Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34866 * 120.31025 * 2 1 4 4 C 1.38053 * 119.94809 * 179.72658 * 3 2 1 5 5 C 1.47577 * 119.72608 * 180.02562 * 4 3 2 6 6 O 1.21599 * 120.00199 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00124 * 180.02562 * 5 4 3 8 8 C 1.46504 * 120.00485 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.45637 * 35.02633 * 8 7 5 10 10 C 1.53032 * 109.45956 * 275.07050 * 8 7 5 11 11 C 1.53199 * 109.31233 * 178.60962 * 10 8 7 12 12 N 1.46928 * 108.77266 * 54.63369 * 11 10 8 13 13 C 1.36937 * 120.62967 * 126.41233 * 12 11 10 14 14 H 1.08000 * 120.00200 * 332.61201 * 13 12 11 15 15 C 1.38816 * 119.99895 * 152.60152 * 13 12 11 16 16 N 1.31619 * 119.99775 * 159.34039 * 15 13 12 17 17 Si 1.86797 * 119.99964 * 339.35117 * 15 13 12 18 18 H 1.48500 * 109.47560 * 92.94321 * 17 15 13 19 19 H 1.48502 * 109.46961 * 212.93984 * 17 15 13 20 20 H 1.48498 * 109.47063 * 332.93573 * 17 15 13 21 21 C 1.46922 * 118.73806 * 306.39036 * 12 11 10 22 22 C 1.53032 * 109.46233 * 154.99687 * 8 7 5 23 23 H 1.09001 * 109.49760 * 61.40575 * 22 8 7 24 24 O 1.42898 * 109.49931 * 301.33800 * 22 8 7 25 25 N 1.34145 * 120.54593 * 359.97241 * 4 3 2 26 26 C 1.30600 * 120.62992 * 0.02944 * 25 4 3 27 27 C 1.34956 * 120.30587 * 179.72023 * 2 1 3 28 28 O 1.21862 * 120.27132 * 0.25583 * 27 2 1 29 29 H 1.09001 * 109.47205 * 90.00018 * 1 2 3 30 30 H 1.08997 * 109.47207 * 210.00612 * 1 2 3 31 31 H 1.08999 * 109.46507 * 330.00281 * 1 2 3 32 32 H 1.07999 * 120.02689 * 359.70081 * 3 2 1 33 33 H 0.97006 * 120.00118 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.50059 * 298.55904 * 10 8 7 35 35 H 1.09002 * 109.50551 * 58.66009 * 10 8 7 36 36 H 1.08991 * 109.58669 * 294.84528 * 11 10 8 37 37 H 1.09001 * 109.58742 * 174.41624 * 11 10 8 38 38 H 0.96994 * 119.99850 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.58774 * 293.82220 * 21 12 11 40 40 H 1.09001 * 109.70456 * 173.46552 * 21 12 11 41 41 H 0.96702 * 114.00331 * 179.97438 * 24 22 8 42 42 H 1.08009 * 119.98697 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1457 1.1643 0.0000 4 6 3.5262 1.1556 0.0057 5 6 4.2660 2.4325 0.0063 6 8 3.6597 3.4865 0.0012 7 7 5.6138 2.4305 0.0113 8 6 6.3483 3.6981 0.0113 9 1 5.7999 4.4355 0.5975 10 6 6.4990 4.2000 -1.4265 11 6 7.2369 5.5425 -1.4198 12 7 8.5080 5.3798 -0.7011 13 6 9.6916 5.7440 -1.2857 14 1 9.7898 5.7293 -2.3611 15 6 10.7651 6.1324 -0.4959 16 7 11.9880 6.0902 -0.9808 17 14 10.4741 6.7146 1.2550 18 1 10.6048 5.5658 2.1869 19 1 11.4773 7.7522 1.6047 20 1 9.1091 7.2889 1.3653 21 6 8.4850 4.8193 0.6568 22 6 7.7331 3.4849 0.6268 23 1 8.2910 2.7658 0.0270 24 8 7.5916 2.9872 1.9588 25 7 4.2006 -0.0040 0.0118 26 6 3.5638 -1.1442 0.0119 27 6 2.1461 -1.1651 0.0057 28 8 1.5474 -2.2266 0.0062 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5138 32 1 1.6112 2.1028 -0.0049 33 1 6.0975 1.5897 0.0149 34 1 7.0687 3.4746 -2.0073 35 1 5.5126 4.3293 -1.8721 36 1 6.6264 6.2925 -0.9172 37 1 7.4343 5.8561 -2.4449 38 1 12.7381 6.3612 -0.4289 39 1 7.9762 5.5104 1.3288 40 1 9.5052 4.6560 1.0043 41 1 8.4316 2.8283 2.4107 42 1 4.1172 -2.0717 0.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090440355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = -67.212720 kcal Electronic energy + Delta-G solvation = -27376.731162 eV Core-core repulsion = 23357.474574 eV Total energy + Delta-G solvation = -4019.256588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.00313 -41.09157 -39.66284 -38.53190 -37.08741 -37.00303 -35.83060 -34.05533 -32.19130 -31.39561 -30.63788 -29.41722 -27.14549 -25.79648 -25.26618 -24.53087 -23.36184 -21.90822 -21.33277 -19.83227 -19.48168 -18.74648 -18.27575 -18.04541 -17.62537 -17.58140 -16.83139 -16.63921 -16.12292 -15.98886 -15.64331 -15.50752 -15.18108 -15.04318 -14.69565 -14.57447 -14.53959 -14.18241 -14.01122 -13.81433 -13.50858 -13.45302 -13.05603 -12.71907 -12.68021 -12.47048 -12.34066 -12.07038 -11.98449 -11.71521 -11.45604 -11.26521 -11.08266 -10.69826 -10.55491 -10.10416 -9.37050 -9.00096 -8.17280 -5.50901 -0.59985 0.04085 1.13462 1.27793 1.43384 1.51316 1.71318 2.09014 2.39734 2.58485 2.89338 2.98768 3.04793 3.16446 3.35860 3.53424 3.78937 3.82235 4.03108 4.07557 4.08855 4.20027 4.27559 4.31415 4.37459 4.57825 4.67123 4.70934 4.72281 4.80734 4.90454 4.92105 4.95055 5.04460 5.33124 5.35357 5.45213 5.83893 6.12423 6.26625 6.44425 6.63639 6.73439 6.89413 7.16198 7.57909 7.97603 9.02084 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030301 B = 0.002770 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.849755 B =10106.966301 C =10312.485340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.475 5.475 3 C 0.198 3.802 4 C -0.096 4.096 5 C 0.589 3.411 6 O -0.573 6.573 7 N -0.691 5.691 8 C 0.168 3.832 9 H 0.076 0.924 10 C -0.127 4.127 11 C 0.144 3.856 12 N -0.614 5.614 13 C -0.250 4.250 14 H 0.059 0.941 15 C -0.031 4.031 16 N -0.952 5.952 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.312 1.312 20 H -0.267 1.267 21 C 0.098 3.902 22 C 0.096 3.904 23 H 0.067 0.933 24 O -0.569 6.569 25 N -0.382 5.382 26 C 0.037 3.963 27 C 0.470 3.530 28 O -0.552 6.552 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.214 0.786 33 H 0.415 0.585 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.263 0.737 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.393 0.607 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.960 -13.137 3.871 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.183 5.183 3 C 0.061 3.939 4 C -0.220 4.220 5 C 0.375 3.625 6 O -0.453 6.453 7 N -0.340 5.340 8 C 0.063 3.937 9 H 0.094 0.906 10 C -0.167 4.167 11 C 0.019 3.981 12 N -0.340 5.340 13 C -0.379 4.379 14 H 0.077 0.923 15 C -0.226 4.226 16 N -0.598 5.598 17 Si 0.770 3.230 18 H -0.194 1.194 19 H -0.241 1.241 20 H -0.192 1.192 21 C -0.028 4.028 22 C 0.034 3.966 23 H 0.085 0.915 24 O -0.376 6.376 25 N -0.098 5.098 26 C -0.152 4.152 27 C 0.268 3.732 28 O -0.430 6.430 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.231 0.769 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.243 0.757 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.499 -12.803 3.748 27.021 hybrid contribution 0.622 0.127 0.776 1.003 sum -22.877 -12.676 4.524 26.543 Atomic orbital electron populations 1.22741 0.73221 1.07195 1.06306 1.45749 1.11805 1.06215 1.54579 1.23481 0.92852 0.91900 0.85673 1.20175 0.90535 0.92386 1.18890 1.17459 0.82288 0.87011 0.75696 1.90786 1.68858 1.32469 1.53214 1.45654 1.05702 1.09866 1.72748 1.20756 0.90392 0.86034 0.96494 0.90625 1.22255 1.01026 0.98281 0.95169 1.21108 0.85299 0.94798 0.96878 1.44422 1.03201 1.72190 1.14176 1.18876 0.88403 1.38384 0.92248 0.92310 1.25872 0.94948 0.99982 1.01777 1.69951 0.98760 1.51852 1.39242 0.86013 0.77034 0.78177 0.81800 1.19365 1.24097 1.19178 1.22044 0.99334 0.94125 0.87272 1.22414 0.95170 0.95054 0.83915 0.91544 1.86430 1.36724 1.87120 1.27340 1.67622 1.40970 0.98039 1.03128 1.25012 0.89240 0.97859 1.03104 1.18981 0.91175 0.83502 0.79519 1.90944 1.71212 1.29123 1.51700 0.88087 0.88735 0.85497 0.76922 0.74854 0.91373 0.89935 0.94674 0.91310 0.92833 0.94749 0.91780 0.75700 0.77108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.43 127.77 1.33 1.57 16 2 N -0.47 -6.03 2.97 -671.22 -2.00 -8.03 16 3 C 0.20 2.68 9.90 84.18 0.83 3.51 16 4 C -0.10 -1.93 6.71 41.21 0.28 -1.65 16 5 C 0.59 15.30 7.75 86.71 0.67 15.97 16 6 O -0.57 -17.31 15.94 -4.03 -0.06 -17.38 16 7 N -0.69 -18.50 4.91 -445.53 -2.19 -20.69 16 8 C 0.17 5.25 2.12 45.01 0.10 5.34 16 9 H 0.08 2.64 7.58 -2.38 -0.02 2.62 16 10 C -0.13 -3.99 5.65 30.67 0.17 -3.82 16 11 C 0.14 5.41 6.52 86.36 0.56 5.97 16 12 N -0.61 -27.71 2.77 -699.09 -1.94 -29.65 16 13 C -0.25 -13.63 10.04 84.03 0.84 -12.78 16 14 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 15 C -0.03 -1.73 5.23 84.86 0.44 -1.28 16 16 N -0.95 -58.10 13.97 21.65 0.30 -57.79 16 17 Si 0.94 44.99 24.35 68.60 1.67 46.66 16 18 H -0.27 -11.70 6.62 99.48 0.66 -11.04 16 19 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 20 H -0.27 -12.52 6.63 99.48 0.66 -11.86 16 21 C 0.10 3.97 3.83 86.36 0.33 4.30 16 22 C 0.10 3.12 3.14 30.67 0.10 3.22 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 O -0.57 -16.45 13.16 -148.98 -1.96 -18.41 16 25 N -0.38 -7.52 9.62 -183.47 -1.77 -9.28 16 26 C 0.04 0.63 11.23 85.75 0.96 1.59 16 27 C 0.47 8.50 7.45 85.09 0.63 9.13 16 28 O -0.55 -12.99 16.74 -4.87 -0.08 -13.07 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.71 7.45 -2.39 -0.02 0.69 16 31 H 0.13 -0.09 8.04 -2.39 -0.02 -0.11 16 32 H 0.21 1.80 7.58 -2.91 -0.02 1.77 16 33 H 0.41 10.23 7.92 -92.70 -0.73 9.50 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.03 1.41 7.07 -2.39 -0.02 1.40 16 40 H 0.06 2.77 4.50 -2.39 -0.01 2.76 16 41 H 0.39 8.62 9.08 -74.06 -0.67 7.95 16 42 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -75.14 347.08 -1.18 -76.32 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.42 Total: 20.24 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 7.26 Total: 31.08 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -7.58 Total: -125.44 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.11 Total: -48.86 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -75.14 -1.18 -76.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090440355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.110 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds