Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.87672 * 2 1 4 4 C 1.54318 * 109.88334 * 238.97945 * 2 1 3 5 5 H 1.08993 * 110.72255 * 336.93232 * 4 2 1 6 6 N 1.46503 * 110.72154 * 100.02837 * 4 2 1 7 7 C 1.34774 * 120.00395 * 204.99802 * 6 4 2 8 8 O 1.21281 * 119.99515 * 0.02562 * 7 6 4 9 9 C 1.50693 * 120.00375 * 179.97438 * 7 6 4 10 10 N 1.46495 * 109.47540 * 180.02562 * 9 7 6 11 11 C 1.36165 * 119.85618 * 269.73015 * 10 9 7 12 12 C 1.35539 * 119.26141 * 180.28010 * 11 10 9 13 13 C 1.40732 * 119.00075 * 0.02562 * 12 11 10 14 14 O 1.35156 * 120.16843 * 180.02562 * 13 12 11 15 15 N 1.32430 * 119.67240 * 359.97438 * 13 12 11 16 16 C 1.33271 * 120.72499 * 359.97438 * 15 13 12 17 17 O 1.21972 * 119.47636 * 180.02562 * 16 15 13 18 18 C 1.55157 * 102.94533 * 218.39200 * 4 2 1 19 19 C 1.54917 * 101.57964 * 35.50073 * 18 4 2 20 20 N 1.47028 * 109.88132 * 121.17160 * 2 1 3 21 21 C 1.36931 * 125.64870 * 298.32264 * 20 2 1 22 22 H 1.08006 * 120.00319 * 0.02562 * 21 20 2 23 23 C 1.38814 * 120.00367 * 179.97438 * 21 20 2 24 24 N 1.31622 * 119.99505 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00519 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46805 * 90.00053 * 25 23 21 27 27 H 1.48502 * 109.47132 * 210.00212 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99964 * 25 23 21 29 29 H 1.08996 * 109.47285 * 181.02100 * 1 2 3 30 30 H 1.09003 * 109.46886 * 301.02034 * 1 2 3 31 31 H 1.09002 * 109.46734 * 61.01753 * 1 2 3 32 32 H 0.97002 * 119.99845 * 24.99862 * 6 4 2 33 33 H 1.08995 * 109.47261 * 60.00085 * 9 7 6 34 34 H 1.09007 * 109.47298 * 300.00405 * 9 7 6 35 35 H 1.08000 * 120.36602 * 0.24966 * 11 10 9 36 36 H 1.08005 * 120.49669 * 180.02562 * 12 11 10 37 37 H 0.96698 * 114.00361 * 179.97438 * 14 13 12 38 38 H 1.08996 * 111.01083 * 153.57456 * 18 4 2 39 39 H 1.09003 * 111.00724 * 277.43121 * 18 4 2 40 40 H 1.08998 * 110.36322 * 204.15032 * 19 18 4 41 41 H 1.08995 * 110.45641 * 81.87752 * 19 18 4 42 42 H 0.97003 * 119.99659 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2436 5 1 1.3040 -1.4415 -1.6220 6 7 2.4555 0.1991 -2.2872 7 6 2.4583 -0.1836 -3.5795 8 8 2.1287 -1.3118 -3.8785 9 6 2.8699 0.7907 -4.6529 10 7 2.7882 0.1382 -5.9620 11 6 3.8732 -0.5145 -6.4630 12 6 3.7860 -1.1090 -7.6779 13 6 2.5737 -1.0341 -8.3888 14 8 2.4605 -1.6189 -9.6020 15 7 1.5440 -0.3885 -7.8627 16 6 1.6427 0.1909 -6.6666 17 8 0.6799 0.7792 -6.2034 18 6 3.2876 -1.5134 -0.6944 19 6 2.8144 -1.8804 0.7344 20 7 2.0300 -0.7157 1.1830 21 6 1.8049 -0.3590 2.4858 22 1 1.2141 0.5165 2.7117 23 6 2.3352 -1.1231 3.5162 24 7 3.0548 -2.1903 3.2410 25 14 2.0276 -0.6369 5.2934 26 1 0.7870 -1.2933 5.7785 27 1 3.1758 -1.0685 6.1305 28 1 1.8755 0.8375 5.3840 29 1 -0.3633 -1.0274 0.0183 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4980 -0.8990 32 1 2.7188 1.1015 -2.0481 33 1 3.8938 1.1182 -4.4732 34 1 2.2041 1.6536 -4.6353 35 1 4.7930 -0.5575 -5.8988 36 1 4.6341 -1.6324 -8.0941 37 1 1.5903 -1.5128 -10.0101 38 1 3.4852 -2.4094 -1.2827 39 1 4.1654 -0.8680 -0.6614 40 1 3.6715 -2.0358 1.3896 41 1 2.1890 -2.7728 0.7110 42 1 3.4256 -2.7241 3.9610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088712738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = -61.449178 kcal Electronic energy + Delta-G solvation = -27161.594778 eV Core-core repulsion = 23142.588116 eV Total energy + Delta-G solvation = -4019.006662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.88805 -40.98652 -39.71671 -39.10583 -37.80047 -35.69262 -35.53657 -33.89975 -32.34348 -32.06701 -30.76151 -29.17478 -26.43334 -25.87662 -25.66029 -24.37338 -22.31938 -21.67233 -21.40325 -20.75463 -19.11196 -18.79786 -18.62021 -18.40823 -17.31777 -16.90320 -16.86803 -16.52094 -16.19608 -15.73655 -15.62491 -15.43293 -15.21637 -14.81578 -14.72661 -14.38513 -14.25659 -14.01740 -13.83515 -13.29091 -13.25714 -13.04875 -12.93593 -12.76280 -12.63555 -12.25716 -12.13009 -12.02019 -11.98045 -11.59010 -11.45355 -11.41847 -10.95916 -10.94271 -10.73408 -10.07794 -9.66180 -8.90280 -7.75137 -5.19941 -0.29311 0.69426 1.24449 1.47623 1.48816 1.50179 1.58325 2.08330 2.28651 2.51547 2.73407 3.30628 3.35334 3.49484 3.63501 3.75974 3.82924 3.86004 3.94969 4.14070 4.19906 4.23172 4.46751 4.49034 4.60714 4.61638 4.68283 4.77823 4.91865 5.03086 5.10633 5.21051 5.30855 5.34992 5.50516 5.58073 5.60636 5.80741 6.17034 6.31087 6.46032 6.68286 7.05208 7.11662 7.15199 7.78973 8.41941 9.26636 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034833 B = 0.002473 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.638941 B =11320.216072 C =11701.959264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 H 0.059 0.941 4 C 0.152 3.848 5 H 0.069 0.931 6 N -0.695 5.695 7 C 0.499 3.501 8 O -0.580 6.580 9 C 0.081 3.919 10 N -0.513 5.513 11 C 0.217 3.783 12 C -0.286 4.286 13 C 0.455 3.545 14 O -0.441 6.441 15 N -0.659 5.659 16 C 0.649 3.351 17 O -0.591 6.591 18 C -0.132 4.132 19 C 0.155 3.845 20 N -0.613 5.613 21 C -0.226 4.226 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.950 5.950 25 Si 0.977 3.023 26 H -0.293 1.293 27 H -0.295 1.295 28 H -0.267 1.267 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.191 0.809 34 H 0.135 0.865 35 H 0.237 0.763 36 H 0.201 0.799 37 H 0.429 0.571 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.080 0.920 41 H -0.021 1.021 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 6.828 -23.054 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.077 0.923 4 C 0.046 3.954 5 H 0.087 0.913 6 N -0.347 5.347 7 C 0.285 3.715 8 O -0.460 6.460 9 C -0.044 4.044 10 N -0.228 5.228 11 C 0.083 3.917 12 C -0.311 4.311 13 C 0.256 3.744 14 O -0.237 6.237 15 N -0.418 5.418 16 C 0.351 3.649 17 O -0.470 6.470 18 C -0.171 4.171 19 C 0.030 3.970 20 N -0.338 5.338 21 C -0.355 4.355 22 H 0.102 0.898 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.191 1.191 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.208 0.792 34 H 0.153 0.847 35 H 0.253 0.747 36 H 0.218 0.782 37 H 0.289 0.711 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.098 0.902 41 H -0.003 1.003 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.718 6.337 -23.014 25.087 hybrid contribution -0.643 -0.054 1.455 1.591 sum 7.075 6.283 -21.559 23.544 Atomic orbital electron populations 1.22153 0.97337 1.00387 1.00982 1.21200 0.92981 0.95453 0.85959 0.92320 1.21685 0.96443 0.90827 0.86485 0.91258 1.45703 1.67462 1.16607 1.04957 1.21307 0.77181 0.88753 0.84220 1.90750 1.49417 1.23092 1.82694 1.22097 1.09719 0.94819 0.77767 1.45933 1.12659 1.45816 1.18344 1.23293 0.91893 0.83658 0.92848 1.21093 0.99551 1.13546 0.96918 1.20852 0.89256 0.80209 0.84049 1.84982 1.42418 1.69356 1.26964 1.69485 1.32149 1.25404 1.14755 1.17469 0.82598 0.81745 0.83053 1.90950 1.37190 1.48409 1.70484 1.23166 0.97559 0.99997 0.96415 1.21700 0.95694 0.87564 0.92080 1.44722 1.59721 1.28596 1.00783 1.19382 1.26309 1.08053 0.81781 0.89807 1.25587 1.00880 0.97730 1.01835 1.70032 1.40363 1.18906 1.30726 0.85095 0.76448 0.78042 0.79845 1.22052 1.22108 1.19120 0.95040 0.93264 0.91699 0.74205 0.79183 0.84736 0.74680 0.78216 0.71140 0.91512 0.89939 0.90196 1.00323 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 9.13 71.98 0.66 -4.86 16 2 C 0.15 5.71 3.48 45.34 0.16 5.87 16 3 H 0.06 2.01 7.71 -2.38 -0.02 1.99 16 4 C 0.15 5.11 2.85 46.18 0.13 5.24 16 5 H 0.07 2.73 7.25 -2.39 -0.02 2.72 16 6 N -0.69 -16.24 5.18 -436.94 -2.26 -18.50 16 7 C 0.50 12.04 7.90 87.66 0.69 12.73 16 8 O -0.58 -20.16 16.07 -3.03 -0.05 -20.21 16 9 C 0.08 1.13 5.83 85.63 0.50 1.63 16 10 N -0.51 -9.50 2.08 -661.80 -1.38 -10.88 16 11 C 0.22 2.02 10.40 83.40 0.87 2.89 16 12 C -0.29 -2.93 10.03 22.25 0.22 -2.71 16 13 C 0.45 7.84 7.91 85.21 0.67 8.51 16 14 O -0.44 -5.18 13.55 -84.34 -1.14 -6.32 16 15 N -0.66 -17.55 10.40 -438.82 -4.56 -22.11 16 16 C 0.65 19.20 8.34 179.58 1.50 20.70 16 17 O -0.59 -22.79 16.72 -5.23 -0.09 -22.87 16 18 C -0.13 -4.76 6.77 31.99 0.22 -4.55 16 19 C 0.16 7.51 5.89 86.86 0.51 8.02 16 20 N -0.61 -29.88 3.13 -668.26 -2.09 -31.97 16 21 C -0.23 -12.10 9.89 84.03 0.83 -11.27 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 23 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 24 N -0.95 -55.56 10.09 21.65 0.22 -55.34 16 25 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.42 6.69 8.37 -92.71 -0.78 5.92 16 33 H 0.19 0.12 8.03 -2.39 -0.02 0.11 16 34 H 0.13 1.97 7.39 -2.38 -0.02 1.95 16 35 H 0.24 -0.49 8.06 -2.91 -0.02 -0.51 16 36 H 0.20 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.43 2.55 8.98 -74.06 -0.66 1.89 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.08 4.37 5.87 -2.39 -0.01 4.35 16 41 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 42 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -91.25 356.60 -2.27 -93.52 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -0.36 Total: 9.05 kcal Atomic # 6 Polarization: 31.49 SS G_CDS: 7.42 Total: 38.91 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -10.07 Total: -138.81 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -1.28 Total: -49.41 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -91.25 -2.27 -93.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088712738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.069 kcal (2) G-P(sol) polarization free energy of solvation -91.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds