Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34880 * 120.30661 * 2 1 4 4 C 1.38045 * 119.94973 * 180.02562 * 3 2 1 5 5 C 1.47580 * 119.73032 * 179.97438 * 4 3 2 6 6 O 1.21598 * 119.99561 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00234 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99766 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46194 * 324.97196 * 8 7 5 10 10 C 1.53044 * 109.45065 * 84.94197 * 8 7 5 11 11 C 1.52755 * 109.38132 * 181.25215 * 10 8 7 12 12 N 1.46923 * 109.00900 * 305.58408 * 11 10 8 13 13 C 1.36943 * 120.62930 * 233.58508 * 12 11 10 14 14 H 1.08004 * 119.99477 * 152.17479 * 13 12 11 15 15 C 1.38811 * 119.99955 * 332.17173 * 13 12 11 16 16 N 1.31614 * 120.00254 * 342.76805 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 162.76720 * 15 13 12 18 18 H 1.48495 * 109.47047 * 270.00192 * 17 15 13 19 19 H 1.48504 * 109.46831 * 30.00016 * 17 15 13 20 20 H 1.48496 * 109.47210 * 149.99747 * 17 15 13 21 21 C 1.46927 * 118.73893 * 53.31139 * 12 11 10 22 22 C 1.53046 * 109.45682 * 204.99749 * 8 7 5 23 23 H 1.08998 * 109.52193 * 58.66332 * 22 8 7 24 24 O 1.42894 * 109.49909 * 298.58243 * 22 8 7 25 25 N 1.34153 * 120.54810 * 0.26433 * 4 3 2 26 26 C 1.30614 * 120.62367 * 359.47395 * 25 4 3 27 27 C 1.34956 * 120.31048 * 180.02562 * 2 1 3 28 28 O 1.21856 * 120.27197 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46978 * 89.99628 * 1 2 3 30 30 H 1.09000 * 109.46717 * 209.99546 * 1 2 3 31 31 H 1.08998 * 109.47197 * 329.99127 * 1 2 3 32 32 H 1.08004 * 120.02386 * 0.05530 * 3 2 1 33 33 H 0.97004 * 120.00158 * 0.02562 * 7 5 4 34 34 H 1.09007 * 109.49256 * 301.32587 * 10 8 7 35 35 H 1.08998 * 109.49776 * 61.39253 * 10 8 7 36 36 H 1.09005 * 109.50719 * 185.70148 * 11 10 8 37 37 H 1.09006 * 109.43430 * 65.42411 * 11 10 8 38 38 H 0.97000 * 119.99965 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.58525 * 66.43417 * 21 12 11 40 40 H 1.08995 * 109.58430 * 186.71314 * 21 12 11 41 41 H 0.96705 * 113.99942 * 180.16232 * 24 22 8 42 42 H 1.07999 * 119.97904 * 180.23681 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1645 0.0000 4 6 3.5261 1.1559 -0.0005 5 6 4.2659 2.4328 -0.0011 6 8 3.6595 3.4868 -0.0006 7 7 5.6136 2.4308 -0.0022 8 6 6.3480 3.6985 -0.0022 9 1 5.8013 4.4349 -0.5913 10 6 6.4944 4.2026 1.4354 11 6 7.2329 5.5398 1.4310 12 7 8.5056 5.3812 0.7142 13 6 9.6876 5.7455 1.3021 14 1 10.6060 5.2528 1.0189 15 6 9.7052 6.7482 2.2620 16 7 8.6858 7.5736 2.3702 17 14 11.1759 6.9258 3.4000 18 1 10.9605 6.1054 4.6188 19 1 12.4014 6.4620 2.7012 20 1 11.3349 8.3513 3.7845 21 6 8.4868 4.8186 -0.6429 22 6 7.7347 3.4844 -0.6131 23 1 7.6303 3.1029 -1.6288 24 8 8.4640 2.5433 0.1772 25 7 4.2007 -0.0037 -0.0064 26 6 3.5638 -1.1440 -0.0014 27 6 2.1461 -1.1651 -0.0005 28 8 1.5476 -2.2265 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6110 2.1029 0.0009 33 1 6.0974 1.5900 -0.0029 34 1 5.5066 4.3326 1.8777 35 1 7.0619 3.4778 2.0191 36 1 7.4278 5.8514 2.4572 37 1 6.6218 6.2900 0.9290 38 1 8.6981 8.2740 3.0412 39 1 7.9801 5.5088 -1.3176 40 1 9.5087 4.6569 -0.9857 41 1 9.3552 2.3610 -0.1511 42 1 4.1174 -2.0713 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090440352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -68.806893 kcal Electronic energy + Delta-G solvation = -27372.049932 eV Core-core repulsion = 23352.724215 eV Total energy + Delta-G solvation = -4019.325717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.00038 -41.03036 -39.54949 -38.51776 -37.07853 -36.55447 -35.63796 -33.65209 -32.07033 -31.35850 -30.33287 -29.39271 -27.14589 -25.81332 -25.25872 -23.95808 -23.58771 -21.77854 -21.08963 -19.79227 -19.38064 -18.83809 -18.05080 -17.60605 -17.49451 -17.20137 -16.81219 -16.50564 -16.00683 -15.85323 -15.62791 -15.43822 -15.36011 -15.01024 -14.65468 -14.54913 -14.46694 -13.80180 -13.65762 -13.56297 -13.47842 -12.95709 -12.79593 -12.71151 -12.63736 -12.39283 -12.07832 -12.06023 -12.02016 -11.87234 -11.47393 -11.18989 -10.83374 -10.56677 -10.48328 -10.02374 -9.36774 -8.64677 -7.84028 -5.28370 -0.60017 0.04180 1.13636 1.48469 1.51202 1.58698 1.71187 2.13010 2.53374 2.58443 2.98786 3.05146 3.31115 3.43593 3.53381 3.69789 3.81587 3.88644 4.07833 4.09560 4.21254 4.30839 4.31341 4.41517 4.66693 4.69961 4.75268 4.81447 4.89950 4.91719 5.00422 5.04156 5.15878 5.34631 5.48968 5.53331 5.66815 5.73098 6.27454 6.40664 6.45502 6.67098 7.02403 7.17101 7.19847 7.87174 8.39027 9.22767 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027646 B = 0.002686 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.555319 B =10422.949580 C =10714.890506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.475 5.475 3 C 0.197 3.803 4 C -0.095 4.095 5 C 0.584 3.416 6 O -0.575 6.575 7 N -0.692 5.692 8 C 0.167 3.833 9 H 0.082 0.918 10 C -0.126 4.126 11 C 0.183 3.817 12 N -0.599 5.599 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.056 4.056 16 N -0.938 5.938 17 Si 0.966 3.034 18 H -0.290 1.290 19 H -0.265 1.265 20 H -0.298 1.298 21 C 0.112 3.888 22 C 0.098 3.902 23 H 0.084 0.916 24 O -0.564 6.564 25 N -0.382 5.382 26 C 0.039 3.961 27 C 0.471 3.529 28 O -0.551 6.551 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.212 0.788 33 H 0.418 0.582 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.053 0.947 37 H -0.004 1.004 38 H 0.248 0.752 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.390 0.610 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -16.667 -7.952 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.184 5.184 3 C 0.060 3.940 4 C -0.219 4.219 5 C 0.370 3.630 6 O -0.456 6.456 7 N -0.341 5.341 8 C 0.063 3.937 9 H 0.100 0.900 10 C -0.166 4.166 11 C 0.057 3.943 12 N -0.322 5.322 13 C -0.381 4.381 14 H 0.090 0.910 15 C -0.251 4.251 16 N -0.584 5.584 17 Si 0.795 3.205 18 H -0.217 1.217 19 H -0.189 1.189 20 H -0.225 1.225 21 C -0.014 4.014 22 C 0.037 3.963 23 H 0.102 0.898 24 O -0.371 6.371 25 N -0.097 5.097 26 C -0.151 4.151 27 C 0.268 3.732 28 O -0.429 6.429 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.229 0.771 33 H 0.255 0.745 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.014 0.986 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.239 0.761 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -14.612 -16.269 -7.535 23.129 hybrid contribution 0.530 0.285 0.559 0.822 sum -14.082 -15.983 -6.976 22.415 Atomic orbital electron populations 1.22737 0.73238 1.07160 1.06320 1.45748 1.11793 1.06186 1.54637 1.23463 0.92877 0.91897 0.85770 1.20159 0.90503 0.92365 1.18888 1.17570 0.82505 0.87037 0.75850 1.90801 1.68942 1.32658 1.53219 1.45771 1.05488 1.10279 1.72596 1.20807 0.90795 0.85410 0.96714 0.89979 1.22134 0.98884 0.98850 0.96713 1.20384 0.85264 0.91547 0.97117 1.44101 1.02956 1.72949 1.12155 1.19514 0.87708 1.12372 1.18547 0.90980 1.25787 1.00206 0.95665 1.03393 1.70192 1.33639 1.18433 1.36161 0.85280 0.79921 0.76064 0.79259 1.21747 1.18922 1.22512 1.21797 0.99701 0.93308 0.86630 1.22378 0.90126 0.90049 0.93757 0.89801 1.86429 1.31942 1.62292 1.56463 1.67644 1.40891 0.97986 1.03167 1.25045 0.89216 0.97863 1.02959 1.18988 0.91191 0.83468 0.79505 1.90940 1.71219 1.29068 1.51680 0.88005 0.88687 0.85651 0.77110 0.74477 0.93376 0.92626 0.92861 0.98615 0.94289 0.95592 0.90626 0.76123 0.76940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.43 127.77 1.33 1.62 16 2 N -0.48 -6.58 2.97 -671.22 -2.00 -8.58 16 3 C 0.20 2.99 9.90 84.18 0.83 3.82 16 4 C -0.10 -2.07 6.71 41.21 0.28 -1.79 16 5 C 0.58 16.57 7.75 86.71 0.67 17.24 16 6 O -0.58 -19.33 15.94 -4.02 -0.06 -19.39 16 7 N -0.69 -20.04 5.04 -445.50 -2.25 -22.28 16 8 C 0.17 5.72 2.20 45.02 0.10 5.82 16 9 H 0.08 3.01 7.58 -2.39 -0.02 2.99 16 10 C -0.13 -5.18 5.49 30.53 0.17 -5.02 16 11 C 0.18 9.18 5.28 86.22 0.46 9.63 16 12 N -0.60 -29.37 2.94 -699.93 -2.06 -31.43 16 13 C -0.25 -13.50 9.58 84.03 0.81 -12.70 16 14 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 15 C -0.06 -3.11 4.91 84.86 0.42 -2.69 16 16 N -0.94 -56.17 11.19 21.65 0.24 -55.93 16 17 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 21 C 0.11 4.25 6.16 86.36 0.53 4.78 16 22 C 0.10 3.00 3.38 30.67 0.10 3.11 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 O -0.56 -17.02 12.09 -148.98 -1.80 -18.83 16 25 N -0.38 -7.90 9.62 -183.46 -1.77 -9.67 16 26 C 0.04 0.68 11.23 85.75 0.96 1.64 16 27 C 0.47 8.87 7.45 85.09 0.63 9.50 16 28 O -0.55 -13.28 16.74 -4.85 -0.08 -13.36 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.81 7.46 -2.39 -0.02 0.79 16 31 H 0.13 0.10 8.04 -2.39 -0.02 0.08 16 32 H 0.21 2.22 7.58 -2.91 -0.02 2.20 16 33 H 0.42 11.14 7.57 -92.70 -0.70 10.44 16 34 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.05 2.41 7.61 -2.39 -0.02 2.40 16 36 H 0.05 3.04 6.04 -2.38 -0.01 3.03 16 37 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 38 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 2.64 7.93 -2.39 -0.02 2.62 16 41 H 0.39 8.84 9.08 -74.05 -0.67 8.17 16 42 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -75.96 351.79 -0.75 -76.71 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.30 Total: 20.70 kcal Atomic # 6 Polarization: 27.68 SS G_CDS: 7.29 Total: 34.97 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -7.82 Total: -127.89 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -1.95 Total: -51.58 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.96 -0.75 -76.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090440352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.902 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds