Wall clock time and date at job start Fri Apr 10 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35648 * 119.95655 * 2 1 4 4 O 1.34682 * 119.11544 * 359.97438 * 3 2 1 5 5 N 1.31850 * 121.77744 * 179.97438 * 3 2 1 6 6 C 1.32573 * 121.60882 * 0.02562 * 5 3 2 7 7 C 1.39424 * 119.70028 * 0.02562 * 6 5 3 8 8 C 1.46894 * 120.81751 * 179.97438 * 7 6 5 9 9 O 1.21674 * 120.00503 * 354.22914 * 8 7 6 10 10 N 1.34781 * 119.99896 * 174.23355 * 8 7 6 11 11 C 1.46504 * 119.99954 * 185.09971 * 10 8 7 12 12 C 1.52997 * 109.46806 * 179.97438 * 11 10 8 13 13 C 1.53782 * 113.61614 * 274.13358 * 12 11 10 14 14 C 1.53957 * 87.02058 * 220.05081 * 13 12 11 15 15 N 1.46503 * 113.53736 * 270.81650 * 14 13 12 16 16 C 1.36934 * 119.99566 * 252.49222 * 15 14 13 17 17 H 1.07999 * 120.00310 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00034 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00420 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99688 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47162 * 89.99782 * 20 18 16 22 22 H 1.48505 * 109.47275 * 209.99652 * 20 18 16 23 23 H 1.48502 * 109.47402 * 329.99617 * 20 18 16 24 24 C 1.53779 * 87.11109 * 25.36438 * 14 13 12 25 25 C 1.35021 * 119.95076 * 180.02562 * 2 1 3 26 26 O 1.21828 * 120.77144 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.46844 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47302 * 120.00183 * 1 2 3 29 29 H 1.08998 * 109.47483 * 240.00542 * 1 2 3 30 30 H 0.96697 * 117.00500 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.14470 * 179.72901 * 6 5 3 32 32 H 0.96999 * 119.99985 * 5.09238 * 10 8 7 33 33 H 1.09002 * 109.47287 * 299.99867 * 11 10 8 34 34 H 1.09006 * 109.46751 * 59.99565 * 11 10 8 35 35 H 1.08999 * 112.84997 * 45.34133 * 12 11 10 36 36 H 1.08990 * 113.61614 * 334.57382 * 13 12 11 37 37 H 1.09004 * 113.60681 * 105.47200 * 13 12 11 38 38 H 1.08991 * 113.74124 * 139.94898 * 14 13 12 39 39 H 0.96990 * 119.99992 * 72.49570 * 15 14 13 40 40 H 0.96993 * 120.00422 * 180.02562 * 19 18 16 41 41 H 1.08996 * 113.61355 * 220.08915 * 24 14 13 42 42 H 1.09000 * 113.61334 * 89.18584 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1424 1.1753 0.0000 4 8 1.4502 2.3306 -0.0005 5 7 3.4602 1.2172 0.0005 6 6 4.1906 0.1108 0.0005 7 6 3.5604 -1.1330 -0.0005 8 6 4.3456 -2.3744 -0.0011 9 8 5.5569 -2.3282 -0.1066 10 7 3.7243 -3.5648 0.1152 11 6 4.5125 -4.7947 0.2271 12 6 3.5709 -5.9946 0.3467 13 6 3.1203 -6.2828 1.7885 14 6 3.2822 -7.7771 1.4552 15 7 2.0709 -8.3876 0.9018 16 6 1.3333 -9.2557 1.6617 17 1 1.6443 -9.4900 2.6690 18 6 0.1853 -9.8339 1.1376 19 7 -0.5240 -10.6679 1.8681 20 14 -0.3530 -9.4282 -0.6045 21 1 0.2650 -10.3917 -1.5506 22 1 -1.8321 -9.5204 -0.6998 23 1 0.0802 -8.0500 -0.9483 24 6 4.2999 -7.3482 0.3851 25 6 2.1391 -1.1699 -0.0005 26 8 1.5433 -2.2326 -0.0005 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 -0.3634 -0.5137 0.8900 30 1 1.9635 3.1500 -0.0001 31 1 5.2688 0.1726 -0.0035 32 1 2.7553 -3.6072 0.1249 33 1 5.1360 -4.9086 -0.6597 34 1 5.1462 -4.7407 1.1123 35 1 2.7496 -5.9613 -0.3691 36 1 3.8198 -5.9257 2.5442 37 1 2.0904 -5.9887 1.9910 38 1 3.7195 -8.3622 2.2640 39 1 1.7915 -8.1770 -0.0028 40 1 -1.3259 -11.0722 1.5017 41 1 4.2210 -7.9131 -0.5438 42 1 5.3226 -7.2830 0.7564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091177812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:30 Heat of formation + Delta-G solvation = -21.472649 kcal Electronic energy + Delta-G solvation = -26797.569118 eV Core-core repulsion = 22780.295968 eV Total energy + Delta-G solvation = -4017.273150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52396 -39.92905 -39.12013 -38.43571 -37.48021 -35.76305 -34.48426 -33.10150 -31.30013 -30.52559 -28.58361 -27.61969 -25.32223 -25.06117 -24.25255 -23.29997 -21.70312 -21.07243 -20.03436 -19.34377 -18.64507 -17.88930 -17.55116 -17.48475 -16.62901 -16.26309 -15.83505 -15.32422 -15.08585 -14.96328 -14.83674 -14.34846 -14.20077 -13.85573 -13.81189 -13.46030 -13.29332 -13.16402 -12.72601 -12.61407 -12.40535 -11.94797 -11.46991 -11.29953 -11.13540 -10.87436 -10.85399 -10.65762 -10.40494 -10.23243 -10.08806 -9.80022 -9.60004 -9.44131 -9.03608 -8.86224 -8.70402 -7.24696 -5.75751 -3.11113 -0.14334 1.11720 1.23779 2.49676 2.65612 3.32967 3.39712 3.43177 3.44371 3.46786 3.50338 3.89643 4.46487 4.60625 4.70878 4.76426 4.82966 5.02000 5.05548 5.08971 5.15335 5.26543 5.39326 5.45757 5.54617 5.65929 5.74316 5.85592 5.99963 6.03472 6.21972 6.28306 6.32838 6.53967 6.64309 6.74001 6.86570 6.99960 7.01575 7.14564 7.79242 8.02909 8.37894 8.44292 9.22551 9.95106 10.14922 11.42527 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002894 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.763806 B = 9673.696581 C =10966.360882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.508 5.508 3 C 0.607 3.393 4 O -0.454 6.454 5 N -0.593 5.593 6 C 0.267 3.733 7 C -0.349 4.349 8 C 0.582 3.418 9 O -0.558 6.558 10 N -0.713 5.713 11 C 0.131 3.869 12 C -0.123 4.123 13 C -0.166 4.166 14 C 0.173 3.827 15 N -0.730 5.730 16 C -0.244 4.244 17 H 0.092 0.908 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.148 4.148 25 C 0.551 3.449 26 O -0.507 6.507 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.445 0.555 31 H 0.190 0.810 32 H 0.415 0.585 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.067 0.933 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 30.884 -4.938 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.235 5.235 3 C 0.309 3.691 4 O -0.251 6.251 5 N -0.334 5.334 6 C 0.121 3.879 7 C -0.361 4.361 8 C 0.369 3.631 9 O -0.439 6.439 10 N -0.372 5.372 11 C 0.007 3.993 12 C -0.141 4.141 13 C -0.207 4.207 14 C 0.061 3.939 15 N -0.370 5.370 16 C -0.374 4.374 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.187 4.187 25 C 0.351 3.649 26 O -0.383 6.383 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.308 0.692 31 H 0.207 0.793 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.099 30.411 -4.805 31.387 hybrid contribution -1.127 0.226 -1.266 1.710 sum 4.972 30.637 -6.071 31.626 Atomic orbital electron populations 1.22316 0.75331 1.05370 1.05644 1.46418 1.11322 1.05011 1.60793 1.20356 0.85140 0.81569 0.82053 1.84147 1.39280 1.14857 1.86852 1.68536 1.00499 1.31854 1.32491 1.23075 1.00805 0.84691 0.79331 1.21650 0.91927 0.97149 1.25325 1.17104 0.86600 0.82754 0.76684 1.90779 1.13419 1.87447 1.52228 1.46501 1.12703 1.05535 1.72451 1.21449 0.93809 0.82531 1.01502 1.22729 0.98456 0.93348 0.99593 1.23867 1.01280 1.01212 0.94326 1.21046 0.87116 0.91256 0.94480 1.42525 1.26652 1.53032 1.14831 1.19124 1.03670 1.16665 0.97898 0.89026 1.24668 0.97594 0.99129 0.97729 1.69695 1.18270 1.33739 1.36418 0.86568 0.77927 0.78092 0.86099 1.21024 1.21709 1.20277 1.23454 0.99006 0.95195 1.01092 1.17108 0.87797 0.82080 0.77869 1.90749 1.69736 1.26426 1.51372 0.87956 0.89096 0.88975 0.69179 0.79323 0.74090 0.91813 0.91542 0.89305 0.91027 0.91385 0.91071 0.80502 0.93050 0.91470 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 10.10 59.85 0.60 0.91 16 2 N -0.51 -4.05 2.99 -128.29 -0.38 -4.43 16 3 C 0.61 3.58 8.60 -88.69 -0.76 2.82 16 4 O -0.45 -0.85 11.91 -15.81 -0.19 -1.04 16 5 N -0.59 -4.11 10.31 -13.98 -0.14 -4.25 16 6 C 0.27 2.38 10.83 -16.79 -0.18 2.20 16 7 C -0.35 -4.15 5.93 -104.44 -0.62 -4.77 16 8 C 0.58 8.71 7.73 -12.76 -0.10 8.61 16 9 O -0.56 -9.38 16.42 5.21 0.09 -9.30 16 10 N -0.71 -10.94 5.48 -61.54 -0.34 -11.28 16 11 C 0.13 1.96 5.50 -4.04 -0.02 1.93 16 12 C -0.12 -1.98 3.62 -89.81 -0.33 -2.31 16 13 C -0.17 -2.93 7.44 -25.83 -0.19 -3.13 16 14 C 0.17 3.42 4.57 -67.02 -0.31 3.11 16 15 N -0.73 -17.73 5.11 -52.55 -0.27 -18.00 16 16 C -0.24 -7.00 10.45 -15.06 -0.16 -7.16 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.70 13.97 55.49 0.78 -28.92 16 20 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16 21 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 24 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 25 C 0.55 6.45 7.47 -14.64 -0.11 6.34 16 26 O -0.51 -7.36 13.90 5.07 0.07 -7.29 16 27 H 0.10 0.30 6.77 -51.93 -0.35 -0.05 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.45 -1.23 9.08 45.56 0.41 -0.81 16 31 H 0.19 1.44 7.70 -52.49 -0.40 1.04 16 32 H 0.41 6.61 5.14 -40.82 -0.21 6.40 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 39 H 0.36 8.68 5.76 -40.82 -0.24 8.45 16 40 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -37.36 355.36 -6.78 -44.14 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.58 Total: 11.15 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.46 Total: 6.00 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.36 Total: -66.88 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.03 Total: -17.63 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.36 -6.78 -44.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091177812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.670 kcal (2) G-P(sol) polarization free energy of solvation -37.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds