Wall clock time and date at job start Fri Apr 10 2020 18:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28389 * 119.09605 * 2 1 4 4 C 1.31406 * 122.26385 * 180.27305 * 3 2 1 5 5 C 1.47885 * 119.89624 * 179.74093 * 4 3 2 6 6 O 1.21546 * 120.00291 * 179.72479 * 5 4 3 7 7 N 1.34781 * 119.99636 * 359.73170 * 5 4 3 8 8 C 1.46497 * 119.99742 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46181 * 35.03076 * 8 7 5 10 10 C 1.53037 * 109.46469 * 275.07012 * 8 7 5 11 11 C 1.53188 * 109.31716 * 178.61620 * 10 8 7 12 12 N 1.46927 * 108.77468 * 54.63271 * 11 10 8 13 13 C 1.36938 * 120.63572 * 126.41798 * 12 11 10 14 14 H 1.07994 * 120.00539 * 207.67062 * 13 12 11 15 15 C 1.38815 * 119.99465 * 27.66200 * 13 12 11 16 16 N 1.31621 * 119.99894 * 17.37699 * 15 13 12 17 17 Si 1.86803 * 119.99808 * 197.36724 * 15 13 12 18 18 H 1.48500 * 109.47371 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46464 * 120.00704 * 17 15 13 20 20 H 1.48494 * 109.47446 * 240.00469 * 17 15 13 21 21 C 1.46932 * 118.73982 * 306.39057 * 12 11 10 22 22 C 1.53044 * 109.45988 * 154.99668 * 8 7 5 23 23 H 1.09004 * 109.49237 * 61.40443 * 22 8 7 24 24 O 1.42898 * 109.49936 * 301.34378 * 22 8 7 25 25 C 1.41581 * 120.21136 * 359.47142 * 4 3 2 26 26 C 1.36327 * 118.23626 * 0.24980 * 25 4 3 27 27 C 1.34602 * 119.10269 * 179.74007 * 2 1 3 28 28 O 1.21985 * 120.22701 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47366 * 270.25650 * 1 2 3 30 30 H 1.08997 * 109.47298 * 30.26262 * 1 2 3 31 31 H 1.09002 * 109.46893 * 150.25724 * 1 2 3 32 32 H 0.96993 * 119.99988 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.49165 * 298.56962 * 10 8 7 34 34 H 1.09001 * 109.49918 * 58.65698 * 10 8 7 35 35 H 1.09000 * 109.58938 * 174.41555 * 11 10 8 36 36 H 1.08998 * 109.58595 * 294.85142 * 11 10 8 37 37 H 0.97008 * 119.99689 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.58985 * 293.82292 * 21 12 11 39 39 H 1.08997 * 109.58717 * 173.39866 * 21 12 11 40 40 H 0.96699 * 114.00010 * 180.02562 * 24 22 8 41 41 H 1.07997 * 120.87950 * 180.27131 * 25 4 3 42 42 H 1.08006 * 121.02946 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0893 1.1219 0.0000 4 6 3.4014 1.1945 -0.0053 5 6 4.0665 2.5153 -0.0108 6 8 5.2800 2.5848 -0.0106 7 7 3.3270 3.6421 -0.0158 8 6 3.9858 4.9506 -0.0207 9 1 4.9012 4.8941 -0.6098 10 6 4.3281 5.3545 1.4151 11 6 5.0477 6.7069 1.4032 12 7 4.2134 7.6801 0.6852 13 6 3.8723 8.8713 1.2681 14 1 2.9565 9.3685 0.9848 15 6 4.7038 9.4396 2.2235 16 7 5.9537 9.0410 2.3289 17 14 4.0486 10.7702 3.3592 18 1 2.6231 11.0362 3.0395 19 1 4.1633 10.3180 4.7691 20 1 4.8386 12.0136 3.1724 21 6 3.7525 7.3512 -0.6707 22 6 3.0475 5.9916 -0.6355 23 1 2.1422 6.0662 -0.0329 24 8 2.7040 5.5978 -1.9655 25 6 4.1804 0.0123 0.0000 26 6 3.5323 -1.1871 0.0054 27 6 2.1197 -1.1761 0.0053 28 8 1.4974 -2.2253 0.0096 29 1 -0.3634 0.0046 1.0276 30 1 -0.3634 0.8876 -0.5179 31 1 -0.3633 -0.8923 -0.5098 32 1 2.3586 3.5867 -0.0162 33 1 3.4110 5.4355 1.9987 34 1 4.9776 4.6007 1.8601 35 1 5.2054 7.0459 2.4271 36 1 6.0079 6.6054 0.8976 37 1 6.5349 9.4385 2.9963 38 1 4.6071 7.3023 -1.3454 39 1 3.0557 8.1154 -1.0152 40 1 2.1103 6.2133 -2.4170 41 1 5.2593 0.0594 0.0001 42 1 4.0819 -2.1169 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090782339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:24 Heat of formation + Delta-G solvation = -49.270385 kcal Electronic energy + Delta-G solvation = -27380.414247 eV Core-core repulsion = 23361.935697 eV Total energy + Delta-G solvation = -4018.478550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26948 -41.13066 -39.54722 -38.85811 -36.94368 -36.07612 -35.78052 -33.87467 -32.79242 -31.58312 -30.20633 -29.37885 -27.22734 -26.23143 -24.82214 -24.06455 -23.60557 -22.16649 -21.27083 -19.80760 -19.25591 -18.73915 -17.98234 -17.94992 -17.89012 -17.24412 -17.12163 -16.70268 -16.04930 -15.84472 -15.64567 -15.21763 -14.96158 -14.82955 -14.59617 -14.50572 -14.36933 -13.87838 -13.74368 -13.58866 -13.45768 -13.24880 -12.96025 -12.81119 -12.74191 -12.35829 -12.07353 -12.03007 -11.86407 -11.54417 -11.53850 -11.23259 -11.04280 -10.95733 -10.55879 -10.13822 -9.73746 -8.73984 -7.88299 -5.34884 -0.71379 -0.06264 0.98198 1.49154 1.51787 1.61597 1.63247 1.91492 2.37875 2.51095 2.73514 3.15105 3.28990 3.52131 3.60167 3.65778 3.69451 3.90401 4.09391 4.25089 4.30173 4.34889 4.42863 4.48364 4.53550 4.56340 4.68933 4.70590 4.80087 4.88319 4.90876 4.96299 5.05792 5.16124 5.39162 5.42956 5.63981 5.69921 6.26139 6.36505 6.41302 6.76901 6.91358 7.06008 7.12571 7.81062 8.32901 9.19003 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.002774 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.642722 B =10091.177637 C =10233.007807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.333 5.333 3 N -0.173 5.173 4 C 0.016 3.984 5 C 0.586 3.414 6 O -0.559 6.559 7 N -0.685 5.685 8 C 0.169 3.831 9 H 0.066 0.934 10 C -0.130 4.130 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.263 4.263 14 H 0.076 0.924 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.292 1.292 20 H -0.296 1.296 21 C 0.118 3.882 22 C 0.102 3.898 23 H 0.074 0.926 24 O -0.570 6.570 25 C -0.027 4.027 26 C -0.186 4.186 27 C 0.470 3.530 28 O -0.558 6.558 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.417 0.583 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.063 0.937 36 H -0.005 1.005 37 H 0.250 0.750 38 H 0.014 0.986 39 H 0.075 0.925 40 H 0.396 0.604 41 H 0.177 0.823 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 -16.587 -5.706 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.155 5.155 3 N -0.005 5.005 4 C -0.155 4.155 5 C 0.370 3.630 6 O -0.435 6.435 7 N -0.335 5.335 8 C 0.064 3.936 9 H 0.084 0.916 10 C -0.171 4.171 11 C 0.053 3.947 12 N -0.329 5.329 13 C -0.392 4.392 14 H 0.094 0.906 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.219 1.219 20 H -0.223 1.223 21 C -0.009 4.009 22 C 0.041 3.959 23 H 0.092 0.908 24 O -0.378 6.378 25 C -0.051 4.051 26 C -0.216 4.216 27 C 0.270 3.730 28 O -0.439 6.439 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.254 0.746 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.013 0.987 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.093 0.907 40 H 0.246 0.754 41 H 0.195 0.805 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.458 -17.055 -5.486 21.266 hybrid contribution 0.196 0.796 0.565 0.995 sum -11.262 -16.259 -4.921 20.382 Atomic orbital electron populations 1.22586 0.71467 1.06907 1.06168 1.46984 1.11144 1.02131 1.55240 1.71073 1.10943 1.12620 1.05837 1.21587 0.88664 0.95733 1.09480 1.17450 0.86112 0.82954 0.76511 1.90831 1.14084 1.86792 1.51811 1.45727 1.11069 1.04455 1.72213 1.20773 0.95756 0.80897 0.96175 0.91593 1.22348 1.01259 0.98061 0.95396 1.20565 0.90470 0.86239 0.97457 1.44279 1.59874 1.16584 1.12152 1.19583 1.02230 0.98490 1.18935 0.90592 1.25839 0.94806 1.00721 1.03218 1.70205 1.05253 1.46384 1.36261 0.85203 0.78343 0.78346 0.78494 1.18579 1.21878 1.22294 1.21695 0.97118 0.95288 0.86801 1.22308 0.96821 0.92985 0.83797 0.90846 1.86452 1.71079 1.52748 1.27486 1.22353 1.03800 0.89633 0.89268 1.22886 0.91858 1.01258 1.05581 1.18436 0.90911 0.83866 0.79748 1.90962 1.69950 1.30298 1.52680 0.88289 0.86148 0.87828 0.74593 0.91190 0.91829 0.91905 0.98710 0.94067 0.96770 0.90668 0.75363 0.80545 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.58 127.77 1.35 2.09 16 2 N -0.33 -6.01 3.62 -494.07 -1.79 -7.80 16 3 N -0.17 -3.33 10.11 -48.19 -0.49 -3.82 16 4 C 0.02 0.35 6.84 42.59 0.29 0.64 16 5 C 0.59 16.31 7.77 86.80 0.67 16.98 16 6 O -0.56 -19.30 16.05 -3.86 -0.06 -19.36 16 7 N -0.68 -18.27 4.91 -445.24 -2.18 -20.46 16 8 C 0.17 5.55 2.12 45.02 0.10 5.65 16 9 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 10 C -0.13 -4.83 5.65 30.67 0.17 -4.66 16 11 C 0.18 8.47 5.31 86.36 0.46 8.93 16 12 N -0.60 -28.60 3.00 -699.10 -2.09 -30.69 16 13 C -0.26 -13.56 9.59 84.03 0.81 -12.76 16 14 H 0.08 3.73 7.89 -2.91 -0.02 3.70 16 15 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 16 N -0.94 -54.19 11.19 21.65 0.24 -53.95 16 17 Si 0.97 43.04 29.59 68.60 2.03 45.07 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 21 C 0.12 4.44 6.14 86.36 0.53 4.97 16 22 C 0.10 3.05 3.14 30.67 0.10 3.14 16 23 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 24 O -0.57 -14.26 13.16 -148.98 -1.96 -16.22 16 25 C -0.03 -0.49 9.68 22.65 0.22 -0.27 16 26 C -0.19 -3.17 10.11 22.57 0.23 -2.94 16 27 C 0.47 9.94 7.47 85.01 0.63 10.57 16 28 O -0.56 -14.71 16.62 -5.27 -0.09 -14.80 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 1.15 7.36 -2.39 -0.02 1.13 16 32 H 0.42 9.14 7.94 -92.71 -0.74 8.41 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 3.36 6.04 -2.39 -0.01 3.35 16 36 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 40 H 0.40 6.33 9.08 -74.06 -0.67 5.65 16 41 H 0.18 2.76 7.72 -2.91 -0.02 2.74 16 42 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -72.03 353.73 -0.75 -72.77 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.33 Total: 19.20 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: 5.98 Total: 30.06 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -6.31 Total: -116.72 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.11 Total: -50.38 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.03 -0.75 -72.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090782339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.504 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds