Wall clock time and date at job start Fri Apr 10 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28389 * 119.09605 * 2 1 4 4 C 1.31406 * 122.26385 * 180.27305 * 3 2 1 5 5 C 1.47885 * 119.89624 * 179.74093 * 4 3 2 6 6 O 1.21546 * 120.00291 * 179.72479 * 5 4 3 7 7 N 1.34781 * 119.99636 * 359.73170 * 5 4 3 8 8 C 1.46497 * 119.99742 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46181 * 35.03076 * 8 7 5 10 10 C 1.53037 * 109.46469 * 275.07012 * 8 7 5 11 11 C 1.53188 * 109.31716 * 178.61620 * 10 8 7 12 12 N 1.46927 * 108.77468 * 54.63271 * 11 10 8 13 13 C 1.36938 * 120.63572 * 126.41798 * 12 11 10 14 14 H 1.07994 * 120.00539 * 207.67062 * 13 12 11 15 15 C 1.38815 * 119.99465 * 27.66200 * 13 12 11 16 16 N 1.31621 * 119.99894 * 17.37699 * 15 13 12 17 17 Si 1.86803 * 119.99808 * 197.36724 * 15 13 12 18 18 H 1.48500 * 109.47371 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46464 * 120.00704 * 17 15 13 20 20 H 1.48494 * 109.47446 * 240.00469 * 17 15 13 21 21 C 1.46932 * 118.73982 * 306.39057 * 12 11 10 22 22 C 1.53044 * 109.45988 * 154.99668 * 8 7 5 23 23 H 1.09004 * 109.49237 * 61.40443 * 22 8 7 24 24 O 1.42898 * 109.49936 * 301.34378 * 22 8 7 25 25 C 1.41581 * 120.21136 * 359.47142 * 4 3 2 26 26 C 1.36327 * 118.23626 * 0.24980 * 25 4 3 27 27 C 1.34602 * 119.10269 * 179.74007 * 2 1 3 28 28 O 1.21985 * 120.22701 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47366 * 270.25650 * 1 2 3 30 30 H 1.08997 * 109.47298 * 30.26262 * 1 2 3 31 31 H 1.09002 * 109.46893 * 150.25724 * 1 2 3 32 32 H 0.96993 * 119.99988 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.49165 * 298.56962 * 10 8 7 34 34 H 1.09001 * 109.49918 * 58.65698 * 10 8 7 35 35 H 1.09000 * 109.58938 * 174.41555 * 11 10 8 36 36 H 1.08998 * 109.58595 * 294.85142 * 11 10 8 37 37 H 0.97008 * 119.99689 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.58985 * 293.82292 * 21 12 11 39 39 H 1.08997 * 109.58717 * 173.39866 * 21 12 11 40 40 H 0.96699 * 114.00010 * 180.02562 * 24 22 8 41 41 H 1.07997 * 120.87950 * 180.27131 * 25 4 3 42 42 H 1.08006 * 121.02946 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0893 1.1219 0.0000 4 6 3.4014 1.1945 -0.0053 5 6 4.0665 2.5153 -0.0108 6 8 5.2800 2.5848 -0.0106 7 7 3.3270 3.6421 -0.0158 8 6 3.9858 4.9506 -0.0207 9 1 4.9012 4.8941 -0.6098 10 6 4.3281 5.3545 1.4151 11 6 5.0477 6.7069 1.4032 12 7 4.2134 7.6801 0.6852 13 6 3.8723 8.8713 1.2681 14 1 2.9565 9.3685 0.9848 15 6 4.7038 9.4396 2.2235 16 7 5.9537 9.0410 2.3289 17 14 4.0486 10.7702 3.3592 18 1 2.6231 11.0362 3.0395 19 1 4.1633 10.3180 4.7691 20 1 4.8386 12.0136 3.1724 21 6 3.7525 7.3512 -0.6707 22 6 3.0475 5.9916 -0.6355 23 1 2.1422 6.0662 -0.0329 24 8 2.7040 5.5978 -1.9655 25 6 4.1804 0.0123 0.0000 26 6 3.5323 -1.1871 0.0054 27 6 2.1197 -1.1761 0.0053 28 8 1.4974 -2.2253 0.0096 29 1 -0.3634 0.0046 1.0276 30 1 -0.3634 0.8876 -0.5179 31 1 -0.3633 -0.8923 -0.5098 32 1 2.3586 3.5867 -0.0162 33 1 3.4110 5.4355 1.9987 34 1 4.9776 4.6007 1.8601 35 1 5.2054 7.0459 2.4271 36 1 6.0079 6.6054 0.8976 37 1 6.5349 9.4385 2.9963 38 1 4.6071 7.3023 -1.3454 39 1 3.0557 8.1154 -1.0152 40 1 2.1103 6.2133 -2.4170 41 1 5.2593 0.0594 0.0001 42 1 4.0819 -2.1169 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090782339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:25 Heat of formation + Delta-G solvation = -22.825785 kcal Electronic energy + Delta-G solvation = -27379.267524 eV Core-core repulsion = 23361.935697 eV Total energy + Delta-G solvation = -4017.331826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.42033 -39.89548 -38.28507 -37.78854 -35.45712 -35.22108 -34.46833 -32.33304 -31.60148 -30.04680 -28.87555 -28.39459 -25.85891 -24.96521 -23.94940 -22.56180 -22.08918 -20.93566 -19.74722 -18.74971 -18.31036 -17.19305 -17.13290 -16.94479 -16.57905 -16.20890 -15.87209 -14.99958 -14.80262 -14.62689 -14.12741 -13.94258 -13.79580 -13.76313 -13.52849 -13.27154 -13.06958 -12.96238 -12.74279 -12.33149 -12.10990 -11.93664 -11.61760 -11.15446 -10.92518 -10.79719 -10.75965 -10.38658 -10.32304 -10.29655 -10.07619 -9.96567 -9.77937 -9.53347 -9.00395 -8.80078 -8.50256 -6.81623 -5.88654 -3.32628 0.09915 0.85412 1.75500 2.62716 3.02923 3.31762 3.33415 3.39834 3.41552 3.62427 4.29789 4.33267 4.43749 4.46788 4.62919 4.81330 4.83149 5.15334 5.20105 5.23765 5.28379 5.31826 5.43026 5.49472 5.53800 5.67374 5.72101 5.91379 6.04312 6.21802 6.43023 6.45232 6.60975 6.72403 6.74723 7.14108 7.24321 7.47602 7.56856 7.67871 7.69999 7.87373 8.18715 8.33795 9.09414 9.71792 10.27197 11.19927 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.002774 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.642722 B =10091.177637 C =10233.007807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.338 5.338 3 N -0.183 5.183 4 C 0.027 3.973 5 C 0.584 3.416 6 O -0.526 6.526 7 N -0.694 5.694 8 C 0.161 3.839 9 H 0.092 0.908 10 C -0.148 4.148 11 C 0.171 3.829 12 N -0.588 5.588 13 C -0.259 4.259 14 H 0.068 0.932 15 C 0.005 3.995 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.121 3.879 22 C 0.080 3.920 23 H 0.057 0.943 24 O -0.571 6.571 25 C -0.029 4.029 26 C -0.194 4.194 27 C 0.479 3.521 28 O -0.530 6.530 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.405 0.595 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.025 0.975 37 H 0.255 0.745 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.374 0.626 41 H 0.166 0.834 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 -15.803 -5.236 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.160 5.160 3 N -0.013 5.013 4 C -0.145 4.145 5 C 0.366 3.634 6 O -0.401 6.401 7 N -0.343 5.343 8 C 0.058 3.942 9 H 0.110 0.890 10 C -0.188 4.188 11 C 0.045 3.955 12 N -0.312 5.312 13 C -0.389 4.389 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.542 5.542 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.007 4.007 22 C 0.019 3.981 23 H 0.075 0.925 24 O -0.375 6.375 25 C -0.052 4.052 26 C -0.224 4.224 27 C 0.278 3.722 28 O -0.408 6.408 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.239 0.761 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.221 0.779 41 H 0.183 0.817 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.969 -16.274 -4.977 19.237 hybrid contribution -0.506 0.565 0.518 0.918 sum -9.475 -15.709 -4.459 18.880 Atomic orbital electron populations 1.22263 0.73457 1.05763 1.04842 1.46718 1.09936 1.02642 1.56724 1.71093 1.11352 1.12470 1.06393 1.21955 0.88036 0.96653 1.07876 1.17175 0.86477 0.82167 0.77572 1.90841 1.12542 1.86174 1.50496 1.45970 1.10569 1.05505 1.72254 1.21136 0.96059 0.79171 0.97882 0.89010 1.22630 1.01551 1.00843 0.93763 1.20842 0.90920 0.84032 0.99728 1.44064 1.59874 1.16926 1.10366 1.19194 1.02283 0.98089 1.19309 0.91467 1.25070 0.94623 0.98232 1.01479 1.70045 1.03980 1.44686 1.35477 0.86215 0.78384 0.81274 0.80812 1.20227 1.21452 1.21638 1.21530 0.97180 0.92721 0.89249 1.22776 0.97163 0.95718 0.82434 0.92459 1.86478 1.70367 1.52153 1.28540 1.22294 1.03301 0.90270 0.89362 1.22684 0.92603 1.00487 1.06581 1.18113 0.90184 0.83919 0.79948 1.90972 1.69300 1.29413 1.51118 0.89690 0.88243 0.87980 0.76054 0.92183 0.91742 0.88772 0.95684 0.93456 0.95217 0.92088 0.77901 0.81691 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.58 59.85 0.63 1.15 16 2 N -0.34 -3.44 3.62 -70.16 -0.25 -3.70 16 3 N -0.18 -1.98 10.11 33.42 0.34 -1.64 16 4 C 0.03 0.32 6.84 -82.83 -0.57 -0.25 16 5 C 0.58 8.47 7.77 -12.31 -0.10 8.38 16 6 O -0.53 -9.15 16.05 5.33 0.09 -9.07 16 7 N -0.69 -9.86 4.91 -54.70 -0.27 -10.13 16 8 C 0.16 2.72 2.12 -67.89 -0.14 2.57 16 9 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 10 C -0.15 -2.74 5.65 -26.61 -0.15 -2.89 16 11 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 12 N -0.59 -13.86 3.00 -172.32 -0.52 -14.38 16 13 C -0.26 -6.73 9.59 -15.06 -0.14 -6.88 16 14 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 15 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 16 N -0.90 -25.21 11.19 55.49 0.62 -24.59 16 17 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.12 2.34 6.14 -3.71 -0.02 2.32 16 22 C 0.08 1.28 3.14 -26.61 -0.08 1.20 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 O -0.57 -7.99 13.16 -35.23 -0.46 -8.46 16 25 C -0.03 -0.29 9.68 -39.00 -0.38 -0.66 16 26 C -0.19 -1.85 10.11 -39.12 -0.40 -2.24 16 27 C 0.48 5.51 7.47 -15.19 -0.11 5.40 16 28 O -0.53 -7.36 16.62 4.93 0.08 -7.28 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.67 7.36 -51.93 -0.38 0.29 16 32 H 0.40 5.01 7.94 -40.82 -0.32 4.68 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 40 H 0.37 3.69 9.08 45.56 0.41 4.10 16 41 H 0.17 1.42 7.72 -52.49 -0.41 1.01 16 42 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -32.83 353.73 -6.39 -39.22 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.75 Total: 6.85 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -1.57 Total: 12.04 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.08 Total: -54.43 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.30 Total: -24.80 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.83 -6.39 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090782339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.395 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds