Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.87672 * 2 1 4 4 C 1.54318 * 109.88334 * 238.97945 * 2 1 3 5 5 H 1.08993 * 110.72255 * 336.93232 * 4 2 1 6 6 N 1.46503 * 110.72154 * 100.02837 * 4 2 1 7 7 C 1.34774 * 120.00395 * 204.99802 * 6 4 2 8 8 O 1.21281 * 119.99515 * 0.02562 * 7 6 4 9 9 C 1.50693 * 120.00375 * 179.97438 * 7 6 4 10 10 N 1.46495 * 109.47540 * 180.02562 * 9 7 6 11 11 C 1.36165 * 119.85618 * 269.73015 * 10 9 7 12 12 C 1.35539 * 119.26141 * 180.28010 * 11 10 9 13 13 C 1.40732 * 119.00075 * 0.02562 * 12 11 10 14 14 O 1.35156 * 120.16843 * 180.02562 * 13 12 11 15 15 N 1.32430 * 119.67240 * 359.97438 * 13 12 11 16 16 C 1.33271 * 120.72499 * 359.97438 * 15 13 12 17 17 O 1.21972 * 119.47636 * 180.02562 * 16 15 13 18 18 C 1.55157 * 102.94533 * 218.39200 * 4 2 1 19 19 C 1.54917 * 101.57964 * 35.50073 * 18 4 2 20 20 N 1.47028 * 109.88132 * 121.17160 * 2 1 3 21 21 C 1.36931 * 125.64870 * 298.32264 * 20 2 1 22 22 H 1.08006 * 120.00319 * 0.02562 * 21 20 2 23 23 C 1.38814 * 120.00367 * 179.97438 * 21 20 2 24 24 N 1.31622 * 119.99505 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00519 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46805 * 90.00053 * 25 23 21 27 27 H 1.48502 * 109.47132 * 210.00212 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99964 * 25 23 21 29 29 H 1.08996 * 109.47285 * 181.02100 * 1 2 3 30 30 H 1.09003 * 109.46886 * 301.02034 * 1 2 3 31 31 H 1.09002 * 109.46734 * 61.01753 * 1 2 3 32 32 H 0.97002 * 119.99845 * 24.99862 * 6 4 2 33 33 H 1.08995 * 109.47261 * 60.00085 * 9 7 6 34 34 H 1.09007 * 109.47298 * 300.00405 * 9 7 6 35 35 H 1.08000 * 120.36602 * 0.24966 * 11 10 9 36 36 H 1.08005 * 120.49669 * 180.02562 * 12 11 10 37 37 H 0.96698 * 114.00361 * 179.97438 * 14 13 12 38 38 H 1.08996 * 111.01083 * 153.57456 * 18 4 2 39 39 H 1.09003 * 111.00724 * 277.43121 * 18 4 2 40 40 H 1.08998 * 110.36322 * 204.15032 * 19 18 4 41 41 H 1.08995 * 110.45641 * 81.87752 * 19 18 4 42 42 H 0.97003 * 119.99659 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2436 5 1 1.3040 -1.4415 -1.6220 6 7 2.4555 0.1991 -2.2872 7 6 2.4583 -0.1836 -3.5795 8 8 2.1287 -1.3118 -3.8785 9 6 2.8699 0.7907 -4.6529 10 7 2.7882 0.1382 -5.9620 11 6 3.8732 -0.5145 -6.4630 12 6 3.7860 -1.1090 -7.6779 13 6 2.5737 -1.0341 -8.3888 14 8 2.4605 -1.6189 -9.6020 15 7 1.5440 -0.3885 -7.8627 16 6 1.6427 0.1909 -6.6666 17 8 0.6799 0.7792 -6.2034 18 6 3.2876 -1.5134 -0.6944 19 6 2.8144 -1.8804 0.7344 20 7 2.0300 -0.7157 1.1830 21 6 1.8049 -0.3590 2.4858 22 1 1.2141 0.5165 2.7117 23 6 2.3352 -1.1231 3.5162 24 7 3.0548 -2.1903 3.2410 25 14 2.0276 -0.6369 5.2934 26 1 0.7870 -1.2933 5.7785 27 1 3.1758 -1.0685 6.1305 28 1 1.8755 0.8375 5.3840 29 1 -0.3633 -1.0274 0.0183 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4980 -0.8990 32 1 2.7188 1.1015 -2.0481 33 1 3.8938 1.1182 -4.4732 34 1 2.2041 1.6536 -4.6353 35 1 4.7930 -0.5575 -5.8988 36 1 4.6341 -1.6324 -8.0941 37 1 1.5903 -1.5128 -10.0101 38 1 3.4852 -2.4094 -1.2827 39 1 4.1654 -0.8680 -0.6614 40 1 3.6715 -2.0358 1.3896 41 1 2.1890 -2.7728 0.7110 42 1 3.4256 -2.7241 3.9610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088712738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = -27.225555 kcal Electronic energy + Delta-G solvation = -27160.110730 eV Core-core repulsion = 23142.588116 eV Total energy + Delta-G solvation = -4017.522615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09612 -39.85686 -38.89833 -37.64742 -36.89341 -34.79738 -34.17689 -32.17595 -31.57721 -30.44797 -29.25798 -28.01980 -25.24166 -24.66088 -24.04275 -23.49014 -20.95834 -20.30118 -20.05209 -19.79564 -18.44621 -17.68247 -17.61876 -16.81468 -16.15226 -15.99661 -15.71284 -15.21945 -14.99396 -14.73763 -14.51663 -14.23011 -14.02858 -13.82222 -13.61135 -13.41896 -12.92399 -12.64463 -12.25932 -12.18256 -11.96919 -11.61047 -11.19582 -11.04219 -10.90604 -10.88172 -10.67511 -10.61641 -10.48186 -10.13800 -10.11463 -9.90241 -9.79963 -9.61878 -8.87283 -8.80230 -8.69154 -6.93023 -5.70494 -3.13363 0.35268 1.41388 1.98044 2.48598 2.85790 3.09731 3.36722 3.41912 3.43510 3.59322 3.91604 4.15158 4.38459 4.42765 4.55318 4.68962 4.83394 5.01714 5.10453 5.21794 5.36947 5.47169 5.55729 5.73182 5.75119 6.04157 6.06521 6.15267 6.25030 6.29360 6.44192 6.53120 6.62162 6.71277 6.81836 7.03275 7.43498 7.49556 7.53745 7.57630 7.79101 7.91808 8.14692 8.29528 9.15657 9.76449 10.39791 11.33008 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034833 B = 0.002473 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.638941 B =11320.216072 C =11701.959264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.134 3.866 5 H 0.094 0.906 6 N -0.707 5.707 7 C 0.499 3.501 8 O -0.531 6.531 9 C 0.074 3.926 10 N -0.510 5.510 11 C 0.214 3.786 12 C -0.287 4.287 13 C 0.459 3.541 14 O -0.449 6.449 15 N -0.614 5.614 16 C 0.661 3.339 17 O -0.529 6.529 18 C -0.152 4.152 19 C 0.152 3.848 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.400 0.600 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.014 0.986 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 5.216 -21.775 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.112 0.888 6 N -0.358 5.358 7 C 0.283 3.717 8 O -0.407 6.407 9 C -0.052 4.052 10 N -0.226 5.226 11 C 0.078 3.922 12 C -0.314 4.314 13 C 0.257 3.743 14 O -0.243 6.243 15 N -0.371 5.371 16 C 0.363 3.637 17 O -0.403 6.403 18 C -0.191 4.191 19 C 0.027 3.973 20 N -0.320 5.320 21 C -0.349 4.349 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.235 0.765 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.200 0.800 36 H 0.183 0.817 37 H 0.274 0.726 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.033 0.967 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.441 4.697 -21.665 22.827 hybrid contribution 0.038 0.518 1.193 1.301 sum 5.479 5.215 -20.472 21.825 Atomic orbital electron populations 1.22249 0.97788 1.01509 1.00050 1.20992 0.92701 0.94757 0.86796 0.94560 1.22227 0.97793 0.90731 0.86250 0.88776 1.45969 1.67686 1.16492 1.05686 1.20502 0.78686 0.88718 0.83803 1.90760 1.47388 1.20526 1.81998 1.21865 1.06106 0.96902 0.80364 1.46020 1.12812 1.45562 1.18185 1.22347 0.91560 0.85583 0.92668 1.20585 0.99709 1.14048 0.97055 1.20426 0.89073 0.81248 0.83553 1.84981 1.41327 1.70116 1.27903 1.69650 1.29762 1.23413 1.14271 1.17267 0.82031 0.81925 0.82465 1.91019 1.34850 1.45473 1.68966 1.23394 0.96618 0.99210 0.99909 1.21952 0.97444 0.88455 0.89401 1.44486 1.59256 1.28199 1.00073 1.19026 1.27180 1.08211 0.80453 0.90417 1.24792 1.00337 0.97353 0.98103 1.69788 1.39118 1.17838 1.30242 0.86073 0.77279 0.77737 0.84394 1.21614 1.21656 1.20695 0.92937 0.92639 0.94225 0.76510 0.85656 0.84882 0.79979 0.81717 0.72620 0.92078 0.91899 0.87258 0.96748 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.13 37.16 0.34 -2.60 16 2 C 0.16 3.04 3.48 -66.95 -0.23 2.80 16 3 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 4 C 0.13 2.34 2.85 -66.10 -0.19 2.15 16 5 H 0.09 1.85 7.25 -51.93 -0.38 1.47 16 6 N -0.71 -9.29 5.18 -52.04 -0.27 -9.56 16 7 C 0.50 6.67 7.90 -10.99 -0.09 6.58 16 8 O -0.53 -9.52 16.07 5.56 0.09 -9.44 16 9 C 0.07 0.65 5.83 -5.20 -0.03 0.62 16 10 N -0.51 -5.40 2.08 -123.17 -0.26 -5.65 16 11 C 0.21 1.46 10.40 -16.59 -0.17 1.29 16 12 C -0.29 -1.99 10.03 -39.60 -0.40 -2.39 16 13 C 0.46 4.31 7.91 -16.35 -0.13 4.18 16 14 O -0.45 -3.00 13.55 -17.17 -0.23 -3.23 16 15 N -0.61 -8.18 10.40 -16.72 -0.17 -8.35 16 16 C 0.66 9.85 8.34 -88.43 -0.74 9.11 16 17 O -0.53 -9.89 16.72 4.94 0.08 -9.81 16 18 C -0.15 -2.82 6.77 -24.58 -0.17 -2.98 16 19 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 20 N -0.59 -14.44 3.13 -162.57 -0.51 -14.95 16 21 C -0.22 -5.88 9.89 -15.06 -0.15 -6.03 16 22 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.19 10.09 55.49 0.56 -25.63 16 25 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 4.02 8.37 -40.82 -0.34 3.68 16 33 H 0.13 0.46 8.03 -51.93 -0.42 0.04 16 34 H 0.13 1.16 7.39 -51.93 -0.38 0.78 16 35 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.42 1.41 8.98 45.56 0.41 1.82 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -38.67 356.60 -7.16 -45.83 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.74 Total: 2.91 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: -2.06 Total: 15.95 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.65 Total: -64.14 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.67 -7.16 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088712738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.605 kcal (2) G-P(sol) polarization free energy of solvation -38.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds