Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 119.99900 * 2 1 4 4 C 1.52998 * 109.47054 * 275.64173 * 3 2 1 5 5 H 1.08992 * 112.96848 * 65.38735 * 4 3 2 6 6 C 1.53951 * 113.76742 * 293.70785 * 4 3 2 7 7 C 1.53946 * 86.28935 * 222.09228 * 6 4 3 8 8 N 1.47579 * 113.76909 * 197.06758 * 4 3 2 9 9 C 1.36939 * 134.49574 * 318.93243 * 8 4 3 10 10 H 1.08009 * 119.99419 * 5.47095 * 9 8 4 11 11 C 1.38811 * 120.00570 * 185.47893 * 9 8 4 12 12 N 1.31613 * 119.99747 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00016 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47192 * 59.99763 * 13 11 9 15 15 H 1.48500 * 109.46962 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47080 * 299.99691 * 13 11 9 17 17 C 1.34779 * 120.00126 * 180.02562 * 2 1 3 18 18 O 1.21616 * 120.00023 * 184.94767 * 17 2 1 19 19 C 1.47313 * 120.00026 * 4.94933 * 17 2 1 20 20 C 1.38319 * 120.73463 * 286.06033 * 19 17 2 21 21 N 1.34952 * 119.01609 * 180.26062 * 20 19 17 22 22 C 1.46503 * 119.70069 * 179.74341 * 21 20 19 23 23 C 1.34451 * 120.58874 * 359.46584 * 21 20 19 24 24 O 1.21907 * 119.19668 * 180.27724 * 23 21 20 25 25 N 1.33322 * 121.60120 * 0.29760 * 23 21 20 26 26 C 1.32220 * 120.92962 * 359.97438 * 25 23 21 27 27 O 1.35011 * 120.33170 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.46927 * 264.92760 * 1 2 3 29 29 H 1.08996 * 109.47569 * 24.92928 * 1 2 3 30 30 H 1.09008 * 109.46978 * 144.93559 * 1 2 3 31 31 H 1.08994 * 109.47305 * 35.64157 * 3 2 1 32 32 H 1.09004 * 109.47001 * 155.64248 * 3 2 1 33 33 H 1.08997 * 113.74318 * 336.43621 * 6 4 3 34 34 H 1.08999 * 113.73962 * 107.64404 * 6 4 3 35 35 H 1.09009 * 113.77001 * 137.91013 * 7 6 4 36 36 H 1.09001 * 113.77342 * 269.19596 * 7 6 4 37 37 H 0.96998 * 119.99908 * 179.97438 * 12 11 9 38 38 H 1.07993 * 120.48935 * 0.02562 * 20 19 17 39 39 H 1.09001 * 109.46570 * 179.73099 * 22 21 20 40 40 H 1.08998 * 109.46654 * 299.72105 * 22 21 20 41 41 H 1.08992 * 109.47575 * 59.72840 * 22 21 20 42 42 H 0.96710 * 113.99731 * 354.98812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3296 1.7813 -1.4355 5 1 1.3712 2.0433 -1.8835 6 6 3.2119 0.8940 -2.3324 7 6 3.8027 2.2065 -2.8785 8 7 3.3679 2.8164 -1.6043 9 6 3.7672 3.9034 -0.8734 10 1 3.3312 4.0915 0.0967 11 6 4.7322 4.7635 -1.3792 12 7 5.2637 4.5341 -2.5611 13 14 5.2763 6.2466 -0.3823 14 1 5.8442 5.7917 0.9121 15 1 6.3093 6.9993 -1.1384 16 1 4.1082 7.1277 -0.1280 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1692 0.0903 19 6 1.4064 -2.4406 -0.1112 20 6 0.6853 -2.9366 0.9599 21 7 0.0316 -4.1092 0.8220 22 6 -0.7322 -4.6513 1.9486 23 6 0.0705 -4.7815 -0.3417 24 8 -0.5336 -5.8358 -0.4398 25 7 0.7538 -4.3232 -1.3908 26 6 1.4209 -3.1837 -1.3222 27 8 2.1085 -2.7307 -2.3921 28 1 -0.3633 -0.0909 1.0237 29 1 -0.3634 0.9319 -0.4331 30 1 -0.3633 -0.8412 -0.5904 31 1 1.6559 2.0009 0.5988 32 1 3.1899 1.1153 0.4239 33 1 3.9286 0.2866 -1.7797 34 1 2.6510 0.3222 -3.0717 35 1 4.8848 2.1808 -3.0080 36 1 3.2790 2.5940 -3.7524 37 1 5.9377 5.1353 -2.9148 38 1 0.6491 -2.3955 1.8938 39 1 -1.1930 -5.5944 1.6547 40 1 -0.0636 -4.8210 2.7925 41 1 -1.5080 -3.9419 2.2365 42 1 2.1192 -3.3429 -3.1407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085967113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = -21.398940 kcal Electronic energy + Delta-G solvation = -27827.148197 eV Core-core repulsion = 23809.878243 eV Total energy + Delta-G solvation = -4017.269954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.04211 -41.02311 -39.84223 -39.24285 -37.97287 -36.41813 -35.78032 -34.20109 -32.78403 -29.84760 -29.76018 -28.58035 -27.43956 -26.06963 -25.29885 -24.99751 -23.77098 -21.14958 -20.96890 -20.63381 -19.40769 -18.77156 -18.42747 -17.86232 -17.41364 -17.30917 -16.90228 -16.50368 -16.25344 -15.79682 -15.56564 -15.49504 -15.24651 -14.89004 -14.62355 -14.43866 -14.06854 -13.91090 -13.78032 -13.48611 -13.31184 -13.10897 -12.87340 -12.56023 -12.53998 -12.43004 -12.26415 -12.18845 -11.78395 -11.55811 -11.38204 -11.29306 -11.20499 -10.84059 -10.80032 -9.75767 -9.61313 -8.84296 -7.85227 -5.17879 -0.49043 0.21927 1.18718 1.46976 1.51004 1.51854 1.57269 2.01645 2.14636 2.49322 2.53615 3.03254 3.27958 3.38406 3.47841 3.57545 3.95910 4.08152 4.10706 4.22047 4.30946 4.34611 4.39460 4.48083 4.53709 4.71827 4.82601 4.85684 4.90248 4.94890 4.98068 5.08163 5.11001 5.16515 5.27409 5.52550 5.58068 5.78382 5.97831 6.10369 6.41570 6.52757 6.90516 6.95332 7.16007 7.66935 8.63856 9.33142 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.003012 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.293825 B = 9292.494545 C = 9838.611283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.594 5.594 3 C 0.130 3.870 4 C 0.134 3.866 5 H 0.059 0.941 6 C -0.128 4.128 7 C 0.158 3.842 8 N -0.628 5.628 9 C -0.226 4.226 10 H 0.092 0.908 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.978 3.022 14 H -0.276 1.276 15 H -0.300 1.300 16 H -0.273 1.273 17 C 0.588 3.412 18 O -0.562 6.562 19 C -0.307 4.307 20 C 0.274 3.726 21 N -0.509 5.509 22 C 0.046 3.954 23 C 0.646 3.354 24 O -0.575 6.575 25 N -0.640 5.640 26 C 0.489 3.511 27 O -0.440 6.440 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.018 0.982 37 H 0.246 0.754 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 -15.701 11.290 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.326 5.326 3 C 0.006 3.994 4 C 0.027 3.973 5 H 0.076 0.924 6 C -0.167 4.167 7 C 0.032 3.968 8 N -0.355 5.355 9 C -0.354 4.354 10 H 0.109 0.891 11 C -0.266 4.266 12 N -0.608 5.608 13 Si 0.806 3.194 14 H -0.202 1.202 15 H -0.227 1.227 16 H -0.199 1.199 17 C 0.374 3.626 18 O -0.440 6.440 19 C -0.319 4.319 20 C 0.133 3.867 21 N -0.220 5.220 22 C -0.094 4.094 23 C 0.349 3.651 24 O -0.453 6.453 25 N -0.400 5.400 26 C 0.289 3.711 27 O -0.236 6.236 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.258 0.742 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -16.106 -16.216 11.006 25.367 hybrid contribution 0.832 1.063 -0.290 1.381 sum -15.274 -15.153 10.717 24.037 Atomic orbital electron populations 1.22110 0.76787 1.04178 1.03980 1.47738 1.08436 1.04508 1.71927 1.21438 0.97319 0.84090 0.96581 1.22682 0.92443 0.87173 0.94976 0.92397 1.23449 0.98847 0.95568 0.98794 1.22068 0.97249 0.89059 0.88388 1.46337 1.36884 1.29705 1.22537 1.19425 1.17207 0.99990 0.98821 0.89058 1.25675 1.00735 1.02137 0.98067 1.70037 1.31622 1.39711 1.19470 0.85163 0.77520 0.79176 0.77563 1.20221 1.22673 1.19882 1.17533 0.86047 0.83062 0.75919 1.90847 1.15641 1.87351 1.50138 1.19318 1.15351 1.02157 0.95053 1.23212 0.81109 0.83296 0.99079 1.46143 1.41292 1.18812 1.15792 1.22732 0.97932 1.02867 0.85914 1.17479 0.82163 0.85343 0.80156 1.90953 1.48252 1.23486 1.82574 1.69576 1.22697 1.17546 1.30152 1.20238 0.80260 0.84789 0.85808 1.85098 1.65884 1.47533 1.25099 0.88768 0.89989 0.91015 0.89127 0.91941 0.91543 0.91067 0.95430 0.96394 0.94551 0.74192 0.89305 0.86747 0.85797 0.70650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.85 127.77 1.26 2.12 16 2 N -0.59 -13.39 2.80 -850.81 -2.38 -15.78 16 3 C 0.13 4.08 5.40 86.38 0.47 4.55 16 4 C 0.13 5.14 4.57 45.09 0.21 5.35 16 5 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 6 C -0.13 -5.17 7.34 31.25 0.23 -4.94 16 7 C 0.16 7.95 7.39 86.44 0.64 8.59 16 8 N -0.63 -32.14 3.58 -690.85 -2.47 -34.61 16 9 C -0.23 -12.49 10.51 84.03 0.88 -11.61 16 10 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 11 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 12 N -0.96 -59.58 11.55 21.65 0.25 -59.33 16 13 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C 0.59 15.02 6.30 86.63 0.55 15.57 16 18 O -0.56 -20.38 15.41 -4.08 -0.06 -20.45 16 19 C -0.31 -5.75 4.05 -19.92 -0.08 -5.83 16 20 C 0.27 2.59 9.65 84.23 0.81 3.40 16 21 N -0.51 -6.44 2.96 -679.97 -2.01 -8.45 16 22 C 0.05 0.19 10.57 127.77 1.35 1.54 16 23 C 0.65 15.53 8.32 179.61 1.49 17.02 16 24 O -0.57 -17.87 16.42 -5.01 -0.08 -17.95 16 25 N -0.64 -16.06 10.38 -438.20 -4.55 -20.61 16 26 C 0.49 10.82 7.93 85.59 0.68 11.50 16 27 O -0.44 -9.51 13.08 -82.83 -1.08 -10.59 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 1.02 8.03 -2.39 -0.02 1.00 16 30 H 0.07 0.78 6.95 -2.38 -0.02 0.76 16 31 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 32 H 0.06 2.44 7.20 -2.38 -0.02 2.42 16 33 H 0.07 2.94 6.91 -2.39 -0.02 2.92 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.03 1.57 7.43 -2.38 -0.02 1.55 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.24 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.09 0.86 6.82 -2.39 -0.02 0.85 16 40 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.43 5.71 8.98 -74.05 -0.67 5.05 16 Total: -1.00 -91.38 357.91 -1.02 -92.41 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.40 Total: 4.03 kcal Atomic # 6 Polarization: 34.53 SS G_CDS: 8.95 Total: 43.48 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -11.17 Total: -138.78 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.23 Total: -48.99 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -91.38 -1.02 -92.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085967113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.007 kcal (2) G-P(sol) polarization free energy of solvation -91.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds