Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 119.99900 * 2 1 4 4 C 1.52998 * 109.47054 * 275.64173 * 3 2 1 5 5 H 1.08992 * 112.96848 * 65.38735 * 4 3 2 6 6 C 1.53951 * 113.76742 * 293.70785 * 4 3 2 7 7 C 1.53946 * 86.28935 * 222.09228 * 6 4 3 8 8 N 1.47579 * 113.76909 * 197.06758 * 4 3 2 9 9 C 1.36939 * 134.49574 * 318.93243 * 8 4 3 10 10 H 1.08009 * 119.99419 * 5.47095 * 9 8 4 11 11 C 1.38811 * 120.00570 * 185.47893 * 9 8 4 12 12 N 1.31613 * 119.99747 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00016 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47192 * 59.99763 * 13 11 9 15 15 H 1.48500 * 109.46962 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47080 * 299.99691 * 13 11 9 17 17 C 1.34779 * 120.00126 * 180.02562 * 2 1 3 18 18 O 1.21616 * 120.00023 * 184.94767 * 17 2 1 19 19 C 1.47313 * 120.00026 * 4.94933 * 17 2 1 20 20 C 1.38319 * 120.73463 * 286.06033 * 19 17 2 21 21 N 1.34952 * 119.01609 * 180.26062 * 20 19 17 22 22 C 1.46503 * 119.70069 * 179.74341 * 21 20 19 23 23 C 1.34451 * 120.58874 * 359.46584 * 21 20 19 24 24 O 1.21907 * 119.19668 * 180.27724 * 23 21 20 25 25 N 1.33322 * 121.60120 * 0.29760 * 23 21 20 26 26 C 1.32220 * 120.92962 * 359.97438 * 25 23 21 27 27 O 1.35011 * 120.33170 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.46927 * 264.92760 * 1 2 3 29 29 H 1.08996 * 109.47569 * 24.92928 * 1 2 3 30 30 H 1.09008 * 109.46978 * 144.93559 * 1 2 3 31 31 H 1.08994 * 109.47305 * 35.64157 * 3 2 1 32 32 H 1.09004 * 109.47001 * 155.64248 * 3 2 1 33 33 H 1.08997 * 113.74318 * 336.43621 * 6 4 3 34 34 H 1.08999 * 113.73962 * 107.64404 * 6 4 3 35 35 H 1.09009 * 113.77001 * 137.91013 * 7 6 4 36 36 H 1.09001 * 113.77342 * 269.19596 * 7 6 4 37 37 H 0.96998 * 119.99908 * 179.97438 * 12 11 9 38 38 H 1.07993 * 120.48935 * 0.02562 * 20 19 17 39 39 H 1.09001 * 109.46570 * 179.73099 * 22 21 20 40 40 H 1.08998 * 109.46654 * 299.72105 * 22 21 20 41 41 H 1.08992 * 109.47575 * 59.72840 * 22 21 20 42 42 H 0.96710 * 113.99731 * 354.98812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3296 1.7813 -1.4355 5 1 1.3712 2.0433 -1.8835 6 6 3.2119 0.8940 -2.3324 7 6 3.8027 2.2065 -2.8785 8 7 3.3679 2.8164 -1.6043 9 6 3.7672 3.9034 -0.8734 10 1 3.3312 4.0915 0.0967 11 6 4.7322 4.7635 -1.3792 12 7 5.2637 4.5341 -2.5611 13 14 5.2763 6.2466 -0.3823 14 1 5.8442 5.7917 0.9121 15 1 6.3093 6.9993 -1.1384 16 1 4.1082 7.1277 -0.1280 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1692 0.0903 19 6 1.4064 -2.4406 -0.1112 20 6 0.6853 -2.9366 0.9599 21 7 0.0316 -4.1092 0.8220 22 6 -0.7322 -4.6513 1.9486 23 6 0.0705 -4.7815 -0.3417 24 8 -0.5336 -5.8358 -0.4398 25 7 0.7538 -4.3232 -1.3908 26 6 1.4209 -3.1837 -1.3222 27 8 2.1085 -2.7307 -2.3921 28 1 -0.3633 -0.0909 1.0237 29 1 -0.3634 0.9319 -0.4331 30 1 -0.3633 -0.8412 -0.5904 31 1 1.6559 2.0009 0.5988 32 1 3.1899 1.1153 0.4239 33 1 3.9286 0.2866 -1.7797 34 1 2.6510 0.3222 -3.0717 35 1 4.8848 2.1808 -3.0080 36 1 3.2790 2.5940 -3.7524 37 1 5.9377 5.1353 -2.9148 38 1 0.6491 -2.3955 1.8938 39 1 -1.1930 -5.5944 1.6547 40 1 -0.0636 -4.8210 2.7925 41 1 -1.5080 -3.9419 2.2365 42 1 2.1192 -3.3429 -3.1407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085967113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = 12.412329 kcal Electronic energy + Delta-G solvation = -27825.682030 eV Core-core repulsion = 23809.878243 eV Total energy + Delta-G solvation = -4015.803787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.24411 -39.91803 -38.89455 -37.66614 -37.04674 -35.28221 -35.00557 -32.22820 -31.80488 -28.62904 -27.99834 -27.77706 -26.55239 -25.30676 -24.05767 -23.22545 -22.39083 -20.15342 -19.98616 -18.94153 -18.64791 -17.76116 -17.06387 -16.71353 -16.45907 -16.20182 -15.64635 -15.38027 -14.86971 -14.80709 -14.57060 -14.16700 -14.00021 -13.75398 -13.62732 -13.42615 -13.18290 -12.87556 -12.70960 -12.32712 -12.07599 -11.87945 -11.36528 -11.27179 -11.00403 -10.87061 -10.66774 -10.51402 -10.41868 -10.40097 -9.90280 -9.79150 -9.65658 -9.46112 -8.94440 -8.75327 -8.41677 -6.81719 -5.72158 -3.03990 0.18241 1.07529 1.87588 2.49376 2.88636 3.02984 3.34855 3.41420 3.45315 3.47068 3.72353 3.97095 4.26244 4.49551 4.55690 4.66300 4.79926 4.89402 4.99774 5.09699 5.19516 5.27883 5.45833 5.50079 5.54758 5.60301 5.81782 5.89983 5.96016 6.11537 6.41288 6.53531 6.68289 6.77609 6.80534 6.84521 7.31665 7.35039 7.40171 7.56492 7.65231 7.74476 8.03027 8.18901 9.08551 9.75741 10.67080 11.45508 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.003012 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.293825 B = 9292.494545 C = 9838.611283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.600 5.600 3 C 0.115 3.885 4 C 0.127 3.873 5 H 0.041 0.959 6 C -0.155 4.155 7 C 0.164 3.836 8 N -0.600 5.600 9 C -0.224 4.224 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.582 3.418 18 O -0.509 6.509 19 C -0.281 4.281 20 C 0.233 3.767 21 N -0.520 5.520 22 C 0.053 3.947 23 C 0.654 3.346 24 O -0.532 6.532 25 N -0.612 5.612 26 C 0.490 3.510 27 O -0.426 6.426 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.254 0.746 38 H 0.189 0.811 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.831 -15.675 8.364 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C -0.008 4.008 4 C 0.019 3.981 5 H 0.058 0.942 6 C -0.193 4.193 7 C 0.039 3.961 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.366 3.634 18 O -0.382 6.382 19 C -0.294 4.294 20 C 0.094 3.906 21 N -0.235 5.235 22 C -0.089 4.089 23 C 0.356 3.644 24 O -0.407 6.407 25 N -0.370 5.370 26 C 0.288 3.712 27 O -0.219 6.219 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.206 0.794 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -13.362 -16.170 8.048 22.468 hybrid contribution 0.084 1.133 0.593 1.282 sum -13.279 -15.037 8.641 21.842 Atomic orbital electron populations 1.21770 0.80055 1.03551 1.01091 1.47760 1.06664 1.06243 1.72646 1.21912 0.97872 0.81892 0.99119 1.22511 0.93177 0.89614 0.92786 0.94220 1.23765 0.99365 0.97435 0.98780 1.22146 0.99357 0.86327 0.88260 1.45999 1.34938 1.29272 1.22425 1.18926 1.17990 1.00055 0.98233 0.90458 1.24790 0.99878 0.98870 0.96777 1.69825 1.30639 1.38647 1.17471 0.86252 0.78031 0.82663 0.79099 1.21093 1.21625 1.21275 1.17242 0.86702 0.82157 0.77310 1.90863 1.13086 1.86520 1.47772 1.19589 1.12954 1.02879 0.93940 1.22549 0.84573 0.84677 0.98816 1.46116 1.42058 1.19151 1.16136 1.22344 0.96764 1.02832 0.86930 1.17404 0.82443 0.85493 0.79041 1.90982 1.46454 1.21646 1.81576 1.69697 1.21580 1.16707 1.28987 1.20157 0.80559 0.85051 0.85400 1.85124 1.65865 1.46626 1.24330 0.92817 0.90163 0.92025 0.91163 0.88554 0.89876 0.93660 0.91668 0.95671 0.93637 0.79449 0.87234 0.89632 0.89554 0.72267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.85 59.84 0.59 1.26 16 2 N -0.60 -7.68 2.80 -182.90 -0.51 -8.19 16 3 C 0.11 1.92 5.40 -4.04 -0.02 1.89 16 4 C 0.13 2.52 4.57 -66.86 -0.31 2.22 16 5 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -3.12 7.34 -25.79 -0.19 -3.31 16 7 C 0.16 4.00 7.39 -2.85 -0.02 3.98 16 8 N -0.60 -15.25 3.58 -169.71 -0.61 -15.85 16 9 C -0.22 -6.19 10.51 -15.06 -0.16 -6.35 16 10 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.57 11.55 55.49 0.64 -26.93 16 13 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.58 8.02 6.30 -12.57 -0.08 7.95 16 18 O -0.51 -9.29 15.41 5.26 0.08 -9.20 16 19 C -0.28 -3.01 4.05 -104.70 -0.42 -3.43 16 20 C 0.23 1.64 9.65 -16.15 -0.16 1.48 16 21 N -0.52 -4.21 2.96 -128.88 -0.38 -4.59 16 22 C 0.05 0.23 10.57 59.85 0.63 0.86 16 23 C 0.65 8.28 8.32 -88.50 -0.74 7.55 16 24 O -0.53 -8.32 16.42 5.00 0.08 -8.24 16 25 N -0.61 -7.85 10.38 -16.47 -0.17 -8.02 16 26 C 0.49 5.68 7.93 -15.91 -0.13 5.56 16 27 O -0.43 -4.65 13.08 -16.74 -0.22 -4.87 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.06 0.48 6.95 -51.92 -0.36 0.11 16 31 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.10 1.90 7.20 -51.93 -0.37 1.53 16 33 H 0.08 1.80 6.91 -51.93 -0.36 1.44 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.75 7.43 -51.92 -0.39 1.37 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.19 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.11 0.65 6.82 -51.93 -0.35 0.30 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.42 2.70 8.98 45.56 0.41 3.11 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -39.14 357.91 -6.58 -45.72 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.77 Total: -1.63 kcal Atomic # 6 Polarization: 20.46 SS G_CDS: -1.09 Total: 19.37 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -1.03 Total: -63.59 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.14 -6.58 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085967113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.131 kcal (2) G-P(sol) polarization free energy of solvation -39.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds