644 * 185.09176 * 6 5 4 9 9 N 1.31621 * 120.00472 * 354.83519 * 8 6 5 10 10 Si 1.86804 * 119.99885 * 174.83617 * 8 6 5 11 11 H 1.48496 * 109.47172 * 274.99789 * 10 8 6 12 12 H 1.48500 * 109.47123 * 34.99925 * 10 8 6 13 13 H 1.48499 * 109.47256 * 154.99909 * 10 8 6 14 14 C 1.47020 * 108.70202 * 24.35498 * 5 4 2 15 15 C 1.54338 * 107.26278 * 358.59167 * 14 5 4 16 16 H 1.08995 * 110.51883 * 96.45361 * 15 14 5 17 17 N 1.46507 * 110.84509 * 219.67115 * 15 14 5 18 18 C 1.34776 * 119.99802 * 268.68920 * 17 15 14 19 19 O 1.21673 * 119.99819 * 354.93152 * 18 17 15 20 20 C 1.46894 * 119.99981 * 174.93171 * 18 17 15 21 21 C 1.39427 * 120.82523 * 185.83065 * 20 18 17 22 22 N 1.32570 * 119.70069 * 179.71260 * 21 20 18 23 23 C 1.31843 * 121.61220 * 0.55524 * 22 21 20 24 24 O 1.34686 * 119.11279 * 179.72566 * 23 22 21 25 25 N 1.35654 * 121.77788 * 359.74642 * 23 22 21 26 26 C 1.46500 * 119.95413 * 179.97438 * 25 23 22 27 27 C 1.35021 * 120.08806 * 359.96166 * 25 23 22 28 28 O 1.21835 * 120.76642 * 180.02562 * 27 25 23 29 29 H 1.08994 * 109.47659 * 182.44956 * 1 2 3 30 30 H 1.09002 * 109.47243 * 302.45207 * 1 2 3 31 31 H 1.09008 * 109.46970 * 62.44851 * 1 2 3 32 32 H 1.09002 * 110.37050 * 86.08137 * 4 2 1 33 33 H 1.09002 * 110.46657 * 323.81047 * 4 2 1 34 34 H 0.96993 * 120.00370 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.87751 * 118.12747 * 14 5 4 36 36 H 1.08995 * 109.88374 * 239.29938 * 14 5 4 37 37 H 0.96999 * 120.00275 * 88.69377 * 17 15 14 38 38 H 1.08005 * 120.14454 * 359.97438 * 21 20 18 39 39 H 0.96695 * 116.99808 * 0.02562 * 24 23 22 40 40 H 1.08993 * 109.47224 * 269.97891 * 26 25 23 41 41 H 1.08998 * 109.47199 * 29.98762 * 26 25 23 42 42 H 1.09004 * 109.46653 * 149.98462 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4639 -1.5669 -1.6071 7 1 4.3607 -1.4341 -2.6738 8 6 5.6477 -2.0658 -1.0811 9 7 5.8118 -2.1326 0.2231 10 14 7.0078 -2.6425 -2.2244 11 1 6.7567 -4.0513 -2.6213 12 1 7.0334 -1.7840 -3.4358 13 1 8.3145 -2.5508 -1.5249 14 6 3.4657 -1.2795 0.6960 15 6 2.0860 -0.8080 1.2022 16 1 1.4467 -1.6632 1.4210 17 7 2.2286 0.0495 2.3815 18 6 2.2003 -0.4916 3.6156 19 8 1.9645 -1.6771 3.7547 20 6 2.4541 0.3499 4.7925 21 6 2.5487 -0.2115 6.0653 22 7 2.7840 0.5682 7.1113 23 6 2.9219 1.8731 6.9834 24 8 3.1544 2.6181 8.0811 25 7 2.8356 2.4857 5.7762 26 6 2.9948 3.9389 5.6803 27 6 2.6035 1.7579 4.6629 28 8 2.5241 2.2953 3.5723 29 1 -0.3634 -1.0266 0.0439 30 1 -0.3634 0.5514 0.8672 31 1 -0.3633 0.4754 -0.9112 32 1 2.1560 -0.1721 -2.0836 33 1 1.4524 -1.6704 -1.4043 34 1 6.6391 -2.4809 0.5906 35 1 3.6599 -2.2966 1.0367 36 1 4.2423 -0.6086 1.0631 37 1 2.3433 1.0067 2.2742 38 1 2.4350 -1.2774 6.1977 39 1 3.2102 2.1502 8.9255 40 1 2.0223 4.4189 5.7892 41 1 3.6611 4.2844 6.4706 42 1 3.4194 4.1945 4.7094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080250043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = -28.171199 kcal Electronic energy + Delta-G solvation = -27811.368938 eV Core-core repulsion = 23793.805317 eV Total energy + Delta-G solvation = -4017.563621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28026 -39.63582 -38.78515 -37.51030 -37.05255 -35.50775 -33.62206 -32.40310 -30.88586 -30.24638 -28.39035 -27.66726 -25.58644 -25.13039 -24.09632 -23.29929 -21.06483 -20.00049 -19.79467 -19.60748 -18.94642 -17.61875 -17.26597 -16.75011 -16.34528 -16.02158 -15.61201 -14.96034 -14.87126 -14.70403 -14.23782 -14.08810 -13.69622 -13.59998 -13.43427 -13.00320 -12.96648 -12.62019 -12.59242 -12.39283 -11.79641 -11.57031 -11.22615 -10.94608 -10.87634 -10.68432 -10.66643 -10.46354 -10.42039 -10.26633 -9.83631 -9.78610 -9.61448 -9.43468 -8.69073 -8.49217 -8.15387 -6.71448 -5.59739 -2.93975 0.12409 1.33353 1.47850 2.81767 2.89525 3.47284 3.51484 3.53507 3.68133 3.74844 3.86437 4.15658 4.59097 4.68357 4.81088 5.05977 5.08893 5.19562 5.28119 5.41228 5.48846 5.59987 5.66972 5.68644 5.93328 5.97564 6.16384 6.18931 6.32467 6.37207 6.49602 6.51883 6.66025 6.77323 7.00077 7.15846 7.26349 7.39284 7.69134 7.75690 7.96794 8.26185 8.36854 8.84922 9.31992 9.92987 10.59564 11.51190 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003515 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.319929 B = 7963.777114 C = 8672.298127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.292 1.292 14 C 0.174 3.826 15 C 0.118 3.882 16 H 0.089 0.911 17 N -0.698 5.698 18 C 0.582 3.418 19 O -0.552 6.552 20 C -0.338 4.338 21 C 0.261 3.739 22 N -0.591 5.591 23 C 0.602 3.398 24 O -0.455 6.455 25 N -0.509 5.509 26 C 0.055 3.945 27 C 0.553 3.447 28 O -0.512 6.512 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.252 0.748 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.409 0.591 38 H 0.191 0.809 39 H 0.444 0.556 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 12.983 17.993 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.215 1.215 12 H -0.208 1.208 13 H -0.218 1.218 14 C 0.048 3.952 15 C 0.013 3.987 16 H 0.107 0.893 17 N -0.356 5.356 18 C 0.368 3.632 19 O -0.433 6.433 20 C -0.349 4.349 21 C 0.116 3.884 22 N -0.332 5.332 23 C 0.303 3.697 24 O -0.253 6.253 25 N -0.237 5.237 26 C -0.086 4.086 27 C 0.354 3.646 28 O -0.388 6.388 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.253 0.747 38 H 0.207 0.793 39 H 0.306 0.694 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.517 12.639 17.754 23.399 hybrid contribution 0.954 0.217 -0.641 1.170 sum -7.563 12.856 17.113 22.701 Atomic orbital electron populations 1.21675 0.95150 1.01611 1.00864 1.22597 0.94800 0.99604 0.96386 0.90522 1.21575 0.87612 0.95020 0.94297 1.44407 1.07695 1.79324 1.01833 1.19044 0.91520 1.35879 0.89281 0.90376 1.24832 0.98167 1.01472 0.95955 1.69994 1.25956 1.51225 1.09359 0.86161 0.81379 0.78809 0.79549 1.21547 1.20815 1.21817 1.21481 0.90257 1.00192 0.83282 1.22488 1.00153 0.92893 0.83169 0.89341 1.46302 1.71732 1.12775 1.04761 1.17035 0.77205 0.86430 0.82506 1.90784 1.50887 1.15317 1.86281 1.21756 1.23146 0.92410 0.97621 1.23079 0.80027 1.00200 0.85076 1.68507 1.31406 0.99663 1.33607 1.20348 0.82770 0.85355 0.81208 1.84143 1.84877 1.38911 1.17365 1.46373 1.59564 1.12049 1.05687 1.22257 1.04248 0.76060 1.06067 1.17125 0.77749 0.87159 0.82594 1.90708 1.52485 1.72336 1.23290 0.92644 0.93214 0.92876 0.94139 0.96006 0.93809 0.93209 0.93596 0.74738 0.79266 0.69358 0.89914 0.88659 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.30 37.16 0.35 -1.75 16 2 C -0.11 -2.19 3.27 -88.47 -0.29 -2.48 16 3 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 4 C 0.14 3.12 6.70 -2.53 -0.02 3.10 16 5 N -0.61 -16.53 3.39 -170.07 -0.58 -17.10 16 6 C -0.23 -6.70 10.27 -15.06 -0.15 -6.86 16 7 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 8 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 9 N -0.92 -28.56 10.34 55.49 0.57 -27.99 16 10 Si 0.91 22.99 29.56 -169.99 -5.02 17.97 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 C 0.17 4.65 5.14 -3.06 -0.02 4.64 16 15 C 0.12 2.56 2.82 -66.08 -0.19 2.38 16 16 H 0.09 1.98 7.36 -51.93 -0.38 1.60 16 17 N -0.70 -13.94 5.03 -53.26 -0.27 -14.21 16 18 C 0.58 11.31 7.73 -12.76 -0.10 11.21 16 19 O -0.55 -12.07 16.03 5.21 0.08 -11.99 16 20 C -0.34 -5.16 5.93 -104.44 -0.62 -5.78 16 21 C 0.26 3.17 10.83 -16.79 -0.18 2.99 16 22 N -0.59 -5.62 10.30 -13.98 -0.14 -5.76 16 23 C 0.60 4.84 8.60 -88.69 -0.76 4.07 16 24 O -0.46 -1.67 12.18 -15.82 -0.19 -1.86 16 25 N -0.51 -5.03 2.99 -128.29 -0.38 -5.41 16 26 C 0.06 0.37 10.16 59.85 0.61 0.98 16 27 C 0.55 7.77 7.47 -14.64 -0.11 7.66 16 28 O -0.51 -8.33 13.49 5.07 0.07 -8.27 16 29 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.02 0.48 8.04 -51.93 -0.42 0.06 16 34 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.05 1.51 7.39 -51.93 -0.38 1.13 16 36 H 0.05 1.36 7.40 -51.93 -0.38 0.98 16 37 H 0.41 7.91 5.24 -40.82 -0.21 7.70 16 38 H 0.19 2.13 7.70 -52.48 -0.40 1.73 16 39 H 0.44 -0.42 9.08 45.56 0.41 0.00 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.42 7.34 -51.93 -0.38 0.03 16 42 H 0.10 0.79 7.45 -51.93 -0.39 0.40 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -37.89 350.16 -6.78 -44.67 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.61 Total: 4.84 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: -1.58 Total: 19.84 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -0.80 Total: -70.48 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.04 Total: -22.12 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.89 -6.78 -44.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080250043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.500 kcal (2) G-P(sol) polarization free energy of solvation -37.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds