Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34880 * 120.30661 * 2 1 4 4 C 1.38045 * 119.94973 * 180.02562 * 3 2 1 5 5 C 1.47580 * 119.73032 * 179.97438 * 4 3 2 6 6 O 1.21598 * 119.99561 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00234 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99766 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46194 * 324.97196 * 8 7 5 10 10 C 1.53044 * 109.45065 * 84.94197 * 8 7 5 11 11 C 1.52755 * 109.38132 * 181.25215 * 10 8 7 12 12 N 1.46923 * 109.00900 * 305.58408 * 11 10 8 13 13 C 1.36943 * 120.62930 * 233.58508 * 12 11 10 14 14 H 1.08004 * 119.99477 * 152.17479 * 13 12 11 15 15 C 1.38811 * 119.99955 * 332.17173 * 13 12 11 16 16 N 1.31614 * 120.00254 * 342.76805 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 162.76720 * 15 13 12 18 18 H 1.48495 * 109.47047 * 270.00192 * 17 15 13 19 19 H 1.48504 * 109.46831 * 30.00016 * 17 15 13 20 20 H 1.48496 * 109.47210 * 149.99747 * 17 15 13 21 21 C 1.46927 * 118.73893 * 53.31139 * 12 11 10 22 22 C 1.53046 * 109.45682 * 204.99749 * 8 7 5 23 23 H 1.08998 * 109.52193 * 58.66332 * 22 8 7 24 24 O 1.42894 * 109.49909 * 298.58243 * 22 8 7 25 25 N 1.34153 * 120.54810 * 0.26433 * 4 3 2 26 26 C 1.30614 * 120.62367 * 359.47395 * 25 4 3 27 27 C 1.34956 * 120.31048 * 180.02562 * 2 1 3 28 28 O 1.21856 * 120.27197 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46978 * 89.99628 * 1 2 3 30 30 H 1.09000 * 109.46717 * 209.99546 * 1 2 3 31 31 H 1.08998 * 109.47197 * 329.99127 * 1 2 3 32 32 H 1.08004 * 120.02386 * 0.05530 * 3 2 1 33 33 H 0.97004 * 120.00158 * 0.02562 * 7 5 4 34 34 H 1.09007 * 109.49256 * 301.32587 * 10 8 7 35 35 H 1.08998 * 109.49776 * 61.39253 * 10 8 7 36 36 H 1.09005 * 109.50719 * 185.70148 * 11 10 8 37 37 H 1.09006 * 109.43430 * 65.42411 * 11 10 8 38 38 H 0.97000 * 119.99965 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.58525 * 66.43417 * 21 12 11 40 40 H 1.08995 * 109.58430 * 186.71314 * 21 12 11 41 41 H 0.96705 * 113.99942 * 180.16232 * 24 22 8 42 42 H 1.07999 * 119.97904 * 180.23681 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1645 0.0000 4 6 3.5261 1.1559 -0.0005 5 6 4.2659 2.4328 -0.0011 6 8 3.6595 3.4868 -0.0006 7 7 5.6136 2.4308 -0.0022 8 6 6.3480 3.6985 -0.0022 9 1 5.8013 4.4349 -0.5913 10 6 6.4944 4.2026 1.4354 11 6 7.2329 5.5398 1.4310 12 7 8.5056 5.3812 0.7142 13 6 9.6876 5.7455 1.3021 14 1 10.6060 5.2528 1.0189 15 6 9.7052 6.7482 2.2620 16 7 8.6858 7.5736 2.3702 17 14 11.1759 6.9258 3.4000 18 1 10.9605 6.1054 4.6188 19 1 12.4014 6.4620 2.7012 20 1 11.3349 8.3513 3.7845 21 6 8.4868 4.8186 -0.6429 22 6 7.7347 3.4844 -0.6131 23 1 7.6303 3.1029 -1.6288 24 8 8.4640 2.5433 0.1772 25 7 4.2007 -0.0037 -0.0064 26 6 3.5638 -1.1440 -0.0014 27 6 2.1461 -1.1651 -0.0005 28 8 1.5476 -2.2265 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6110 2.1029 0.0009 33 1 6.0974 1.5900 -0.0029 34 1 5.5066 4.3326 1.8777 35 1 7.0619 3.4778 2.0191 36 1 7.4278 5.8514 2.4572 37 1 6.6218 6.2900 0.9290 38 1 8.6981 8.2740 3.0412 39 1 7.9801 5.5088 -1.3176 40 1 9.5087 4.6569 -0.9857 41 1 9.3552 2.3610 -0.1511 42 1 4.1174 -2.0713 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090440352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = -40.800455 kcal Electronic energy + Delta-G solvation = -27370.835482 eV Core-core repulsion = 23352.724215 eV Total energy + Delta-G solvation = -4018.111267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22850 -39.79462 -38.24291 -37.50422 -36.34775 -34.90415 -34.28723 -31.87138 -30.93575 -29.90588 -29.00085 -28.55495 -25.60795 -24.87344 -24.25234 -22.37304 -21.99432 -20.60676 -19.56704 -18.97257 -18.30324 -17.29523 -17.06091 -16.88883 -16.13167 -15.88686 -15.67475 -14.95496 -14.83806 -14.71543 -14.45467 -14.12703 -13.97241 -13.88903 -13.61208 -13.20566 -13.09242 -12.94694 -12.60994 -12.07888 -12.01750 -11.83686 -11.47221 -11.20857 -11.02292 -10.84671 -10.70758 -10.31024 -10.23448 -10.12418 -10.01655 -9.77688 -9.59611 -9.30642 -8.77901 -8.53075 -8.37067 -6.66640 -5.77502 -3.19686 0.11277 0.91593 1.80561 2.68857 3.20860 3.39783 3.46535 3.47173 3.49434 3.77728 3.84627 4.25650 4.41689 4.48906 4.62444 4.70205 4.73383 4.94065 4.99457 5.26686 5.36108 5.38812 5.42568 5.61646 5.64071 5.77972 5.96461 6.06771 6.25450 6.40528 6.50461 6.59175 6.64955 6.83419 6.92192 7.09097 7.27153 7.42061 7.68284 7.78197 7.80113 8.13233 8.34551 8.45632 9.21013 9.83865 10.39817 11.30986 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027646 B = 0.002686 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.555319 B =10422.949580 C =10714.890506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.482 5.482 3 C 0.170 3.830 4 C -0.071 4.071 5 C 0.583 3.417 6 O -0.547 6.547 7 N -0.696 5.696 8 C 0.161 3.839 9 H 0.092 0.908 10 C -0.143 4.143 11 C 0.174 3.826 12 N -0.582 5.582 13 C -0.249 4.249 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.280 1.280 20 H -0.292 1.292 21 C 0.119 3.881 22 C 0.082 3.918 23 H 0.046 0.954 24 O -0.553 6.553 25 N -0.370 5.370 26 C 0.038 3.962 27 C 0.474 3.526 28 O -0.525 6.525 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.373 0.627 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -14.824 -6.942 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.192 5.192 3 C 0.034 3.966 4 C -0.195 4.195 5 C 0.367 3.633 6 O -0.426 6.426 7 N -0.345 5.345 8 C 0.057 3.943 9 H 0.110 0.890 10 C -0.184 4.184 11 C 0.048 3.952 12 N -0.304 5.304 13 C -0.378 4.378 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.205 1.205 20 H -0.219 1.219 21 C -0.009 4.009 22 C 0.021 3.979 23 H 0.064 0.936 24 O -0.358 6.358 25 N -0.085 5.085 26 C -0.152 4.152 27 C 0.271 3.729 28 O -0.401 6.401 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.206 0.794 33 H 0.248 0.752 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -14.253 -14.374 -6.490 21.257 hybrid contribution 0.510 -0.247 0.294 0.639 sum -13.743 -14.621 -6.196 21.000 Atomic orbital electron populations 1.22403 0.75623 1.05931 1.04853 1.45615 1.10333 1.06967 1.56295 1.23284 0.93698 0.91077 0.88511 1.20579 0.89627 0.93436 1.15827 1.17213 0.82797 0.86228 0.77022 1.90818 1.68523 1.31249 1.51985 1.45976 1.05194 1.11130 1.72235 1.21101 0.89539 0.84440 0.99180 0.88988 1.22430 1.00113 1.01368 0.94454 1.20690 0.84883 0.90149 0.99513 1.43901 1.03783 1.72613 1.10115 1.19134 0.86659 1.13186 1.18861 0.91757 1.25027 0.97625 0.95432 1.01596 1.70034 1.31574 1.17588 1.35422 0.86277 0.82287 0.76771 0.81313 1.21459 1.20504 1.21852 1.21542 0.98188 0.91958 0.89223 1.22614 0.91526 0.91762 0.92047 0.93606 1.86459 1.30611 1.62832 1.55921 1.67701 1.40525 0.97820 1.02489 1.24745 0.89220 0.97629 1.03595 1.18850 0.90840 0.83323 0.79901 1.90948 1.70644 1.28053 1.50415 0.89588 0.88102 0.88616 0.79396 0.75244 0.92967 0.91468 0.89152 0.96272 0.93612 0.95506 0.91992 0.78102 0.78953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 10.43 59.85 0.62 0.87 16 2 N -0.48 -3.94 2.97 -126.20 -0.38 -4.32 16 3 C 0.17 1.50 9.90 -16.28 -0.16 1.34 16 4 C -0.07 -0.83 6.71 -83.11 -0.56 -1.38 16 5 C 0.58 8.63 7.75 -12.45 -0.10 8.53 16 6 O -0.55 -9.41 15.94 5.28 0.08 -9.33 16 7 N -0.70 -10.56 5.04 -54.79 -0.28 -10.83 16 8 C 0.16 2.82 2.20 -67.88 -0.15 2.67 16 9 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 10 C -0.14 -2.92 5.49 -26.83 -0.15 -3.07 16 11 C 0.17 4.20 5.28 -3.94 -0.02 4.18 16 12 N -0.58 -14.19 2.94 -172.58 -0.51 -14.69 16 13 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 14 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 15 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 16 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 17 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 C 0.12 2.33 6.16 -3.71 -0.02 2.31 16 22 C 0.08 1.34 3.38 -26.61 -0.09 1.26 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 O -0.55 -9.02 12.09 -35.23 -0.43 -9.45 16 25 N -0.37 -4.16 9.62 -9.34 -0.09 -4.25 16 26 C 0.04 0.37 11.23 -16.71 -0.19 0.18 16 27 C 0.47 4.90 7.45 -14.82 -0.11 4.79 16 28 O -0.52 -6.70 16.74 5.05 0.08 -6.61 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.54 7.46 -51.93 -0.39 0.15 16 31 H 0.10 0.22 8.04 -51.93 -0.42 -0.20 16 32 H 0.19 1.29 7.58 -52.48 -0.40 0.89 16 33 H 0.41 5.87 7.57 -40.82 -0.31 5.56 16 34 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.07 1.45 7.61 -51.93 -0.40 1.06 16 36 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.37 4.79 9.08 45.56 0.41 5.20 16 42 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -34.36 351.79 -6.46 -40.82 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.70 Total: 7.43 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -1.15 Total: 14.80 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.63 Total: -59.59 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.26 Total: -25.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.36 -6.46 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090440352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.021 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds