Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46511 * 119.99622 * 2 1 4 4 C 1.52997 * 109.46852 * 90.14772 * 3 2 1 5 5 H 1.09001 * 112.96497 * 64.67539 * 4 3 2 6 6 C 1.53944 * 113.77139 * 292.99661 * 4 3 2 7 7 C 1.53942 * 86.29173 * 222.09072 * 6 4 3 8 8 N 1.47582 * 113.76933 * 196.35284 * 4 3 2 9 9 C 1.36929 * 134.49246 * 318.93664 * 8 4 3 10 10 H 1.08005 * 120.00324 * 5.65856 * 9 8 4 11 11 C 1.38815 * 120.00139 * 185.66062 * 9 8 4 12 12 N 1.31621 * 119.99567 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00140 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47349 * 60.00277 * 13 11 9 15 15 H 1.48499 * 109.47147 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47268 * 299.99912 * 13 11 9 17 17 C 1.34768 * 120.00744 * 180.02562 * 2 1 3 18 18 O 1.21674 * 119.99268 * 304.76077 * 17 2 1 19 19 C 1.46890 * 120.00466 * 124.75713 * 17 2 1 20 20 C 1.39436 * 120.82177 * 172.79582 * 19 17 2 21 21 N 1.32568 * 119.70234 * 179.78522 * 20 19 17 22 22 C 1.31848 * 121.60967 * 0.50293 * 21 20 19 23 23 O 1.34689 * 119.11369 * 179.70873 * 22 21 20 24 24 N 1.35662 * 121.77786 * 359.73236 * 22 21 20 25 25 C 1.46500 * 119.95585 * 180.02562 * 24 22 21 26 26 C 1.35019 * 120.08857 * 0.02562 * 24 22 21 27 27 O 1.21830 * 120.76928 * 179.97438 * 26 24 22 28 28 H 1.09001 * 109.47784 * 85.19104 * 1 2 3 29 29 H 1.09004 * 109.46653 * 205.19045 * 1 2 3 30 30 H 1.09004 * 109.47183 * 325.18245 * 1 2 3 31 31 H 1.09003 * 109.46887 * 330.14841 * 3 2 1 32 32 H 1.09001 * 109.46919 * 210.15085 * 3 2 1 33 33 H 1.08996 * 113.74488 * 336.44158 * 6 4 3 34 34 H 1.09006 * 113.73719 * 107.63866 * 6 4 3 35 35 H 1.09000 * 113.76793 * 137.90573 * 7 6 4 36 36 H 1.08998 * 113.77288 * 269.19373 * 7 6 4 37 37 H 0.97001 * 119.99719 * 180.02562 * 12 11 9 38 38 H 1.08005 * 120.14720 * 0.02562 * 20 19 17 39 39 H 0.96697 * 116.99789 * 0.02562 * 23 22 21 40 40 H 1.09002 * 109.46904 * 270.02063 * 25 24 22 41 41 H 1.08995 * 109.46993 * 30.01599 * 25 24 22 42 42 H 1.08999 * 109.47172 * 150.01955 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4556 1.7086 1.4425 5 1 3.1110 1.0266 1.9842 6 6 1.1781 2.0857 2.2143 7 6 1.9853 3.2719 2.7722 8 7 2.8365 3.1285 1.5724 9 6 3.6504 3.9723 0.8648 10 1 4.1069 3.6373 -0.0549 11 6 3.8889 5.2584 1.3296 12 7 3.3331 5.6665 2.4508 13 14 4.9998 6.4092 0.3648 14 1 4.4368 6.6174 -0.9934 15 1 5.0917 7.7138 1.0683 16 1 6.3545 5.8113 0.2528 17 6 2.1390 -1.1670 -0.0005 18 8 1.9229 -1.9946 0.8649 19 6 3.1343 -1.4400 -1.0457 20 6 3.9465 -2.5716 -0.9808 21 7 4.8346 -2.7985 -1.9386 22 6 4.9804 -1.9723 -2.9557 23 8 5.9025 -2.2489 -3.8976 24 7 4.2271 -0.8508 -3.0788 25 6 4.4223 0.0393 -4.2259 26 6 3.2977 -0.5538 -2.1455 27 8 2.6147 0.4503 -2.2435 28 1 -0.3635 0.0861 -1.0240 29 1 -0.3633 -0.9300 0.4374 30 1 -0.3634 0.8437 0.5868 31 1 1.6071 2.0291 -0.5115 32 1 3.1487 1.1392 -0.5162 33 1 0.3489 2.3824 1.5722 34 1 0.8900 1.3546 2.9698 35 1 1.4258 4.2067 2.8062 36 1 2.5019 3.0513 3.7063 37 1 3.4995 6.5653 2.7754 38 1 3.8497 -3.2621 -0.1560 39 1 6.4222 -3.0557 -3.7797 40 1 5.1734 0.7899 -3.9797 41 1 4.7579 -0.5426 -5.0842 42 1 3.4808 0.5328 -4.4672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085760043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = 27.705695 kcal Electronic energy + Delta-G solvation = -28311.599050 eV Core-core repulsion = 24296.458433 eV Total energy + Delta-G solvation = -4015.140617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20929 -39.75983 -38.75811 -37.79648 -37.12402 -35.45397 -34.70006 -32.02909 -30.90896 -28.35489 -28.29381 -27.72647 -26.51187 -24.72456 -23.77563 -23.22350 -22.29832 -20.28007 -19.50012 -19.05499 -18.82990 -17.31579 -17.17305 -16.56953 -16.06701 -16.05136 -15.61343 -15.42835 -14.80661 -14.71429 -14.53677 -14.13687 -13.77246 -13.75117 -13.51261 -12.92399 -12.79420 -12.73625 -12.41386 -12.21060 -12.08534 -11.71295 -11.28956 -10.95570 -10.92125 -10.73170 -10.62162 -10.53999 -10.37737 -10.25503 -9.77658 -9.69063 -9.58325 -9.24426 -8.69231 -8.58024 -7.77642 -6.73743 -5.67152 -2.97599 0.10658 1.43118 1.59956 2.51415 2.95317 3.43361 3.45454 3.48492 3.51373 3.54475 3.78226 4.18761 4.54452 4.74328 4.93862 4.96849 5.12143 5.26447 5.36529 5.38807 5.55848 5.60213 5.70470 5.78145 5.84992 6.03988 6.07343 6.10126 6.21793 6.35103 6.56041 6.58334 6.69268 6.85331 6.91846 7.25071 7.30284 7.38747 7.58812 7.61875 7.68399 7.92277 8.09111 8.27463 9.15077 9.81315 10.74426 11.50877 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.004560 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.361447 B = 6138.543887 C = 7702.015572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.648 5.648 3 C 0.150 3.850 4 C 0.121 3.879 5 H 0.038 0.962 6 C -0.156 4.156 7 C 0.165 3.835 8 N -0.602 5.602 9 C -0.217 4.217 10 H 0.076 0.924 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.907 3.093 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.287 1.287 17 C 0.620 3.380 18 O -0.521 6.521 19 C -0.357 4.357 20 C 0.261 3.739 21 N -0.598 5.598 22 C 0.607 3.393 23 O -0.455 6.455 24 N -0.511 5.511 25 C 0.056 3.944 26 C 0.543 3.457 27 O -0.480 6.480 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.253 0.747 38 H 0.186 0.814 39 H 0.443 0.557 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 -18.282 -13.991 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.384 5.384 3 C 0.027 3.973 4 C 0.013 3.987 5 H 0.055 0.945 6 C -0.194 4.194 7 C 0.040 3.960 8 N -0.328 5.328 9 C -0.345 4.345 10 H 0.093 0.907 11 C -0.205 4.205 12 N -0.569 5.569 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.214 1.214 17 C 0.411 3.589 18 O -0.397 6.397 19 C -0.370 4.370 20 C 0.116 3.884 21 N -0.340 5.340 22 C 0.309 3.691 23 O -0.252 6.252 24 N -0.239 5.239 25 C -0.086 4.086 26 C 0.342 3.658 27 O -0.353 6.353 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.305 0.695 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.531 -17.864 -13.907 22.690 hybrid contribution 0.876 0.877 -0.510 1.340 sum 2.407 -16.986 -14.416 22.409 Atomic orbital electron populations 1.21484 0.79270 1.02525 1.00379 1.46644 1.05845 1.05124 1.80765 1.21575 0.96557 0.82968 0.96201 1.22724 0.93554 0.88231 0.94177 0.94465 1.23726 0.97043 0.99295 0.99356 1.22146 0.89298 0.95279 0.89305 1.46070 1.53406 1.03786 1.29587 1.18934 1.20855 0.92539 1.02141 0.90658 1.24766 1.00756 0.97631 0.97325 1.69826 1.47331 1.18031 1.21697 0.86275 0.80540 0.80347 0.79060 1.21165 1.21593 1.21417 1.17109 0.78756 0.81410 0.81652 1.90717 1.64693 1.49462 1.34834 1.22004 1.10783 1.01674 1.02490 1.23077 0.82039 0.91683 0.91614 1.68475 1.29323 1.30430 1.05751 1.20387 0.82202 0.81566 0.84986 1.84165 1.47076 1.49995 1.43993 1.46620 1.31928 1.20210 1.25162 1.22236 1.05335 0.94430 0.86571 1.17052 0.79573 0.87031 0.82140 1.91040 1.43748 1.26340 1.74171 0.93944 0.92034 0.91260 0.90481 0.91525 0.90961 0.93226 0.91689 0.95600 0.93740 0.79747 0.69489 0.89726 0.88879 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.60 10.46 59.85 0.63 2.22 16 2 N -0.65 -11.48 2.04 -183.04 -0.37 -11.86 16 3 C 0.15 3.05 3.69 -4.04 -0.01 3.03 16 4 C 0.12 2.74 4.56 -66.87 -0.31 2.43 16 5 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.16 -3.25 6.86 -25.80 -0.18 -3.43 16 7 C 0.16 4.16 7.39 -2.85 -0.02 4.13 16 8 N -0.60 -16.21 3.58 -169.73 -0.61 -16.82 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 10 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -28.22 11.56 55.49 0.64 -27.58 16 13 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 C 0.62 10.75 6.60 -12.76 -0.08 10.67 16 18 O -0.52 -9.75 16.89 5.21 0.09 -9.66 16 19 C -0.36 -5.24 5.70 -104.44 -0.60 -5.84 16 20 C 0.26 3.02 10.83 -16.79 -0.18 2.84 16 21 N -0.60 -5.71 10.31 -13.97 -0.14 -5.86 16 22 C 0.61 5.21 8.60 -88.67 -0.76 4.45 16 23 O -0.45 -2.00 12.19 -15.82 -0.19 -2.19 16 24 N -0.51 -5.50 2.99 -128.29 -0.38 -5.88 16 25 C 0.06 0.45 10.16 59.85 0.61 1.06 16 26 C 0.54 7.91 6.75 -14.64 -0.10 7.81 16 27 O -0.48 -8.29 12.04 5.07 0.06 -8.23 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 30 H 0.07 1.03 5.99 -51.93 -0.31 0.71 16 31 H 0.08 1.67 8.07 -51.93 -0.42 1.25 16 32 H 0.07 1.42 5.40 -51.93 -0.28 1.14 16 33 H 0.07 1.43 6.85 -51.93 -0.36 1.08 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.76 7.44 -51.93 -0.39 1.37 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 38 H 0.19 1.87 7.71 -52.48 -0.40 1.46 16 39 H 0.44 -0.16 9.08 45.56 0.41 0.25 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.50 7.34 -51.93 -0.38 0.11 16 42 H 0.10 0.90 7.45 -51.93 -0.39 0.51 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -37.27 349.99 -6.50 -43.76 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.57 Total: -1.26 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: -1.26 Total: 22.60 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.87 Total: -67.99 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.27 -6.50 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085760043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.466 kcal (2) G-P(sol) polarization free energy of solvation -37.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds