Wall clock time and date at job start Fri Apr 10 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34947 * 119.70680 * 2 1 4 4 C 1.38322 * 119.02491 * 179.97438 * 3 2 1 5 5 C 1.47306 * 120.73862 * 179.97438 * 4 3 2 6 6 O 1.21622 * 119.99891 * 185.33221 * 5 4 3 7 7 N 1.34774 * 120.00023 * 5.33452 * 5 4 3 8 8 C 1.46498 * 119.99973 * 175.16800 * 7 5 4 9 9 C 1.53002 * 109.47099 * 179.72132 * 8 7 5 10 10 H 1.08996 * 112.85074 * 43.80467 * 9 8 7 11 11 C 1.53778 * 113.61337 * 175.00008 * 9 8 7 12 12 C 1.53785 * 87.08201 * 139.98141 * 11 9 8 13 13 H 1.08997 * 113.61005 * 219.93415 * 12 11 9 14 14 N 1.46495 * 113.61142 * 89.11694 * 12 11 9 15 15 C 1.36943 * 120.00014 * 155.00338 * 14 12 11 16 16 H 1.07997 * 119.99609 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99759 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00672 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99407 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47131 * 90.00034 * 19 17 15 21 21 H 1.48506 * 109.46668 * 209.99695 * 19 17 15 22 22 H 1.48495 * 109.47267 * 329.99988 * 19 17 15 23 23 C 1.53775 * 87.07971 * 334.56594 * 12 11 9 24 24 C 1.42098 * 118.52187 * 0.25686 * 4 3 2 25 25 O 1.35011 * 120.33229 * 179.75052 * 24 4 3 26 26 N 1.32215 * 119.33637 * 359.50159 * 24 4 3 27 27 C 1.33327 * 120.92792 * 0.50784 * 26 24 4 28 28 O 1.21907 * 119.19753 * 179.74631 * 27 26 24 29 29 H 1.08998 * 109.47450 * 89.99814 * 1 2 3 30 30 H 1.09000 * 109.47096 * 209.99927 * 1 2 3 31 31 H 1.09001 * 109.47101 * 329.99621 * 1 2 3 32 32 H 1.07999 * 120.48988 * 359.97438 * 3 2 1 33 33 H 0.96999 * 119.99792 * 354.88810 * 7 5 4 34 34 H 1.08997 * 109.47197 * 299.72732 * 8 7 5 35 35 H 1.09010 * 109.47383 * 59.72321 * 8 7 5 36 36 H 1.09001 * 113.61852 * 254.53268 * 11 9 8 37 37 H 1.09000 * 113.61917 * 25.35176 * 11 9 8 38 38 H 0.97001 * 120.00421 * 334.99686 * 14 12 11 39 39 H 0.96998 * 120.00159 * 180.02562 * 18 17 15 40 40 H 1.09003 * 113.61863 * 270.88291 * 23 12 11 41 41 H 1.09003 * 113.61224 * 139.97672 * 23 12 11 42 42 H 0.96698 * 114.00139 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1721 0.0000 4 6 3.5168 1.1557 0.0005 5 6 4.2848 2.4127 0.0000 6 8 5.4968 2.3848 -0.0974 7 7 3.6443 3.5937 0.1075 8 6 4.4125 4.8366 0.2135 9 6 3.4517 6.0228 0.3160 10 1 2.6223 5.8380 0.9986 11 6 4.1573 7.3682 0.5542 12 6 3.1456 7.9831 -0.4273 13 1 3.5827 8.7216 -1.0993 14 7 1.9171 8.4558 0.2158 15 6 1.1738 9.4448 -0.3713 16 1 1.4935 9.8766 -1.3081 17 6 0.0095 9.8923 0.2378 18 7 -0.3804 9.3658 1.3793 19 14 -1.0040 11.2419 -0.5627 20 1 -2.0084 10.6336 -1.4717 21 1 -1.6992 12.0281 0.4880 22 1 -0.1101 12.1369 -1.3407 23 6 3.0161 6.5824 -1.0485 24 6 4.1805 -0.1008 -0.0045 25 8 5.5293 -0.1595 -0.0092 26 7 3.4638 -1.2119 0.0005 27 6 2.1313 -1.1679 0.0000 28 8 1.5017 -2.2118 0.0000 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.5969 2.1093 -0.0004 33 1 2.6747 3.6210 0.1105 34 1 5.0413 4.8003 1.1032 35 1 5.0400 4.9525 -0.6703 36 1 4.0571 7.7394 1.5742 37 1 5.1860 7.3916 0.1945 38 1 1.6301 8.0682 1.0574 39 1 -1.1942 9.6782 1.8047 40 1 3.7323 6.3912 -1.8477 41 1 1.9944 6.3190 -1.3224 42 1 5.8838 -1.0592 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086551426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:38 Heat of formation + Delta-G solvation = -26.029238 kcal Electronic energy + Delta-G solvation = -26442.943019 eV Core-core repulsion = 22425.472280 eV Total energy + Delta-G solvation = -4017.470739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.33889 -39.94796 -39.04821 -38.40773 -37.21030 -35.07951 -34.78657 -33.35311 -32.00844 -30.17823 -28.19411 -27.38469 -25.50637 -25.14969 -24.23838 -23.57334 -21.86794 -21.16729 -20.20784 -18.82546 -18.69079 -18.08852 -17.32596 -17.13732 -16.59731 -16.11013 -15.64840 -15.45780 -15.10223 -14.92899 -14.80626 -14.27110 -14.18136 -14.04386 -13.76914 -13.58511 -13.31982 -13.15100 -12.97066 -12.38511 -12.05141 -11.99155 -11.48628 -11.37701 -11.12505 -10.91148 -10.58154 -10.54560 -10.53163 -10.27165 -10.19704 -9.90318 -9.77518 -9.56598 -9.24659 -9.01635 -8.95729 -7.08853 -5.89285 -3.18363 0.03079 0.82569 1.81681 2.70252 2.76852 2.91567 3.35486 3.36868 3.41743 3.42937 3.58949 3.81651 4.24735 4.48341 4.50035 4.63484 4.70674 4.77936 4.94659 4.99019 5.08297 5.14214 5.37059 5.38852 5.52051 5.62636 5.72063 5.78553 5.86571 6.01225 6.13528 6.26219 6.28969 6.50035 6.64243 6.72787 6.80482 6.94798 7.23450 7.32398 7.61521 7.65482 8.03323 8.30080 9.41006 9.97943 10.32022 11.33077 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002532 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.180129 B =11053.745376 C =12509.233250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.517 5.517 3 C 0.245 3.755 4 C -0.297 4.297 5 C 0.576 3.424 6 O -0.517 6.517 7 N -0.724 5.724 8 C 0.133 3.867 9 C -0.121 4.121 10 H 0.093 0.907 11 C -0.148 4.148 12 C 0.167 3.833 13 H 0.063 0.937 14 N -0.706 5.706 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.169 4.169 24 C 0.495 3.505 25 O -0.412 6.412 26 N -0.616 5.616 27 C 0.654 3.346 28 O -0.525 6.525 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.190 0.810 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -16.818 -2.088 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.230 5.230 3 C 0.103 3.897 4 C -0.310 4.310 5 C 0.361 3.639 6 O -0.393 6.393 7 N -0.376 5.376 8 C 0.010 3.990 9 C -0.140 4.140 10 H 0.111 0.889 11 C -0.187 4.187 12 C 0.054 3.946 13 H 0.081 0.919 14 N -0.344 5.344 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.210 4.210 24 C 0.293 3.707 25 O -0.203 6.203 26 N -0.374 5.374 27 C 0.356 3.644 28 O -0.399 6.399 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.207 0.793 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.445 -17.640 -2.219 18.911 hybrid contribution -1.452 0.731 -0.095 1.628 sum 4.993 -16.909 -2.314 17.782 Atomic orbital electron populations 1.22403 0.75132 1.06139 1.05053 1.46292 1.11214 1.07091 1.58413 1.22935 0.91829 0.91491 0.83403 1.19773 0.91768 0.94332 1.25079 1.17242 0.87191 0.82221 0.77253 1.90862 1.12942 1.86687 1.48778 1.45925 1.10197 1.06288 1.75232 1.21524 0.94063 0.81419 1.01951 1.22730 0.98396 0.92872 0.99961 0.88888 1.23445 0.98879 0.94931 1.01487 1.21056 0.87821 0.92386 0.93298 0.91938 1.42169 1.23117 1.43493 1.25661 1.19290 1.02663 1.11449 1.03963 0.90985 1.24755 0.98575 1.00228 0.97257 1.69650 1.25247 1.45307 1.17898 0.86179 0.80228 0.81561 0.78151 1.21679 1.21731 1.20666 1.23899 1.00901 1.01338 0.94834 1.20194 0.84920 0.88081 0.77514 1.85276 1.14019 1.36306 1.84705 1.69738 1.05486 1.27246 1.34970 1.17458 0.84742 0.83000 0.79220 1.91005 1.65920 1.29963 1.53012 0.89517 0.87883 0.88557 0.79333 0.77008 0.91543 0.91184 0.91293 0.90362 0.78140 0.93419 0.91278 0.91551 0.73074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 10.35 59.85 0.62 0.87 16 2 N -0.52 -4.05 2.96 -128.87 -0.38 -4.44 16 3 C 0.24 1.51 9.90 -16.15 -0.16 1.35 16 4 C -0.30 -2.75 5.90 -104.70 -0.62 -3.37 16 5 C 0.58 6.48 7.75 -12.57 -0.10 6.38 16 6 O -0.52 -7.79 15.32 -15.91 -0.24 -8.04 16 7 N -0.72 -6.88 5.51 -61.42 -0.34 -7.21 16 8 C 0.13 1.49 5.52 -4.04 -0.02 1.47 16 9 C -0.12 -1.53 3.63 -89.81 -0.33 -1.86 16 10 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 11 C -0.15 -2.12 7.39 -25.92 -0.19 -2.31 16 12 C 0.17 2.97 4.56 -67.12 -0.31 2.66 16 13 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 14 N -0.71 -16.21 5.31 -52.64 -0.28 -16.49 16 15 C -0.24 -6.33 9.97 -15.06 -0.15 -6.48 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 19 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.17 -2.45 7.43 -25.92 -0.19 -2.64 16 24 C 0.50 5.21 7.93 -15.91 -0.13 5.08 16 25 O -0.41 -3.96 11.78 -37.92 -0.45 -4.40 16 26 N -0.62 -7.44 10.38 -16.47 -0.17 -7.61 16 27 C 0.65 8.02 8.32 -88.49 -0.74 7.29 16 28 O -0.53 -8.10 16.67 5.00 0.08 -8.02 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.60 7.36 -51.93 -0.38 0.22 16 31 H 0.10 0.16 8.02 -51.93 -0.42 -0.26 16 32 H 0.19 0.38 6.48 -52.49 -0.34 0.04 16 33 H 0.40 2.69 6.58 -40.82 -0.27 2.42 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.83 7.84 -51.92 -0.41 0.43 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.38 9.31 7.90 -40.82 -0.32 8.99 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 40 H 0.07 0.90 7.90 -51.93 -0.41 0.49 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.41 2.06 8.98 45.56 0.41 2.47 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -36.95 360.10 -7.69 -44.64 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.64 Total: 7.66 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -2.40 Total: 8.03 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.45 Total: -61.58 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.61 Total: -20.46 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.95 -7.69 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086551426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.615 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds