Wall clock time and date at job start Fri Apr 10 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.87285 * 2 1 4 4 C 1.54315 * 109.88689 * 238.82082 * 2 1 3 5 5 H 1.08997 * 110.72253 * 336.75316 * 4 2 1 6 6 N 1.46499 * 110.71914 * 100.02401 * 4 2 1 7 7 C 1.34778 * 120.00120 * 205.00114 * 6 4 2 8 8 O 1.21617 * 119.99749 * 354.89014 * 7 6 4 9 9 C 1.47309 * 120.00292 * 174.88841 * 7 6 4 10 10 C 1.38328 * 120.73290 * 5.27399 * 9 7 6 11 11 N 1.34951 * 119.01478 * 179.75014 * 10 9 7 12 12 C 1.46506 * 119.70029 * 180.26676 * 11 10 9 13 13 C 1.34449 * 120.59397 * 0.55141 * 11 10 9 14 14 O 1.21903 * 119.20559 * 179.71547 * 13 11 10 15 15 N 1.33327 * 121.59741 * 359.69556 * 13 11 10 16 16 C 1.32222 * 120.92970 * 0.02562 * 15 13 11 17 17 O 1.35013 * 120.33225 * 179.97438 * 16 15 13 18 18 C 1.55154 * 102.94487 * 218.38664 * 4 2 1 19 19 C 1.54913 * 101.58003 * 35.50427 * 18 4 2 20 20 N 1.47023 * 109.88242 * 121.01163 * 2 1 3 21 21 C 1.36942 * 125.64884 * 298.09240 * 20 2 1 22 22 H 1.07994 * 119.99973 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99868 * 179.97438 * 21 20 2 24 24 N 1.31617 * 120.00011 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99839 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47165 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46860 * 119.99690 * 25 23 21 28 28 H 1.48493 * 109.47146 * 240.00048 * 25 23 21 29 29 H 1.09001 * 109.47196 * 300.43575 * 1 2 3 30 30 H 1.08991 * 109.46875 * 60.44540 * 1 2 3 31 31 H 1.09006 * 109.46719 * 180.43888 * 1 2 3 32 32 H 0.97003 * 120.00323 * 25.00343 * 6 4 2 33 33 H 1.07998 * 120.49376 * 0.02562 * 10 9 7 34 34 H 1.09002 * 109.46907 * 180.28570 * 12 11 10 35 35 H 1.08999 * 109.46667 * 300.28239 * 12 11 10 36 36 H 1.08995 * 109.47164 * 60.28401 * 12 11 10 37 37 H 0.96698 * 113.99940 * 0.02562 * 17 16 15 38 38 H 1.09000 * 111.00371 * 153.57613 * 18 4 2 39 39 H 1.08997 * 111.00781 * 277.42479 * 18 4 2 40 40 H 1.08996 * 110.36260 * 204.14861 * 19 18 4 41 41 H 1.09002 * 110.36639 * 81.83150 * 19 18 4 42 42 H 0.97009 * 119.99602 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2415 5 1 1.3053 -1.4482 -1.6161 6 7 2.4555 0.1928 -2.2877 7 6 2.4583 -0.1934 -3.5789 8 8 2.2186 -1.3502 -3.8681 9 6 2.7516 0.7854 -4.6399 10 6 3.1321 2.0774 -4.3243 11 7 3.3974 2.9443 -5.3240 12 6 3.8073 4.3146 -5.0067 13 6 3.2835 2.5633 -6.6083 14 8 3.5244 3.3687 -7.4912 15 7 2.9139 1.3260 -6.9398 16 6 2.6443 0.4252 -6.0102 17 8 2.2704 -0.8243 -6.3595 18 6 3.2877 -1.5151 -0.6901 19 6 2.8146 -1.8783 0.7396 20 7 2.0300 -0.7123 1.1850 21 6 1.8087 -0.3495 2.4868 22 1 1.2212 0.5288 2.7101 23 6 2.3385 -1.1111 3.5192 24 7 3.0541 -2.1817 3.2470 25 14 2.0360 -0.6165 5.2950 26 1 1.2073 0.6152 5.3315 27 1 1.3238 -1.7127 5.9997 28 1 3.3357 -0.3593 5.9655 29 1 -0.3634 0.5206 0.8861 30 1 -0.3633 0.5069 -0.8939 31 1 -0.3633 -1.0277 0.0079 32 1 2.7188 1.0960 -2.0511 33 1 3.2198 2.3864 -3.2932 34 1 3.9727 4.8676 -5.9314 35 1 3.0243 4.8028 -4.4265 36 1 4.7296 4.2928 -4.4264 37 1 2.2275 -0.9694 -7.3146 38 1 3.4854 -2.4127 -1.2760 39 1 4.1655 -0.8697 -0.6590 40 1 3.6717 -2.0317 1.3952 41 1 2.1888 -2.7705 0.7169 42 1 3.4247 -2.7137 3.9686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089035461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:47 Heat of formation + Delta-G solvation = -26.180524 kcal Electronic energy + Delta-G solvation = -27420.691176 eV Core-core repulsion = 23403.213877 eV Total energy + Delta-G solvation = -4017.477299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.27358 -39.84777 -38.89819 -37.56770 -37.10799 -35.01675 -34.17793 -32.47897 -31.43550 -30.41801 -28.65015 -28.05515 -25.48947 -25.12108 -24.07130 -23.63223 -21.16330 -20.35170 -20.13909 -19.90863 -18.58873 -18.03077 -17.06463 -16.84188 -16.51135 -16.07635 -15.54468 -15.09412 -15.05265 -14.69753 -14.46543 -14.07474 -13.97117 -13.79281 -13.71161 -13.42687 -13.13209 -12.86422 -12.21062 -12.13762 -11.88518 -11.63605 -11.28871 -11.20244 -10.92362 -10.91053 -10.66228 -10.51859 -10.47359 -10.39673 -10.12547 -9.86799 -9.78544 -9.62089 -9.08958 -8.75586 -8.67985 -6.94489 -5.72028 -3.15245 0.09633 0.90842 1.87376 2.79224 2.90524 3.06983 3.34512 3.40097 3.42684 3.45593 3.64720 3.88705 4.34266 4.42779 4.60108 4.66972 4.73429 4.87374 5.10572 5.21391 5.35082 5.44892 5.47398 5.55415 5.74041 5.78724 6.03738 6.15884 6.22850 6.26908 6.45211 6.51549 6.66005 6.79069 6.81149 7.01848 7.31334 7.45283 7.54986 7.56382 7.71681 7.79187 8.23611 8.29313 9.13946 9.74913 10.38097 11.31196 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.002862 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.643961 B = 9781.232498 C =10458.053795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.138 3.862 5 H 0.096 0.904 6 N -0.715 5.715 7 C 0.576 3.424 8 O -0.513 6.513 9 C -0.291 4.291 10 C 0.242 3.758 11 N -0.519 5.519 12 C 0.050 3.950 13 C 0.655 3.345 14 O -0.529 6.529 15 N -0.617 5.617 16 C 0.496 3.504 17 O -0.410 6.410 18 C -0.153 4.153 19 C 0.152 3.848 20 N -0.595 5.595 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.391 0.609 33 H 0.189 0.811 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.413 0.587 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.015 0.985 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 10.085 -14.533 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.034 3.966 5 H 0.114 0.886 6 N -0.367 5.367 7 C 0.360 3.640 8 O -0.388 6.388 9 C -0.304 4.304 10 C 0.101 3.899 11 N -0.232 5.232 12 C -0.092 4.092 13 C 0.357 3.643 14 O -0.403 6.403 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.201 6.201 18 C -0.193 4.193 19 C 0.027 3.973 20 N -0.321 5.321 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.225 0.775 33 H 0.206 0.794 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.033 0.967 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.815 9.536 -15.427 18.154 hybrid contribution -0.066 0.788 1.309 1.530 sum 0.748 10.324 -14.117 17.506 Atomic orbital electron populations 1.22252 0.97850 1.01528 0.99941 1.20990 0.92649 0.94676 0.86967 0.94793 1.22191 0.97804 0.90631 0.86005 0.88560 1.45934 1.68819 1.16082 1.05838 1.17204 0.77962 0.87101 0.81708 1.90868 1.48062 1.17687 1.82148 1.19856 1.21840 0.95347 0.93310 1.22861 0.84208 0.87536 0.95327 1.46220 1.54730 1.14123 1.08152 1.22412 1.01957 0.79728 1.05122 1.17456 0.79710 0.86347 0.80817 1.90984 1.53223 1.50643 1.45475 1.69735 1.32167 1.02565 1.33072 1.20216 0.77994 0.84179 0.88238 1.85299 1.79081 1.23347 1.32337 1.23408 0.96631 0.99484 0.99756 1.21960 0.97392 0.88411 0.89547 1.44498 1.59294 1.28211 1.00050 1.19051 1.27418 1.08033 0.80486 0.90410 1.24791 1.00339 0.97314 0.98063 1.69806 1.39190 1.17674 1.30086 0.86022 0.77348 0.77569 0.84652 1.20556 1.21745 1.21759 0.92688 0.94340 0.92856 0.77470 0.79415 0.87160 0.89333 0.89326 0.73115 0.91792 0.91996 0.87333 0.96664 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.14 37.16 0.34 -2.31 16 2 C 0.16 2.80 3.48 -66.96 -0.23 2.57 16 3 H 0.03 0.58 7.72 -51.93 -0.40 0.17 16 4 C 0.14 2.24 2.80 -66.10 -0.19 2.05 16 5 H 0.10 1.71 7.34 -51.93 -0.38 1.33 16 6 N -0.72 -8.65 5.13 -53.15 -0.27 -8.92 16 7 C 0.58 7.55 7.75 -12.57 -0.10 7.45 16 8 O -0.51 -8.81 15.01 -15.90 -0.24 -9.05 16 9 C -0.29 -2.99 5.90 -104.70 -0.62 -3.61 16 10 C 0.24 1.63 9.97 -16.15 -0.16 1.46 16 11 N -0.52 -4.20 2.96 -128.87 -0.38 -4.58 16 12 C 0.05 0.22 10.57 59.85 0.63 0.86 16 13 C 0.65 8.26 8.32 -88.50 -0.74 7.53 16 14 O -0.53 -8.25 16.42 5.01 0.08 -8.17 16 15 N -0.62 -7.81 10.38 -16.47 -0.17 -7.98 16 16 C 0.50 5.65 7.93 -15.91 -0.13 5.52 16 17 O -0.41 -4.38 11.78 -37.91 -0.45 -4.82 16 18 C -0.15 -2.78 6.77 -24.58 -0.17 -2.95 16 19 C 0.15 3.49 5.89 -2.53 -0.01 3.47 16 20 N -0.60 -13.86 3.13 -162.58 -0.51 -14.37 16 21 C -0.22 -5.72 9.88 -15.06 -0.15 -5.86 16 22 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -25.64 10.09 55.49 0.56 -25.08 16 25 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 H 0.05 0.97 8.03 -51.93 -0.42 0.56 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.39 3.35 6.48 -40.82 -0.26 3.09 16 33 H 0.19 0.46 6.48 -52.49 -0.34 0.12 16 34 H 0.11 0.68 6.82 -51.93 -0.35 0.32 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.41 2.44 8.98 45.56 0.41 2.85 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.11 2.82 5.88 -51.93 -0.31 2.52 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -36.61 350.51 -7.29 -43.90 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.56 Total: 1.93 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -1.61 Total: 15.83 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.77 Total: -60.94 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.60 Total: -22.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.61 -7.29 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089035461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.717 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds