Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34946 * 119.70718 * 2 1 4 4 C 1.38321 * 119.02144 * 180.02562 * 3 2 1 5 5 C 1.47314 * 120.73578 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00005 * 185.30455 * 5 4 3 7 7 N 1.34771 * 119.99961 * 5.30644 * 5 4 3 8 8 C 1.46499 * 119.99945 * 174.89896 * 7 5 4 9 9 C 1.53008 * 109.47123 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.85062 * 316.19677 * 9 8 7 11 11 C 1.53787 * 113.68930 * 87.45875 * 9 8 7 12 12 C 1.53786 * 87.07723 * 139.99050 * 11 9 8 13 13 H 1.09007 * 113.60946 * 89.11661 * 12 11 9 14 14 N 1.46496 * 113.69202 * 220.00644 * 12 11 9 15 15 C 1.36932 * 120.00300 * 254.06583 * 14 12 11 16 16 H 1.08000 * 120.00098 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00249 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47023 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46676 * 120.00289 * 19 17 15 22 22 H 1.48498 * 109.47096 * 240.00265 * 19 17 15 23 23 C 1.53775 * 113.61482 * 184.99769 * 9 8 7 24 24 C 1.42095 * 118.52709 * 0.25811 * 4 3 2 25 25 O 1.35013 * 120.33309 * 179.74477 * 24 4 3 26 26 N 1.32219 * 119.33178 * 359.47879 * 24 4 3 27 27 C 1.33317 * 120.92798 * 0.52674 * 26 24 4 28 28 O 1.21915 * 119.20031 * 179.70131 * 27 26 24 29 29 H 1.08999 * 109.47409 * 90.00283 * 1 2 3 30 30 H 1.09009 * 109.47661 * 210.00151 * 1 2 3 31 31 H 1.09003 * 109.47346 * 329.99610 * 1 2 3 32 32 H 1.08003 * 120.48756 * 0.04610 * 3 2 1 33 33 H 0.97004 * 120.00330 * 354.89471 * 7 5 4 34 34 H 1.08998 * 109.47041 * 59.99947 * 8 7 5 35 35 H 1.08996 * 109.46865 * 299.99320 * 8 7 5 36 36 H 1.08999 * 113.61108 * 25.44854 * 11 9 8 37 37 H 1.08989 * 113.61808 * 254.54264 * 11 9 8 38 38 H 0.97001 * 119.99977 * 74.07132 * 14 12 11 39 39 H 0.96996 * 119.99828 * 180.02562 * 18 17 15 40 40 H 1.08997 * 113.61674 * 105.38802 * 23 9 8 41 41 H 1.09006 * 113.61401 * 334.48187 * 23 9 8 42 42 H 0.96701 * 114.00084 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1337 1.1721 0.0000 4 6 3.5168 1.1555 -0.0005 5 6 4.2848 2.4127 -0.0011 6 8 5.4967 2.3848 -0.0990 7 7 3.6444 3.5936 0.1068 8 6 4.4127 4.8359 0.2188 9 6 3.4519 6.0218 0.3269 10 1 2.6214 5.9592 -0.3763 11 6 3.0163 6.3347 1.7682 12 6 3.1458 7.8224 1.4006 13 1 2.2316 8.2520 0.9909 14 7 3.7332 8.6423 2.4631 15 6 2.9402 9.4848 3.1955 16 1 1.8816 9.5446 2.9901 17 6 3.4968 10.2613 4.2026 18 7 4.7869 10.1880 4.4532 19 14 2.4149 11.4101 5.2021 20 1 1.0118 11.3069 4.7270 21 1 2.4808 11.0294 6.6360 22 1 2.8919 12.8068 5.0383 23 6 4.1574 7.3882 0.3269 24 6 4.1804 -0.1009 -0.0067 25 8 5.5292 -0.1596 -0.0126 26 7 3.4637 -1.2120 -0.0012 27 6 2.1312 -1.1679 -0.0006 28 8 1.5016 -2.2118 -0.0010 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3635 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.5968 2.1093 0.0007 33 1 2.6747 3.6210 0.1103 34 1 5.0398 4.9562 -0.6646 35 1 5.0416 4.7952 1.1081 36 1 3.7326 6.0072 2.5216 37 1 1.9948 6.0275 1.9920 38 1 4.6839 8.5884 2.6477 39 1 5.1757 10.7303 5.1571 40 1 4.0570 7.9314 -0.6127 41 1 5.1857 7.3486 0.6864 42 1 5.8838 -1.0592 -0.0169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086270327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = -26.354999 kcal Electronic energy + Delta-G solvation = -26246.845598 eV Core-core repulsion = 22229.360733 eV Total energy + Delta-G solvation = -4017.484865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.39319 -39.98497 -39.06097 -38.38303 -37.26294 -35.13154 -34.82234 -33.41888 -32.05453 -30.26049 -28.26591 -27.38947 -25.56536 -25.17762 -24.32197 -23.63581 -21.31088 -21.18043 -20.25058 -19.25525 -18.74845 -18.30026 -17.19551 -17.10149 -16.68423 -16.15990 -15.73567 -15.47082 -15.21403 -14.92993 -14.80683 -14.62573 -14.17018 -13.90885 -13.82407 -13.55282 -13.35761 -13.23223 -13.01337 -12.15392 -11.97389 -11.88981 -11.47072 -11.41331 -11.30636 -10.90289 -10.63154 -10.57752 -10.53930 -10.34719 -10.16889 -9.98826 -9.89298 -9.56717 -9.29028 -9.05716 -8.92726 -7.01855 -5.83453 -3.12597 -0.02969 0.78251 1.75040 2.65661 2.72874 2.86270 3.32289 3.38430 3.43791 3.46458 3.51697 3.74475 4.17963 4.41425 4.53284 4.57233 4.60800 4.72491 4.87504 4.92173 4.98945 5.13499 5.32457 5.40164 5.41362 5.65529 5.74291 5.77118 5.85813 6.02832 6.13047 6.22695 6.27266 6.34022 6.50413 6.70083 6.74183 7.03798 7.18380 7.27119 7.60971 7.64152 7.99618 8.35054 9.46247 10.04292 10.38068 11.38902 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002217 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.249372 B =12627.743599 C =13330.472297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.518 5.518 3 C 0.243 3.757 4 C -0.294 4.294 5 C 0.575 3.425 6 O -0.513 6.513 7 N -0.725 5.725 8 C 0.134 3.866 9 C -0.128 4.128 10 H 0.088 0.912 11 C -0.162 4.162 12 C 0.165 3.835 13 H 0.074 0.926 14 N -0.713 5.713 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.142 4.142 24 C 0.495 3.505 25 O -0.411 6.411 26 N -0.615 5.615 27 C 0.654 3.346 28 O -0.525 6.525 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.188 0.812 33 H 0.393 0.607 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -18.862 -12.506 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.231 5.231 3 C 0.101 3.899 4 C -0.307 4.307 5 C 0.360 3.640 6 O -0.388 6.388 7 N -0.377 5.377 8 C 0.011 3.989 9 C -0.147 4.147 10 H 0.106 0.894 11 C -0.203 4.203 12 C 0.053 3.947 13 H 0.092 0.908 14 N -0.351 5.351 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.181 4.181 24 C 0.293 3.707 25 O -0.202 6.202 26 N -0.374 5.374 27 C 0.356 3.644 28 O -0.399 6.399 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.205 0.795 33 H 0.227 0.773 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.841 -19.709 -12.448 24.294 hybrid contribution -0.916 0.796 0.699 1.400 sum -7.757 -18.913 -11.749 23.578 Atomic orbital electron populations 1.22377 0.75272 1.06090 1.04894 1.46289 1.11123 1.07117 1.58596 1.22874 0.91792 0.91392 0.83799 1.19793 0.91783 0.94369 1.24757 1.17243 0.87226 0.82199 0.77355 1.90881 1.12918 1.86593 1.48417 1.45903 1.09969 1.06427 1.75439 1.21487 0.93979 0.81035 1.02357 1.22655 0.98548 0.93965 0.99560 0.89373 1.23969 1.00425 1.01799 0.94095 1.21514 0.95069 0.89181 0.88913 0.90778 1.42418 1.08586 1.46990 1.37109 1.19323 0.91713 1.15502 1.11030 0.91073 1.24780 0.95922 1.00507 0.99713 1.69669 1.10042 1.43867 1.34319 0.86128 0.79426 0.80663 0.80011 1.20550 1.21842 1.21816 1.23433 1.00381 0.93996 1.00327 1.20206 0.84978 0.88068 0.77451 1.85284 1.13964 1.36379 1.84579 1.69747 1.05449 1.27239 1.34922 1.17466 0.84753 0.82987 0.79211 1.91009 1.65906 1.29954 1.53026 0.89619 0.87875 0.88711 0.79470 0.77284 0.91336 0.90910 0.90251 0.92838 0.78038 0.93448 0.91934 0.89999 0.72984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 10.35 59.84 0.62 0.80 16 2 N -0.52 -3.51 2.96 -128.87 -0.38 -3.89 16 3 C 0.24 1.21 9.90 -16.15 -0.16 1.05 16 4 C -0.29 -2.53 5.90 -104.70 -0.62 -3.14 16 5 C 0.57 6.19 7.75 -12.57 -0.10 6.09 16 6 O -0.51 -7.72 15.32 -15.91 -0.24 -7.96 16 7 N -0.73 -6.18 5.51 -61.42 -0.34 -6.52 16 8 C 0.13 1.46 5.52 -4.04 -0.02 1.44 16 9 C -0.13 -1.42 3.75 -89.80 -0.34 -1.76 16 10 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.16 -2.34 7.44 -25.91 -0.19 -2.53 16 12 C 0.17 2.93 4.47 -67.12 -0.30 2.63 16 13 H 0.07 1.30 8.11 -51.92 -0.42 0.88 16 14 N -0.71 -16.96 5.41 -52.64 -0.28 -17.24 16 15 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 19 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.14 -2.02 7.39 -25.92 -0.19 -2.21 16 24 C 0.50 5.01 7.93 -15.91 -0.13 4.88 16 25 O -0.41 -3.90 11.78 -37.92 -0.45 -4.35 16 26 N -0.61 -7.13 10.38 -16.47 -0.17 -7.30 16 27 C 0.65 7.56 8.32 -88.50 -0.74 6.82 16 28 O -0.53 -7.74 16.67 5.00 0.08 -7.66 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.49 7.36 -51.92 -0.38 0.11 16 31 H 0.09 0.00 8.02 -51.93 -0.42 -0.42 16 32 H 0.19 0.04 6.48 -52.48 -0.34 -0.30 16 33 H 0.39 1.94 6.58 -40.82 -0.27 1.67 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 36 H 0.08 1.31 7.90 -51.93 -0.41 0.89 16 37 H 0.05 0.71 8.14 -51.94 -0.42 0.28 16 38 H 0.39 9.84 7.91 -40.82 -0.32 9.52 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 42 H 0.41 2.03 8.98 45.56 0.41 2.44 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -38.56 360.24 -7.70 -46.26 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.64 Total: 6.37 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -2.41 Total: 6.95 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.45 Total: -61.75 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.61 Total: -19.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.56 -7.70 -46.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086270327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.906 kcal (2) G-P(sol) polarization free energy of solvation -38.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds