Wall clock time and date at job start Fri Apr 10 2020 18:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34874 * 120.31007 * 2 1 4 4 C 1.38044 * 119.94952 * 179.72162 * 3 2 1 5 5 C 1.47577 * 119.72707 * 179.97438 * 4 3 2 6 6 O 1.21597 * 119.99906 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00322 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00543 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.45399 * 324.97164 * 8 7 5 10 10 C 1.53040 * 109.45964 * 84.92844 * 8 7 5 11 11 C 1.53192 * 109.31132 * 181.38929 * 10 8 7 12 12 N 1.46930 * 108.77479 * 305.36500 * 11 10 8 13 13 C 1.36936 * 120.63040 * 233.58872 * 12 11 10 14 14 H 1.08000 * 119.99736 * 27.69576 * 13 12 11 15 15 C 1.38813 * 120.00028 * 207.69570 * 13 12 11 16 16 N 1.31624 * 119.99543 * 17.35915 * 15 13 12 17 17 Si 1.86791 * 120.00054 * 197.35458 * 15 13 12 18 18 H 1.48500 * 109.47413 * 90.00091 * 17 15 13 19 19 H 1.48501 * 109.47293 * 210.00198 * 17 15 13 20 20 H 1.48501 * 109.47489 * 330.00064 * 17 15 13 21 21 C 1.46928 * 118.73575 * 53.60985 * 12 11 10 22 22 C 1.53033 * 109.46013 * 204.99850 * 8 7 5 23 23 H 1.08996 * 109.50015 * 298.56135 * 22 8 7 24 24 O 1.42900 * 109.50203 * 58.66361 * 22 8 7 25 25 N 1.34149 * 120.54482 * 0.02562 * 4 3 2 26 26 C 1.30605 * 120.62895 * 359.97402 * 25 4 3 27 27 C 1.34958 * 120.30379 * 179.71620 * 2 1 3 28 28 O 1.21863 * 120.27262 * 0.25506 * 27 2 1 29 29 H 1.09001 * 109.46924 * 90.00099 * 1 2 3 30 30 H 1.08998 * 109.47479 * 209.99934 * 1 2 3 31 31 H 1.08994 * 109.47296 * 330.00665 * 1 2 3 32 32 H 1.08001 * 120.01996 * 359.74163 * 3 2 1 33 33 H 0.97009 * 119.99865 * 359.97438 * 7 5 4 34 34 H 1.09004 * 109.49471 * 301.33977 * 10 8 7 35 35 H 1.09001 * 109.49941 * 61.43717 * 10 8 7 36 36 H 1.08998 * 109.58734 * 185.57806 * 11 10 8 37 37 H 1.09001 * 109.58647 * 65.15443 * 11 10 8 38 38 H 0.97001 * 119.99455 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.58070 * 186.60630 * 21 12 11 40 40 H 1.08989 * 109.70481 * 66.25224 * 21 12 11 41 41 H 0.96697 * 114.00550 * 180.02562 * 24 22 8 42 42 H 1.08004 * 119.98193 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1644 0.0000 4 6 3.5261 1.1557 0.0058 5 6 4.2659 2.4326 0.0052 6 8 3.6596 3.4866 -0.0009 7 7 5.6137 2.4306 0.0103 8 6 6.3482 3.6982 0.0092 9 1 5.8042 4.4324 -0.5851 10 6 6.4879 4.2078 1.4455 11 6 7.2259 5.5502 1.4372 12 7 8.5024 5.3838 0.7290 13 6 9.6815 5.7512 1.3205 14 1 9.7731 5.7374 2.3965 15 6 10.7590 6.1413 0.5371 16 7 10.5685 6.4883 -0.7182 17 14 12.4792 6.1741 1.2645 18 1 13.1281 4.8539 1.0608 19 1 13.2807 7.2284 0.5928 20 1 12.3966 6.4659 2.7182 21 6 8.4897 4.8160 -0.6261 22 6 7.7376 3.4818 -0.5946 23 1 8.2912 2.7664 0.0135 24 8 7.6062 2.9770 -1.9250 25 7 4.2006 -0.0039 0.0110 26 6 3.5637 -1.1441 0.0111 27 6 2.1460 -1.1652 0.0058 28 8 1.5473 -2.2266 0.0063 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6111 2.1028 -0.0042 33 1 6.0974 1.5898 0.0148 34 1 5.4981 4.3394 1.8827 35 1 7.0533 3.4855 2.0344 36 1 7.4155 5.8693 2.4620 37 1 6.6191 6.2976 0.9259 38 1 11.3214 6.7613 -1.2655 39 1 9.5133 4.6506 -0.9626 40 1 7.9876 5.5026 -1.3075 41 1 8.4496 2.8156 -2.3696 42 1 4.1172 -2.0715 0.0157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090440357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:12 Heat of formation + Delta-G solvation = -71.219757 kcal Electronic energy + Delta-G solvation = -27271.917251 eV Core-core repulsion = 23252.486904 eV Total energy + Delta-G solvation = -4019.430346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.99739 -41.02404 -39.50661 -38.50628 -37.07676 -36.86055 -35.78283 -33.91454 -31.93991 -31.01275 -30.46550 -29.39955 -27.18348 -25.82485 -25.27074 -24.06854 -23.44314 -21.81943 -21.19706 -19.80395 -19.43336 -18.67728 -18.08342 -18.03228 -17.60120 -17.28212 -16.80971 -16.63900 -15.99245 -15.73695 -15.62028 -15.52619 -15.14021 -15.01328 -14.59236 -14.54007 -14.40198 -13.87445 -13.72576 -13.48729 -13.39269 -13.32880 -13.03072 -12.71319 -12.65287 -12.51374 -12.07316 -12.06057 -11.98409 -11.85805 -11.47897 -11.18172 -10.91827 -10.58292 -10.56158 -10.07122 -9.36489 -8.74655 -7.89101 -5.35780 -0.59560 0.04653 1.13995 1.49977 1.51431 1.60175 1.72247 2.11891 2.51159 2.59121 2.97946 3.05430 3.14627 3.29326 3.54503 3.66288 3.81165 3.93962 4.07933 4.10154 4.22054 4.31766 4.34015 4.45036 4.48500 4.66966 4.69194 4.76054 4.89235 4.93568 4.97181 5.07943 5.18965 5.34607 5.36871 5.48288 5.59342 5.65880 6.27354 6.35296 6.45339 6.65368 6.84431 7.11991 7.18188 7.79886 8.32417 9.17547 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.002615 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.948824 B =10702.962404 C =10955.165641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.475 5.475 3 C 0.197 3.803 4 C -0.095 4.095 5 C 0.587 3.413 6 O -0.576 6.576 7 N -0.690 5.690 8 C 0.170 3.830 9 H 0.064 0.936 10 C -0.123 4.123 11 C 0.142 3.858 12 N -0.605 5.605 13 C -0.264 4.264 14 H 0.073 0.927 15 C -0.048 4.048 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.269 1.269 21 C 0.158 3.842 22 C 0.091 3.909 23 H 0.062 0.938 24 O -0.573 6.573 25 N -0.382 5.382 26 C 0.038 3.962 27 C 0.471 3.529 28 O -0.551 6.551 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.213 0.787 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.013 0.987 38 H 0.251 0.749 39 H 0.070 0.930 40 H -0.002 1.002 41 H 0.391 0.609 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -14.278 1.579 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.183 5.183 3 C 0.061 3.939 4 C -0.219 4.219 5 C 0.373 3.627 6 O -0.456 6.456 7 N -0.338 5.338 8 C 0.065 3.935 9 H 0.082 0.918 10 C -0.163 4.163 11 C 0.016 3.984 12 N -0.330 5.330 13 C -0.394 4.394 14 H 0.090 0.910 15 C -0.244 4.244 16 N -0.580 5.580 17 Si 0.797 3.203 18 H -0.209 1.209 19 H -0.225 1.225 20 H -0.194 1.194 21 C 0.031 3.969 22 C 0.030 3.970 23 H 0.080 0.920 24 O -0.380 6.380 25 N -0.098 5.098 26 C -0.151 4.151 27 C 0.269 3.731 28 O -0.429 6.429 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.230 0.770 33 H 0.251 0.749 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.241 0.759 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -18.397 -13.907 1.612 23.119 hybrid contribution 1.096 0.029 -0.196 1.114 sum -17.301 -13.879 1.416 22.225 Atomic orbital electron populations 1.22740 0.73209 1.07236 1.06269 1.45745 1.11803 1.06174 1.54620 1.23460 0.92828 0.91911 0.85744 1.20151 0.90536 0.92326 1.18862 1.17513 0.82353 0.87062 0.75745 1.90784 1.68895 1.32620 1.53338 1.45684 1.05683 1.09876 1.72596 1.20732 0.90573 0.85614 0.96555 0.91799 1.22228 1.00729 0.98379 0.95013 1.21051 0.86423 0.94220 0.96690 1.44266 1.02243 1.71679 1.14804 1.19553 0.89619 1.38303 0.91909 0.90962 1.25816 1.02630 0.98935 0.97010 1.70187 1.30670 1.48362 1.08804 0.85246 0.79936 0.77014 0.78111 1.20896 1.22459 1.19359 1.21210 0.99159 0.90510 0.86064 1.22564 0.94889 0.96084 0.83446 0.91993 1.86396 1.36505 1.86922 1.28175 1.67627 1.40965 0.98022 1.03161 1.25032 0.89256 0.97840 1.03009 1.18977 0.91170 0.83487 0.79507 1.90941 1.71206 1.29076 1.51704 0.88180 0.88626 0.85495 0.77018 0.74891 0.90498 0.91038 0.91447 0.96866 0.93952 0.91210 0.98404 0.75937 0.76999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.43 127.77 1.33 1.61 16 2 N -0.47 -6.51 2.97 -671.23 -2.00 -8.51 16 3 C 0.20 2.96 9.90 84.18 0.83 3.79 16 4 C -0.09 -2.07 6.71 41.21 0.28 -1.79 16 5 C 0.59 16.72 7.75 86.71 0.67 17.39 16 6 O -0.58 -19.13 15.94 -4.02 -0.06 -19.19 16 7 N -0.69 -20.37 4.91 -445.54 -2.19 -22.56 16 8 C 0.17 5.97 2.12 45.02 0.10 6.07 16 9 H 0.06 2.60 7.58 -2.39 -0.02 2.58 16 10 C -0.12 -4.23 5.65 30.67 0.17 -4.05 16 11 C 0.14 5.85 6.52 86.36 0.56 6.41 16 12 N -0.61 -29.54 2.99 -699.09 -2.09 -31.63 16 13 C -0.26 -13.98 9.59 84.03 0.81 -13.18 16 14 H 0.07 3.71 7.89 -2.91 -0.02 3.68 16 15 C -0.05 -2.61 4.91 84.86 0.42 -2.19 16 16 N -0.93 -53.67 11.19 21.65 0.24 -53.42 16 17 Si 0.97 43.32 29.59 68.60 2.03 45.35 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.16 7.36 4.94 86.36 0.43 7.79 16 22 C 0.09 3.35 3.14 30.67 0.10 3.45 16 23 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 24 O -0.57 -19.24 13.16 -148.98 -1.96 -21.20 16 25 N -0.38 -8.00 9.62 -183.47 -1.77 -9.77 16 26 C 0.04 0.67 11.23 85.75 0.96 1.64 16 27 C 0.47 8.88 7.45 85.09 0.63 9.51 16 28 O -0.55 -13.29 16.74 -4.87 -0.08 -13.37 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.78 7.45 -2.39 -0.02 0.76 16 31 H 0.13 0.02 8.04 -2.39 -0.02 0.00 16 32 H 0.21 2.14 7.58 -2.91 -0.02 2.12 16 33 H 0.41 11.17 7.92 -92.70 -0.73 10.44 16 34 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.07 3.59 6.04 -2.38 -0.01 3.57 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.39 10.46 9.08 -74.06 -0.67 9.79 16 42 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -72.98 353.49 -0.92 -73.90 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.33 Total: 23.95 kcal Atomic # 6 Polarization: 29.17 SS G_CDS: 7.29 Total: 36.46 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -7.80 Total: -125.89 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -2.11 Total: -53.77 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.98 -0.92 -73.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090440357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.682 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds