Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.91561 * 2 1 4 4 C 1.54902 * 111.00384 * 236.09373 * 2 1 3 5 5 N 1.47428 * 104.83548 * 204.92051 * 4 2 1 6 6 C 1.36939 * 125.64873 * 204.09529 * 5 4 2 7 7 H 1.07995 * 120.00235 * 5.08955 * 6 5 4 8 8 C 1.38807 * 119.99644 * 185.09176 * 6 5 4 9 9 N 1.31621 * 120.00472 * 354.83519 * 8 6 5 10 10 Si 1.86804 * 119.99885 * 174.83617 * 8 6 5 11 11 H 1.48496 * 109.47172 * 274.99789 * 10 8 6 12 12 H 1.48500 * 109.47123 * 34.99925 * 10 8 6 13 13 H 1.48499 * 109.47256 * 154.99909 * 10 8 6 14 14 C 1.47020 * 108.70202 * 24.35498 * 5 4 2 15 15 C 1.54338 * 107.26278 * 358.59167 * 14 5 4 16 16 H 1.08995 * 110.51883 * 96.45361 * 15 14 5 17 17 N 1.46507 * 110.84509 * 219.67115 * 15 14 5 18 18 C 1.34776 * 119.99802 * 268.68920 * 17 15 14 19 19 O 1.21673 * 119.99819 * 354.93152 * 18 17 15 20 20 C 1.46894 * 119.99981 * 174.93171 * 18 17 15 21 21 C 1.39427 * 120.82523 * 185.83065 * 20 18 17 22 22 N 1.32570 * 119.70069 * 179.71260 * 21 20 18 23 23 C 1.31843 * 121.61220 * 0.55524 * 22 21 20 24 24 O 1.34686 * 119.11279 * 179.72566 * 23 22 21 25 25 N 1.35654 * 121.77788 * 359.74642 * 23 22 21 26 26 C 1.46500 * 119.95413 * 179.97438 * 25 23 22 27 27 C 1.35021 * 120.08806 * 359.96166 * 25 23 22 28 28 O 1.21835 * 120.76642 * 180.02562 * 27 25 23 29 29 H 1.08994 * 109.47659 * 182.44956 * 1 2 3 30 30 H 1.09002 * 109.47243 * 302.45207 * 1 2 3 31 31 H 1.09008 * 109.46970 * 62.44851 * 1 2 3 32 32 H 1.09002 * 110.37050 * 86.08137 * 4 2 1 33 33 H 1.09002 * 110.46657 * 323.81047 * 4 2 1 34 34 H 0.96993 * 120.00370 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.87751 * 118.12747 * 14 5 4 36 36 H 1.08995 * 109.88374 * 239.29938 * 14 5 4 37 37 H 0.96999 * 120.00275 * 88.69377 * 17 15 14 38 38 H 1.08005 * 120.14454 * 359.97438 * 21 20 18 39 39 H 0.96695 * 116.99808 * 0.02562 * 24 23 22 40 40 H 1.08993 * 109.47224 * 269.97891 * 26 25 23 41 41 H 1.08998 * 109.47199 * 29.98762 * 26 25 23 42 42 H 1.09004 * 109.46653 * 149.98462 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4639 -1.5669 -1.6071 7 1 4.3607 -1.4341 -2.6738 8 6 5.6477 -2.0658 -1.0811 9 7 5.8118 -2.1326 0.2231 10 14 7.0078 -2.6425 -2.2244 11 1 6.7567 -4.0513 -2.6213 12 1 7.0334 -1.7840 -3.4358 13 1 8.3145 -2.5508 -1.5249 14 6 3.4657 -1.2795 0.6960 15 6 2.0860 -0.8080 1.2022 16 1 1.4467 -1.6632 1.4210 17 7 2.2286 0.0495 2.3815 18 6 2.2003 -0.4916 3.6156 19 8 1.9645 -1.6771 3.7547 20 6 2.4541 0.3499 4.7925 21 6 2.5487 -0.2115 6.0653 22 7 2.7840 0.5682 7.1113 23 6 2.9219 1.8731 6.9834 24 8 3.1544 2.6181 8.0811 25 7 2.8356 2.4857 5.7762 26 6 2.9948 3.9389 5.6803 27 6 2.6035 1.7579 4.6629 28 8 2.5241 2.2953 3.5723 29 1 -0.3634 -1.0266 0.0439 30 1 -0.3634 0.5514 0.8672 31 1 -0.3633 0.4754 -0.9112 32 1 2.1560 -0.1721 -2.0836 33 1 1.4524 -1.6704 -1.4043 34 1 6.6391 -2.4809 0.5906 35 1 3.6599 -2.2966 1.0367 36 1 4.2423 -0.6086 1.0631 37 1 2.3433 1.0067 2.2742 38 1 2.4350 -1.2774 6.1977 39 1 3.2102 2.1502 8.9255 40 1 2.0223 4.4189 5.7892 41 1 3.6611 4.2844 6.4706 42 1 3.4194 4.1945 4.7094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080250043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = -60.552691 kcal Electronic energy + Delta-G solvation = -27812.773105 eV Core-core repulsion = 23793.805317 eV Total energy + Delta-G solvation = -4018.967788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.17153 -40.90265 -39.88103 -39.08642 -37.99186 -36.39599 -35.51750 -34.16222 -32.21918 -31.92165 -29.49071 -29.06361 -27.41958 -26.26230 -25.27572 -24.74075 -22.64976 -21.55327 -21.44465 -20.46091 -19.95864 -18.91666 -18.75265 -18.06871 -17.33976 -17.28345 -16.91444 -16.84397 -15.91619 -15.77301 -15.60489 -15.58207 -15.30407 -14.74966 -14.54516 -14.40730 -14.29750 -14.08699 -13.69212 -13.52446 -13.35758 -13.13237 -13.04709 -12.88997 -12.60430 -12.20215 -12.07278 -11.93880 -11.85256 -11.67675 -11.53805 -11.42073 -11.34987 -10.95065 -10.73261 -9.99274 -9.60613 -8.93161 -7.84945 -5.23301 -0.77491 0.52505 0.60222 1.43299 1.48017 1.55534 1.64301 2.18748 2.29126 2.50188 2.59093 3.03293 3.19903 3.32833 3.58299 3.74510 3.86398 4.06045 4.08402 4.12399 4.20743 4.34066 4.47264 4.56588 4.60647 4.70688 4.73194 4.83744 4.85609 5.03619 5.05442 5.12164 5.23195 5.29472 5.44900 5.47855 5.63550 5.79201 5.95179 6.15625 6.36641 6.53028 6.74183 7.05300 7.34569 7.74408 8.40304 9.25084 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003515 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.319929 B = 7963.777114 C = 8672.298127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.077 0.923 4 C 0.135 3.865 5 N -0.628 5.628 6 C -0.245 4.245 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.984 3.016 11 H -0.284 1.284 12 H -0.264 1.264 13 H -0.296 1.296 14 C 0.192 3.808 15 C 0.131 3.869 16 H 0.079 0.921 17 N -0.700 5.700 18 C 0.577 3.423 19 O -0.589 6.589 20 C -0.385 4.385 21 C 0.293 3.707 22 N -0.587 5.587 23 C 0.624 3.376 24 O -0.428 6.428 25 N -0.509 5.509 26 C 0.051 3.949 27 C 0.554 3.446 28 O -0.544 6.544 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.245 0.755 35 H -0.001 1.001 36 H 0.006 0.994 37 H 0.412 0.588 38 H 0.195 0.805 39 H 0.468 0.532 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 14.998 19.198 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.096 0.904 4 C 0.010 3.990 5 N -0.354 5.354 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.263 4.263 9 N -0.603 5.603 10 Si 0.812 3.188 11 H -0.211 1.211 12 H -0.189 1.189 13 H -0.222 1.222 14 C 0.065 3.935 15 C 0.025 3.975 16 H 0.097 0.903 17 N -0.358 5.358 18 C 0.366 3.634 19 O -0.473 6.473 20 C -0.397 4.397 21 C 0.144 3.856 22 N -0.327 5.327 23 C 0.326 3.674 24 O -0.228 6.228 25 N -0.235 5.235 26 C -0.089 4.089 27 C 0.356 3.644 28 O -0.423 6.423 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.025 0.975 37 H 0.257 0.743 38 H 0.212 0.788 39 H 0.335 0.665 40 H 0.119 0.881 41 H 0.143 0.857 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.283 14.745 19.032 25.803 hybrid contribution 1.212 -0.317 -0.779 1.475 sum -8.071 14.427 18.252 24.626 Atomic orbital electron populations 1.21615 0.91587 1.02330 1.02780 1.22528 0.97521 0.98465 0.93243 0.90423 1.21826 0.85361 0.95828 0.95948 1.44730 1.09419 1.79403 1.01870 1.19549 0.92276 1.35388 0.90197 0.89196 1.25802 1.01000 1.01988 0.97525 1.70268 1.26218 1.52325 1.11490 0.85013 0.77599 0.78379 0.77838 1.21063 1.18868 1.22229 1.21080 0.92319 0.96451 0.83662 1.22123 0.96748 0.93656 0.84993 0.90301 1.46285 1.72257 1.12625 1.04620 1.17665 0.75909 0.86516 0.83341 1.90738 1.52644 1.16993 1.86905 1.21365 1.28336 0.93058 0.96897 1.23186 0.77149 1.00782 0.84496 1.68637 1.31844 1.00272 1.31996 1.20448 0.80109 0.84927 0.81874 1.84195 1.83151 1.38147 1.17335 1.46224 1.58747 1.13215 1.05309 1.22541 1.05953 0.73908 1.06516 1.16881 0.77502 0.86904 0.83158 1.90659 1.54080 1.72844 1.24714 0.92480 0.92145 0.90150 0.92652 0.95054 0.94592 0.98317 0.97537 0.74306 0.78829 0.66489 0.88129 0.85707 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.30 71.98 0.67 -2.98 16 2 C -0.10 -3.74 3.27 -9.40 -0.03 -3.77 16 3 H 0.08 2.97 8.01 -2.39 -0.02 2.95 16 4 C 0.14 5.96 6.70 86.85 0.58 6.54 16 5 N -0.63 -35.43 3.39 -691.97 -2.35 -37.78 16 6 C -0.25 -14.70 10.27 84.03 0.86 -13.83 16 7 H 0.09 5.03 7.83 -2.91 -0.02 5.00 16 8 C -0.07 -4.30 5.48 84.86 0.47 -3.84 16 9 N -0.95 -62.53 10.34 21.65 0.22 -62.31 16 10 Si 0.98 48.35 29.56 68.60 2.03 50.38 16 11 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 C 0.19 10.96 5.14 86.73 0.45 11.41 16 15 C 0.13 5.96 2.82 46.18 0.13 6.09 16 16 H 0.08 3.73 7.36 -2.39 -0.02 3.71 16 17 N -0.70 -29.45 5.03 -440.63 -2.22 -31.66 16 18 C 0.58 23.67 7.73 86.51 0.67 24.34 16 19 O -0.59 -27.38 16.03 -4.26 -0.07 -27.45 16 20 C -0.39 -12.04 5.93 -19.75 -0.12 -12.16 16 21 C 0.29 6.96 10.83 84.87 0.92 7.88 16 22 N -0.59 -9.77 10.30 -311.74 -3.21 -12.98 16 23 C 0.62 8.06 8.60 179.67 1.54 9.60 16 24 O -0.43 -1.11 12.18 -79.51 -0.97 -2.08 16 25 N -0.51 -9.06 2.99 -789.43 -2.36 -11.42 16 26 C 0.05 0.55 10.16 127.77 1.30 1.84 16 27 C 0.55 15.57 7.47 85.18 0.64 16.20 16 28 O -0.54 -18.12 13.49 -4.78 -0.06 -18.19 16 29 H 0.06 1.65 8.11 -2.39 -0.02 1.63 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.03 1.34 8.04 -2.39 -0.02 1.32 16 34 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.00 -0.09 7.39 -2.38 -0.02 -0.11 16 36 H 0.01 0.41 7.40 -2.39 -0.02 0.39 16 37 H 0.41 16.69 5.24 -92.71 -0.49 16.21 16 38 H 0.19 4.37 7.70 -2.91 -0.02 4.35 16 39 H 0.47 -3.30 9.08 -74.06 -0.67 -3.97 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.12 0.59 7.34 -2.39 -0.02 0.57 16 42 H 0.09 1.27 7.45 -2.38 -0.02 1.25 16 Total: -1.00 -88.70 350.16 -0.99 -89.69 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.08 Total: 16.46 kcal Atomic # 6 Polarization: 39.27 SS G_CDS: 8.07 Total: 47.34 kcal Atomic # 7 Polarization: -146.24 SS G_CDS: -9.92 Total: -156.16 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -1.10 Total: -47.71 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -88.70 -0.99 -89.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080250043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.138 kcal (2) G-P(sol) polarization free energy of solvation -88.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds