Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28393 * 119.09462 * 2 1 4 4 C 1.31408 * 122.26199 * 180.02562 * 3 2 1 5 5 C 1.47878 * 119.89125 * 179.97438 * 4 3 2 6 6 O 1.21559 * 119.99978 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00375 * 359.73325 * 5 4 3 8 8 C 1.46503 * 120.00257 * 180.27466 * 7 5 4 9 9 H 1.08997 * 109.45563 * 324.96630 * 8 7 5 10 10 C 1.53037 * 109.46153 * 84.92945 * 8 7 5 11 11 C 1.53189 * 109.31491 * 181.38677 * 10 8 7 12 12 N 1.46925 * 108.77158 * 305.36168 * 11 10 8 13 13 C 1.36938 * 120.63098 * 233.58365 * 12 11 10 14 14 H 1.07999 * 119.99949 * 152.30991 * 13 12 11 15 15 C 1.38809 * 120.00041 * 332.31111 * 13 12 11 16 16 N 1.31619 * 120.00308 * 342.59796 * 15 13 12 17 17 Si 1.86803 * 120.00314 * 162.60187 * 15 13 12 18 18 H 1.48494 * 109.47441 * 94.34601 * 17 15 13 19 19 H 1.48499 * 109.47367 * 214.35195 * 17 15 13 20 20 H 1.48508 * 109.46540 * 334.34624 * 17 15 13 21 21 C 1.46925 * 118.74141 * 53.61072 * 12 11 10 22 22 C 1.53041 * 109.45680 * 204.99559 * 8 7 5 23 23 H 1.08998 * 109.50098 * 298.55868 * 22 8 7 24 24 O 1.42901 * 109.49848 * 58.66250 * 22 8 7 25 25 C 1.41580 * 120.21197 * 0.26414 * 4 3 2 26 26 C 1.36326 * 118.23794 * 359.48657 * 25 4 3 27 27 C 1.34603 * 119.10259 * 180.02562 * 2 1 3 28 28 O 1.21984 * 120.22543 * 359.95305 * 27 2 1 29 29 H 1.08992 * 109.47564 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47427 * 119.99743 * 1 2 3 31 31 H 1.09006 * 109.46257 * 239.99121 * 1 2 3 32 32 H 0.96999 * 119.99789 * 0.26478 * 7 5 4 33 33 H 1.09006 * 109.49867 * 301.34001 * 10 8 7 34 34 H 1.09005 * 109.50196 * 61.42915 * 10 8 7 35 35 H 1.08998 * 109.58730 * 185.57658 * 11 10 8 36 36 H 1.09001 * 109.58908 * 65.14907 * 11 10 8 37 37 H 0.96996 * 120.00628 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.59247 * 186.59819 * 21 12 11 39 39 H 1.09008 * 109.70168 * 66.24420 * 21 12 11 40 40 H 0.96703 * 113.99795 * 179.97438 * 24 22 8 41 41 H 1.08002 * 120.88039 * 179.74600 * 25 4 3 42 42 H 1.07999 * 121.03318 * 180.23310 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.0894 1.1219 0.0000 4 6 3.4015 1.1945 -0.0005 5 6 4.0665 2.5154 -0.0010 6 8 5.2801 2.5848 -0.0020 7 7 3.3271 3.6421 -0.0065 8 6 3.9859 4.9506 -0.0131 9 1 4.9009 4.8994 0.5770 10 6 4.3288 5.3416 -1.4524 11 6 5.0484 6.6940 -1.4524 12 7 4.2138 7.6736 -0.7436 13 6 3.8730 8.8594 -1.3376 14 1 2.9568 9.3590 -1.0594 15 6 4.7051 9.4194 -2.2972 16 7 5.9554 9.0206 -2.3977 17 14 4.0505 10.7389 -3.4461 18 1 4.3593 12.0796 -2.8871 19 1 4.6919 10.5983 -4.7780 20 1 2.5798 10.5878 -3.5864 21 6 3.7522 7.3570 0.6149 22 6 3.0472 5.9971 0.5917 23 1 2.1425 6.0668 -0.0123 24 8 2.7031 5.6154 1.9251 25 6 4.1804 0.0123 -0.0067 26 6 3.5324 -1.1871 -0.0013 27 6 2.1197 -1.1761 -0.0005 28 8 1.4975 -2.2253 -0.0001 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3632 -0.5140 0.8900 32 1 2.3587 3.5867 -0.0061 33 1 4.9786 4.5838 -1.8903 34 1 3.4120 5.4172 -2.0372 35 1 5.2066 7.0237 -2.4792 36 1 6.0085 6.5971 -0.9455 37 1 6.5368 9.4116 -3.0685 38 1 3.0553 8.1242 0.9522 39 1 4.6051 7.3149 1.2923 40 1 2.1091 6.2350 2.3707 41 1 5.2594 0.0594 -0.0113 42 1 4.0819 -2.1169 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090782340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -49.404990 kcal Electronic energy + Delta-G solvation = -27380.164243 eV Core-core repulsion = 23361.679855 eV Total energy + Delta-G solvation = -4018.484387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.26406 -41.12702 -39.54304 -38.85332 -36.94206 -36.07486 -35.77865 -33.87448 -32.79417 -31.58289 -30.20620 -29.37153 -27.22534 -26.23318 -24.82966 -24.06415 -23.60448 -22.16315 -21.26931 -19.79870 -19.25419 -18.73739 -17.98111 -17.95598 -17.88636 -17.24128 -17.11239 -16.69890 -16.05184 -15.84221 -15.64953 -15.21716 -14.96000 -14.82562 -14.57052 -14.49768 -14.36720 -13.88150 -13.75471 -13.53728 -13.48498 -13.24329 -12.97544 -12.84140 -12.70194 -12.36517 -12.08409 -12.05757 -11.85950 -11.55344 -11.53487 -11.23572 -11.04272 -10.95597 -10.54882 -10.13697 -9.73873 -8.73655 -7.88181 -5.34707 -0.70980 -0.06064 0.98266 1.49605 1.51961 1.61253 1.63409 1.91617 2.38122 2.51358 2.74558 3.15251 3.29196 3.52165 3.60549 3.65914 3.69717 3.90497 4.09452 4.25188 4.29924 4.32538 4.42934 4.48826 4.53540 4.56441 4.68166 4.70712 4.80223 4.88343 4.90992 4.96425 5.05894 5.16196 5.39251 5.43036 5.63910 5.69916 6.26702 6.36589 6.41449 6.77044 6.91356 7.06181 7.12704 7.81282 8.33136 9.19083 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002775 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.085182 B =10088.156674 C =10228.571395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.333 5.333 3 N -0.173 5.173 4 C 0.015 3.985 5 C 0.586 3.414 6 O -0.559 6.559 7 N -0.685 5.685 8 C 0.169 3.831 9 H 0.066 0.934 10 C -0.130 4.130 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.264 4.264 14 H 0.076 0.924 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.265 1.265 21 C 0.118 3.882 22 C 0.102 3.898 23 H 0.074 0.926 24 O -0.570 6.570 25 C -0.027 4.027 26 C -0.187 4.187 27 C 0.470 3.530 28 O -0.557 6.557 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.417 0.583 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.063 0.937 36 H -0.005 1.005 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.014 0.986 40 H 0.396 0.604 41 H 0.177 0.823 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -16.483 5.714 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.155 5.155 3 N -0.005 5.005 4 C -0.155 4.155 5 C 0.370 3.630 6 O -0.435 6.435 7 N -0.335 5.335 8 C 0.064 3.936 9 H 0.084 0.916 10 C -0.171 4.171 11 C 0.053 3.947 12 N -0.329 5.329 13 C -0.394 4.394 14 H 0.094 0.906 15 C -0.245 4.245 16 N -0.581 5.581 17 Si 0.796 3.204 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.189 1.189 21 C -0.009 4.009 22 C 0.041 3.959 23 H 0.092 0.908 24 O -0.378 6.378 25 C -0.051 4.051 26 C -0.216 4.216 27 C 0.270 3.730 28 O -0.438 6.438 29 H 0.143 0.857 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.254 0.746 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.013 0.987 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.246 0.754 41 H 0.194 0.806 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.445 -16.958 5.495 21.184 hybrid contribution 0.189 0.790 -0.536 0.973 sum -11.256 -16.168 4.959 20.314 Atomic orbital electron populations 1.22582 0.71420 1.07244 1.05563 1.47027 1.11135 1.02118 1.55205 1.71102 1.10956 1.12612 1.05811 1.21580 0.88675 0.95723 1.09541 1.17451 0.86116 0.82959 0.76503 1.90834 1.14086 1.86799 1.51828 1.45726 1.11069 1.04453 1.72212 1.20773 0.95747 0.80884 0.96192 0.91606 1.22348 1.01264 0.98088 0.95356 1.20565 0.90460 0.86147 0.97553 1.44267 1.59866 1.16812 1.11918 1.19549 1.02224 0.98976 1.18630 0.90617 1.25836 0.94789 1.00698 1.03217 1.70193 1.05218 1.46574 1.36111 0.85262 0.78325 0.78780 0.78045 1.21469 1.22217 1.18927 1.21691 0.97120 0.95350 0.86752 1.22307 0.96819 0.93046 0.83738 0.90835 1.86454 1.71048 1.52924 1.27338 1.22350 1.03792 0.89633 0.89276 1.22888 0.91864 1.01254 1.05611 1.18429 0.90888 0.83820 0.79843 1.90966 1.69999 1.30291 1.52530 0.85662 0.88476 0.88400 0.74592 0.91821 0.91174 0.91900 0.98726 0.94051 0.90698 0.96800 0.75365 0.80558 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.21 127.77 1.30 2.07 16 2 N -0.33 -6.00 3.62 -494.05 -1.79 -7.79 16 3 N -0.17 -3.32 10.05 -48.20 -0.48 -3.81 16 4 C 0.02 0.33 6.84 42.59 0.29 0.62 16 5 C 0.59 16.30 7.77 86.80 0.67 16.97 16 6 O -0.56 -19.32 16.05 -3.90 -0.06 -19.38 16 7 N -0.68 -18.25 4.91 -445.24 -2.18 -20.43 16 8 C 0.17 5.55 2.12 45.02 0.10 5.65 16 9 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 10 C -0.13 -4.82 5.65 30.67 0.17 -4.65 16 11 C 0.18 8.48 5.31 86.36 0.46 8.93 16 12 N -0.60 -28.60 2.99 -699.09 -2.09 -30.70 16 13 C -0.26 -13.64 9.58 84.03 0.81 -12.84 16 14 H 0.08 3.71 7.89 -2.91 -0.02 3.69 16 15 C -0.05 -2.68 4.91 84.86 0.42 -2.26 16 16 N -0.94 -54.18 11.19 21.65 0.24 -53.94 16 17 Si 0.97 42.99 29.59 68.60 2.03 45.02 16 18 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 21 C 0.12 4.44 6.14 86.36 0.53 4.97 16 22 C 0.10 3.05 3.14 30.67 0.10 3.15 16 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 24 O -0.57 -14.27 13.16 -148.98 -1.96 -16.23 16 25 C -0.03 -0.49 9.67 22.65 0.22 -0.27 16 26 C -0.19 -3.18 10.11 22.57 0.23 -2.95 16 27 C 0.47 9.95 7.47 85.01 0.64 10.59 16 28 O -0.56 -14.75 17.07 -5.26 -0.09 -14.84 16 29 H 0.12 0.82 8.05 -2.39 -0.02 0.80 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.42 9.11 7.94 -92.71 -0.74 8.37 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.06 3.36 6.04 -2.39 -0.01 3.35 16 36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.40 6.34 9.08 -74.06 -0.67 5.66 16 41 H 0.18 2.77 7.72 -2.91 -0.02 2.74 16 42 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.13 354.46 -0.80 -72.93 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.33 Total: 19.20 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 5.93 Total: 29.98 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -6.31 Total: -116.67 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -2.11 Total: -50.46 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.13 -0.80 -72.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090782340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.520 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds