Wall clock time and date at job start Fri Apr 10 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28393 * 119.09462 * 2 1 4 4 C 1.31408 * 122.26199 * 180.02562 * 3 2 1 5 5 C 1.47878 * 119.89125 * 179.97438 * 4 3 2 6 6 O 1.21559 * 119.99978 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00375 * 359.73325 * 5 4 3 8 8 C 1.46503 * 120.00257 * 180.27466 * 7 5 4 9 9 H 1.08997 * 109.45563 * 324.96630 * 8 7 5 10 10 C 1.53037 * 109.46153 * 84.92945 * 8 7 5 11 11 C 1.53189 * 109.31491 * 181.38677 * 10 8 7 12 12 N 1.46925 * 108.77158 * 305.36168 * 11 10 8 13 13 C 1.36938 * 120.63098 * 233.58365 * 12 11 10 14 14 H 1.07999 * 119.99949 * 152.30991 * 13 12 11 15 15 C 1.38809 * 120.00041 * 332.31111 * 13 12 11 16 16 N 1.31619 * 120.00308 * 342.59796 * 15 13 12 17 17 Si 1.86803 * 120.00314 * 162.60187 * 15 13 12 18 18 H 1.48494 * 109.47441 * 94.34601 * 17 15 13 19 19 H 1.48499 * 109.47367 * 214.35195 * 17 15 13 20 20 H 1.48508 * 109.46540 * 334.34624 * 17 15 13 21 21 C 1.46925 * 118.74141 * 53.61072 * 12 11 10 22 22 C 1.53041 * 109.45680 * 204.99559 * 8 7 5 23 23 H 1.08998 * 109.50098 * 298.55868 * 22 8 7 24 24 O 1.42901 * 109.49848 * 58.66250 * 22 8 7 25 25 C 1.41580 * 120.21197 * 0.26414 * 4 3 2 26 26 C 1.36326 * 118.23794 * 359.48657 * 25 4 3 27 27 C 1.34603 * 119.10259 * 180.02562 * 2 1 3 28 28 O 1.21984 * 120.22543 * 359.95305 * 27 2 1 29 29 H 1.08992 * 109.47564 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47427 * 119.99743 * 1 2 3 31 31 H 1.09006 * 109.46257 * 239.99121 * 1 2 3 32 32 H 0.96999 * 119.99789 * 0.26478 * 7 5 4 33 33 H 1.09006 * 109.49867 * 301.34001 * 10 8 7 34 34 H 1.09005 * 109.50196 * 61.42915 * 10 8 7 35 35 H 1.08998 * 109.58730 * 185.57658 * 11 10 8 36 36 H 1.09001 * 109.58908 * 65.14907 * 11 10 8 37 37 H 0.96996 * 120.00628 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.59247 * 186.59819 * 21 12 11 39 39 H 1.09008 * 109.70168 * 66.24420 * 21 12 11 40 40 H 0.96703 * 113.99795 * 179.97438 * 24 22 8 41 41 H 1.08002 * 120.88039 * 179.74600 * 25 4 3 42 42 H 1.07999 * 121.03318 * 180.23310 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.0894 1.1219 0.0000 4 6 3.4015 1.1945 -0.0005 5 6 4.0665 2.5154 -0.0010 6 8 5.2801 2.5848 -0.0020 7 7 3.3271 3.6421 -0.0065 8 6 3.9859 4.9506 -0.0131 9 1 4.9009 4.8994 0.5770 10 6 4.3288 5.3416 -1.4524 11 6 5.0484 6.6940 -1.4524 12 7 4.2138 7.6736 -0.7436 13 6 3.8730 8.8594 -1.3376 14 1 2.9568 9.3590 -1.0594 15 6 4.7051 9.4194 -2.2972 16 7 5.9554 9.0206 -2.3977 17 14 4.0505 10.7389 -3.4461 18 1 4.3593 12.0796 -2.8871 19 1 4.6919 10.5983 -4.7780 20 1 2.5798 10.5878 -3.5864 21 6 3.7522 7.3570 0.6149 22 6 3.0472 5.9971 0.5917 23 1 2.1425 6.0668 -0.0123 24 8 2.7031 5.6154 1.9251 25 6 4.1804 0.0123 -0.0067 26 6 3.5324 -1.1871 -0.0013 27 6 2.1197 -1.1761 -0.0005 28 8 1.4975 -2.2253 -0.0001 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3632 -0.5140 0.8900 32 1 2.3587 3.5867 -0.0061 33 1 4.9786 4.5838 -1.8903 34 1 3.4120 5.4172 -2.0372 35 1 5.2066 7.0237 -2.4792 36 1 6.0085 6.5971 -0.9455 37 1 6.5368 9.4116 -3.0685 38 1 3.0553 8.1242 0.9522 39 1 4.6051 7.3149 1.2923 40 1 2.1091 6.2350 2.3707 41 1 5.2594 0.0594 -0.0113 42 1 4.0819 -2.1169 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090782340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:28 Heat of formation + Delta-G solvation = -22.909273 kcal Electronic energy + Delta-G solvation = -27379.015302 eV Core-core repulsion = 23361.679855 eV Total energy + Delta-G solvation = -4017.335447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41444 -39.89156 -38.27882 -37.78470 -35.45576 -35.21974 -34.46650 -32.33337 -31.60328 -30.04686 -28.87262 -28.39122 -25.85971 -24.96571 -23.95657 -22.56094 -22.08799 -20.93261 -19.74585 -18.74053 -18.30778 -17.19105 -17.13755 -16.94145 -16.57878 -16.20079 -15.86943 -14.99990 -14.80139 -14.62591 -14.12799 -13.94581 -13.77141 -13.73195 -13.53885 -13.27546 -13.04911 -12.97827 -12.75940 -12.33069 -12.11014 -11.96081 -11.61686 -11.15647 -10.90408 -10.79595 -10.76015 -10.38695 -10.32783 -10.32418 -10.07407 -9.96110 -9.77916 -9.53638 -9.00311 -8.79939 -8.49903 -6.81334 -5.88567 -3.32480 0.10391 0.85715 1.75497 2.62994 3.03108 3.31950 3.33718 3.39699 3.41171 3.63523 4.29788 4.33385 4.44041 4.46920 4.63272 4.80685 4.81081 5.13984 5.20131 5.23768 5.28604 5.32062 5.43075 5.49521 5.54024 5.67618 5.72204 5.91417 6.04358 6.21839 6.43053 6.45227 6.61098 6.72447 6.74767 7.14743 7.24283 7.47661 7.56770 7.67999 7.69718 7.87418 8.18825 8.33934 9.09488 9.71948 10.27378 11.20065 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002775 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.085182 B =10088.156674 C =10228.571395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.338 5.338 3 N -0.183 5.183 4 C 0.026 3.974 5 C 0.584 3.416 6 O -0.526 6.526 7 N -0.694 5.694 8 C 0.161 3.839 9 H 0.092 0.908 10 C -0.147 4.147 11 C 0.171 3.829 12 N -0.588 5.588 13 C -0.260 4.260 14 H 0.067 0.933 15 C 0.006 3.994 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.121 3.879 22 C 0.080 3.920 23 H 0.058 0.942 24 O -0.571 6.571 25 C -0.029 4.029 26 C -0.194 4.194 27 C 0.479 3.521 28 O -0.528 6.528 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.404 0.596 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.025 0.975 37 H 0.256 0.744 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.374 0.626 41 H 0.165 0.835 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -15.692 5.243 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.160 5.160 3 N -0.014 5.014 4 C -0.146 4.146 5 C 0.366 3.634 6 O -0.401 6.401 7 N -0.343 5.343 8 C 0.058 3.942 9 H 0.110 0.890 10 C -0.188 4.188 11 C 0.045 3.955 12 N -0.312 5.312 13 C -0.389 4.389 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.542 5.542 17 Si 0.733 3.267 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.007 4.007 22 C 0.019 3.981 23 H 0.075 0.925 24 O -0.375 6.375 25 C -0.052 4.052 26 C -0.224 4.224 27 C 0.278 3.722 28 O -0.406 6.406 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.239 0.761 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.221 0.779 41 H 0.183 0.817 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.959 -16.171 4.985 19.147 hybrid contribution -0.512 0.556 -0.491 0.901 sum -9.471 -15.616 4.494 18.808 Atomic orbital electron populations 1.22247 0.73414 1.05535 1.04727 1.46765 1.09922 1.02639 1.56695 1.71119 1.11378 1.12463 1.06396 1.21947 0.88039 0.96646 1.07932 1.17176 0.86481 0.82171 0.77563 1.90845 1.12539 1.86181 1.50507 1.45970 1.10563 1.05509 1.72258 1.21136 0.96054 0.79142 0.97907 0.89011 1.22630 1.01550 1.00883 0.93719 1.20840 0.90915 0.83925 0.99832 1.44052 1.59861 1.17153 1.10133 1.19148 1.02243 0.98587 1.18967 0.91532 1.25064 0.94612 0.98239 1.01448 1.70029 1.03947 1.44856 1.35366 0.86279 0.78421 0.81494 0.80533 1.21377 1.21459 1.20378 1.21525 0.97184 0.92761 0.89208 1.22775 0.97159 0.95793 0.82367 0.92453 1.86480 1.70336 1.52307 1.28410 1.22291 1.03294 0.90265 0.89383 1.22688 0.92607 1.00483 1.06595 1.18105 0.90161 0.83873 0.80061 1.90976 1.69340 1.29393 1.50938 0.87776 0.89247 0.89255 0.76065 0.91740 0.92179 0.88784 0.95687 0.93411 0.92113 0.95239 0.77902 0.81698 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.21 59.85 0.61 1.15 16 2 N -0.34 -3.44 3.62 -70.15 -0.25 -3.69 16 3 N -0.18 -1.97 10.05 33.41 0.34 -1.64 16 4 C 0.03 0.31 6.84 -82.83 -0.57 -0.26 16 5 C 0.58 8.47 7.77 -12.32 -0.10 8.37 16 6 O -0.53 -9.16 16.05 5.31 0.09 -9.07 16 7 N -0.69 -9.85 4.91 -54.70 -0.27 -10.12 16 8 C 0.16 2.72 2.12 -67.89 -0.14 2.57 16 9 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 10 C -0.15 -2.73 5.65 -26.61 -0.15 -2.88 16 11 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 12 N -0.59 -13.86 2.99 -172.32 -0.52 -14.37 16 13 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 14 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 15 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 16 N -0.90 -25.21 11.19 55.49 0.62 -24.59 16 17 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.12 2.34 6.14 -3.71 -0.02 2.32 16 22 C 0.08 1.28 3.14 -26.61 -0.08 1.20 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 O -0.57 -7.99 13.16 -35.23 -0.46 -8.46 16 25 C -0.03 -0.29 9.67 -39.00 -0.38 -0.66 16 26 C -0.19 -1.85 10.11 -39.12 -0.40 -2.25 16 27 C 0.48 5.52 7.47 -15.19 -0.11 5.41 16 28 O -0.53 -7.38 17.07 4.93 0.08 -7.30 16 29 H 0.10 0.51 8.05 -51.93 -0.42 0.09 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 4.99 7.94 -40.82 -0.32 4.66 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 39 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.37 3.69 9.08 45.56 0.41 4.10 16 41 H 0.17 1.42 7.72 -52.49 -0.41 1.01 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -32.89 354.46 -6.43 -39.32 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.78 Total: 6.77 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -1.59 Total: 12.03 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.08 Total: -54.41 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.29 Total: -24.82 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.89 -6.43 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090782340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.411 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds